RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 SOCS6O14544 535 aa15.09■□□□□ 0.01
COL4A1-204ENST00000543140 NSA2O95478 260 aaKnown RBP15.09■□□□□ 0.01
COL4A1-204ENST00000543140 SAGP10523 405 aaPredicted RBP15.09■□□□□ 0.01
COL4A1-204ENST00000543140 DRD5P21918 477 aa15.09■□□□□ 0.01
COL4A1-204ENST00000543140 GABRA4P48169 554 aa15.09■□□□□ 0.01
COL4A1-204ENST00000543140 SEPHS1P49903 392 aa15.09■□□□□ 0.01
COL4A1-204ENST00000543140 PPP5CP53041 499 aa15.09■□□□□ 0.01
COL4A1-204ENST00000543140 ZNF595Q8IYB9 648 aa15.09■□□□□ 0.01
COL4A1-204ENST00000543140 OR13C2Q8NGS9 318 aa15.09■□□□□ 0.01
COL4A1-204ENST00000543140 OR51Q1Q8NH59 317 aa15.09■□□□□ 0.01
COL4A1-204ENST00000543140 BPIFA2Q96DR5 249 aa15.09■□□□□ 0.01
COL4A1-204ENST00000543140 LMF2Q9BU23 707 aaKnown RBP15.09■□□□□ 0.01
COL4A1-204ENST00000543140 NUAK2Q9H093 628 aa15.09■□□□□ 0.01
COL4A1-204ENST00000543140 MED20Q9H944 212 aa15.09■□□□□ 0.01
COL4A1-204ENST00000543140 TMEM27Q9HBJ8 222 aa15.09■□□□□ 0.01
COL4A1-204ENST00000543140 MRPS18AQ9NVS2 196 aaKnown RBP15.09■□□□□ 0.01
COL4A1-204ENST00000543140 FLRT3Q9NZU0 649 aa15.09■□□□□ 0.01
COL4A1-204ENST00000543140 MRPS17Q9Y2R5 130 aaKnown RBP15.09■□□□□ 0.01
COL4A1-204ENST00000543140 HEATR5AQ86XA9 2040 aa15.09■□□□□ 0.01
COL4A1-204ENST00000543140 GNB5O14775 395 aa15.09■□□□□ 0.01
COL4A1-204ENST00000543140 CBFA2T3O75081 653 aa15.09■□□□□ 0.01
COL4A1-204ENST00000543140 RFPL3O75679 317 aa15.09■□□□□ 0.01
COL4A1-204ENST00000543140 TSPAN19P0C672 248 aa15.09■□□□□ 0.01
COL4A1-204ENST00000543140 LIMS3P0CW19 117 aa15.09■□□□□ 0.01
COL4A1-204ENST00000543140 LIMS4P0CW20 117 aa15.09■□□□□ 0.01
COL4A1-204ENST00000543140 ATP6V1E1P36543 226 aa15.09■□□□□ 0.01
COL4A1-204ENST00000543140 TGM4P49221 684 aa15.09■□□□□ 0.01
COL4A1-204ENST00000543140 MXD1Q05195 221 aa15.09■□□□□ 0.01
COL4A1-204ENST00000543140 NDUFAF6Q330K2 333 aa15.09■□□□□ 0.01
COL4A1-204ENST00000543140 PLBD1Q6P4A8 553 aa15.09■□□□□ 0.01
COL4A1-204ENST00000543140 SIX5Q8N196 739 aa15.09■□□□□ 0.01
COL4A1-204ENST00000543140 OR9Q1Q8NGQ5 310 aa15.09■□□□□ 0.01
COL4A1-204ENST00000543140 HOXB13Q92826 284 aaPredicted RBP15.09■□□□□ 0.01
COL4A1-204ENST00000543140 RFKQ969G6 155 aa15.09■□□□□ 0.01
COL4A1-204ENST00000543140 CLIP3Q96DZ5 547 aa15.09■□□□□ 0.01
COL4A1-204ENST00000543140 PDE7BQ9NP56 450 aa15.09■□□□□ 0.01
COL4A1-204ENST00000543140 MEPEQ9NQ76 525 aaPredicted RBP15.09■□□□□ 0.01
COL4A1-204ENST00000543140 SNTG1Q9NSN8 517 aa15.09■□□□□ 0.01
COL4A1-204ENST00000543140 TOR4AQ9NXH8 423 aa15.09■□□□□ 0.01
COL4A1-204ENST00000543140 TRAV27A0A087WT01 109 aa15.08■□□□□ 0.01
COL4A1-204ENST00000543140 ZC3H12DA2A288 527 aaKnown RBP15.08■□□□□ 0.01
COL4A1-204ENST00000543140 RHPN2P1A8MT19 583 aa15.08■□□□□ 0.01
COL4A1-204ENST00000543140 LMO7DNF2Z398 122 aa15.08■□□□□ 0.01
COL4A1-204ENST00000543140 CTDSP2O14595 271 aa15.08■□□□□ 0.01
COL4A1-204ENST00000543140 HNRNPCP07910 306 aaKnown RBP eCLIP15.08■□□□□ 0.01
COL4A1-204ENST00000543140 IL9P15248 144 aa15.08■□□□□ 0.01
COL4A1-204ENST00000543140 ENDOUP21128 410 aaKnown RBP15.08■□□□□ 0.01
COL4A1-204ENST00000543140 CD40LGP29965 261 aa15.08■□□□□ 0.01
COL4A1-204ENST00000543140 KHDRBS1Q07666 443 aaKnown RBP eCLIP15.08■□□□□ 0.01
COL4A1-204ENST00000543140 SNAP47Q5SQN1 464 aa15.08■□□□□ 0.01
COL4A1-204ENST00000543140 FCRLBQ6BAA4 426 aa15.08■□□□□ 0.01
COL4A1-204ENST00000543140 THSD4Q6ZMP0 1018 aa15.08■□□□□ 0.01
COL4A1-204ENST00000543140 CADM4Q8NFZ8 388 aa15.08■□□□□ 0.01
COL4A1-204ENST00000543140 OR6C4Q8NGE1 309 aa15.08■□□□□ 0.01
COL4A1-204ENST00000543140 OR51A7Q8NH64 312 aa15.08■□□□□ 0.01
COL4A1-204ENST00000543140 C16orf52Q8NHV5 167 aa15.08■□□□□ 0.01
COL4A1-204ENST00000543140 HS6ST2Q96MM7 605 aa15.08■□□□□ 0.01
COL4A1-204ENST00000543140 TBCCD1Q9NVR7 557 aa15.08■□□□□ 0.01
COL4A1-204ENST00000543140 H2AFY2Q9P0M6 372 aaPredicted RBP15.08■□□□□ 0.01
COL4A1-204ENST00000543140 CBLCQ9ULV8 474 aa15.08■□□□□ 0.01
COL4A1-204ENST00000543140 MED31Q9Y3C7 131 aa15.08■□□□□ 0.01
COL4A1-204ENST00000543140 A3GALT2U3KPV4 340 aa15.08■□□□□ 0.01
COL4A1-204ENST00000543140 CACNA1IQ9P0X4 2223 aa15.08■□□□□ 0
COL4A1-204ENST00000543140 A0A1B0GWA3 101 aa15.08■□□□□ 0
COL4A1-204ENST00000543140 TLCD2A6NGC4 264 aa15.08■□□□□ 0
COL4A1-204ENST00000543140 PLD2O14939 933 aa15.08■□□□□ 0
COL4A1-204ENST00000543140 MYF5P13349 255 aa15.08■□□□□ 0
COL4A1-204ENST00000543140 BCKDHBP21953 392 aa15.08■□□□□ 0
COL4A1-204ENST00000543140 ALAS2P22557 587 aa15.08■□□□□ 0
COL4A1-204ENST00000543140 CD1CP29017 333 aa15.08■□□□□ 0
COL4A1-204ENST00000543140 GPR3P46089 330 aa15.08■□□□□ 0
COL4A1-204ENST00000543140 HNRNPKP61978 463 aaKnown RBP eCLIP15.08■□□□□ 0
COL4A1-204ENST00000543140 PRKCDQ05655 676 aa15.08■□□□□ 0
COL4A1-204ENST00000543140 AMZ1Q400G9 498 aa15.08■□□□□ 0
COL4A1-204ENST00000543140 PTCRAQ6ISU1 281 aaPredicted RBP15.08■□□□□ 0
COL4A1-204ENST00000543140 LAPTM4BQ86VI4 370 aa15.08■□□□□ 0
COL4A1-204ENST00000543140 CDK20Q8IZL9 346 aa15.08■□□□□ 0
COL4A1-204ENST00000543140 CADM2Q8N3J6 435 aa15.08■□□□□ 0
COL4A1-204ENST00000543140 NELL2Q99435 816 aa15.08■□□□□ 0
COL4A1-204ENST00000543140 ZNF559Q9BR84 538 aa15.08■□□□□ 0
COL4A1-204ENST00000543140 MROQ9BYG7 248 aa15.08■□□□□ 0
COL4A1-204ENST00000543140 UCK1Q9HA47 277 aa15.08■□□□□ 0
COL4A1-204ENST00000543140 POLE3Q9NRF9 147 aa15.08■□□□□ 0
COL4A1-204ENST00000543140 LRIT1Q9P2V4 623 aa15.08■□□□□ 0
COL4A1-204ENST00000543140 SSR3Q9UNL2 185 aa15.08■□□□□ 0
COL4A1-204ENST00000543140 OR10H1Q9Y4A9 318 aa15.08■□□□□ 0
COL4A1-204ENST00000543140 FUOMA2VDF0 154 aa15.07■□□□□ 0
COL4A1-204ENST00000543140 TBX1O43435 398 aa15.07■□□□□ 0
COL4A1-204ENST00000543140 FMO6PO60774 539 aa15.07■□□□□ 0
COL4A1-204ENST00000543140 HMGN1P05114 100 aa15.07■□□□□ 0
COL4A1-204ENST00000543140 IFI6P09912 130 aa15.07■□□□□ 0
COL4A1-204ENST00000543140 CT45A8P0DMV1 189 aa15.07■□□□□ 0
COL4A1-204ENST00000543140 CT45A9P0DMV2 189 aa15.07■□□□□ 0
COL4A1-204ENST00000543140 CPEP16870 476 aa15.07■□□□□ 0
COL4A1-204ENST00000543140 BMP7P18075 431 aa15.07■□□□□ 0
COL4A1-204ENST00000543140 TBXA2RP21731 343 aa15.07■□□□□ 0
COL4A1-204ENST00000543140 ACAA2P42765 397 aaKnown RBP15.07■□□□□ 0
COL4A1-204ENST00000543140 OR1D5P58170 312 aa15.07■□□□□ 0
COL4A1-204ENST00000543140 NXPH1P58417 271 aa15.07■□□□□ 0
COL4A1-204ENST00000543140 BNC1Q01954 994 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms