RNA–Protein interactions for RNA: ENST00000465073.6

USP42-205, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 5

Gene USP42, Length 1,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-205ENST00000465073 DUSP22Q9NRW4 184 aa20.33■□□□□ 0.85
USP42-205ENST00000465073 GIN1Q9NXP7 522 aa20.33■□□□□ 0.85
USP42-205ENST00000465073 DNAJC15Q9Y5T4 150 aa20.33■□□□□ 0.85
USP42-205ENST00000465073 PLAUP00749 431 aa20.32■□□□□ 0.84
USP42-205ENST00000465073 LINGO3P0C6S8 592 aa20.32■□□□□ 0.84
USP42-205ENST00000465073 KRT4P19013 534 aa20.32■□□□□ 0.84
USP42-205ENST00000465073 PCSK6P29122 969 aa20.32■□□□□ 0.84
USP42-205ENST00000465073 CD226Q15762 336 aa20.32■□□□□ 0.84
USP42-205ENST00000465073 CCNJQ5T5M9 372 aa20.32■□□□□ 0.84
USP42-205ENST00000465073 KANK2Q63ZY3 851 aa20.32■□□□□ 0.84
USP42-205ENST00000465073 LRIG3Q6UXM1 1119 aa20.32■□□□□ 0.84
USP42-205ENST00000465073 MTERF4Q7Z6M4 381 aaKnown RBP20.32■□□□□ 0.84
USP42-205ENST00000465073 STEAP2Q8NFT2 490 aa20.32■□□□□ 0.84
USP42-205ENST00000465073 FAM120BQ96EK7 910 aaKnown RBP20.32■□□□□ 0.84
USP42-205ENST00000465073 STACQ99469 402 aa20.32■□□□□ 0.84
USP42-205ENST00000465073 GATA5Q9BWX5 397 aaPredicted RBP20.32■□□□□ 0.84
USP42-205ENST00000465073 C12orf49Q9H741 205 aa20.32■□□□□ 0.84
USP42-205ENST00000465073 TRIM13O60858 407 aa20.31■□□□□ 0.84
USP42-205ENST00000465073 BCKDHAP12694 445 aa20.31■□□□□ 0.84
USP42-205ENST00000465073 ELK4P28324 431 aa20.31■□□□□ 0.84
USP42-205ENST00000465073 PRIMA1Q86XR5 153 aa20.31■□□□□ 0.84
USP42-205ENST00000465073 RNF128Q8TEB7 428 aa20.31■□□□□ 0.84
USP42-205ENST00000465073 ROBO4Q8WZ75 1007 aa20.31■□□□□ 0.84
USP42-205ENST00000465073 CPNE4Q96A23 557 aaPredicted RBP20.31■□□□□ 0.84
USP42-205ENST00000465073 OTUB1Q96FW1 271 aaPredicted RBP20.31■□□□□ 0.84
USP42-205ENST00000465073 KLHDC3Q9BQ90 382 aa20.31■□□□□ 0.84
USP42-205ENST00000465073 HOXD1Q9GZZ0 328 aa20.31■□□□□ 0.84
USP42-205ENST00000465073 PIGUQ9H490 435 aa20.31■□□□□ 0.84
USP42-205ENST00000465073 SIRT3Q9NTG7 399 aaPredicted RBP20.31■□□□□ 0.84
USP42-205ENST00000465073 ZCCHC3Q9NUD5 404 aaKnown RBP20.31■□□□□ 0.84
USP42-205ENST00000465073 ATP6V1HQ9UI12 483 aa20.31■□□□□ 0.84
USP42-205ENST00000465073 HEATR5AQ86XA9 2040 aa20.31■□□□□ 0.84
USP42-205ENST00000465073 HMGN2P05204 90 aaKnown RBP20.3■□□□□ 0.84
USP42-205ENST00000465073 FGF4P08620 206 aa20.3■□□□□ 0.84
USP42-205ENST00000465073 NID1P14543 1247 aa20.3■□□□□ 0.84
USP42-205ENST00000465073 EFNA1P20827 205 aaPredicted RBP20.3■□□□□ 0.84
USP42-205ENST00000465073 ATP6V1C1P21283 382 aa20.3■□□□□ 0.84
USP42-205ENST00000465073 ADH6P28332 368 aa20.3■□□□□ 0.84
USP42-205ENST00000465073 SFTPDP35247 375 aa20.3■□□□□ 0.84
USP42-205ENST00000465073 HPCAL1P37235 193 aa20.3■□□□□ 0.84
USP42-205ENST00000465073 PPP2R2BQ00005 443 aa20.3■□□□□ 0.84
USP42-205ENST00000465073 RNPS1Q15287 305 aaKnown RBP20.3■□□□□ 0.84
USP42-205ENST00000465073 GALNTL6Q49A17 601 aa20.3■□□□□ 0.84
USP42-205ENST00000465073 TMEM201Q5SNT2 666 aa20.3■□□□□ 0.84
USP42-205ENST00000465073 EIF1ADQ8N9N8 165 aaKnown RBP20.3■□□□□ 0.84
USP42-205ENST00000465073 ZNF527Q8NB42 609 aa20.3■□□□□ 0.84
USP42-205ENST00000465073 PHOSPHO1Q8TCT1 267 aa20.3■□□□□ 0.84
USP42-205ENST00000465073 CHMP6Q96FZ7 201 aa20.3■□□□□ 0.84
USP42-205ENST00000465073 TACO1Q9BSH4 297 aaKnown RBP20.3■□□□□ 0.84
USP42-205ENST00000465073 USF3Q68DE3 2245 aa20.3■□□□□ 0.84
USP42-205ENST00000465073 SMIM23A6NLE4 172 aa20.3■□□□□ 0.84
USP42-205ENST00000465073 GJE1A6NN92 205 aa20.3■□□□□ 0.84
USP42-205ENST00000465073 SOX30O94993 753 aa20.3■□□□□ 0.84
USP42-205ENST00000465073 RPL3P39023 403 aaKnown RBP20.3■□□□□ 0.84
USP42-205ENST00000465073 ATP5J2P56134 94 aa20.3■□□□□ 0.84
USP42-205ENST00000465073 FOXF1Q12946 379 aa20.3■□□□□ 0.84
USP42-205ENST00000465073 LASP1Q14847 261 aaKnown RBP20.3■□□□□ 0.84
USP42-205ENST00000465073 PCLAFQ15004 111 aa20.3■□□□□ 0.84
USP42-205ENST00000465073 ZNF239Q16600 458 aaKnown RBP20.3■□□□□ 0.84
USP42-205ENST00000465073 DDIASQ8IXT1 998 aa20.3■□□□□ 0.84
USP42-205ENST00000465073 GSPT2Q8IYD1 628 aaKnown RBP20.3■□□□□ 0.84
USP42-205ENST00000465073 UBLCP1Q8WVY7 318 aaPredicted RBP20.3■□□□□ 0.84
USP42-205ENST00000465073 AKAP1Q92667 903 aaKnown RBP eCLIP20.3■□□□□ 0.84
USP42-205ENST00000465073 CDS1Q92903 461 aa20.3■□□□□ 0.84
USP42-205ENST00000465073 S100PBPQ96BU1 408 aa20.3■□□□□ 0.84
USP42-205ENST00000465073 GP6Q9HCN6 339 aa20.3■□□□□ 0.84
USP42-205ENST00000465073 ACTL7BQ9Y614 415 aa20.3■□□□□ 0.84
USP42-205ENST00000465073 DNHD1Q96M86 4753 aa20.29■□□□□ 0.84
USP42-205ENST00000465073 TMEM114B3SHH9 223 aa20.29■□□□□ 0.84
USP42-205ENST00000465073 H3BNH8 94 aa20.29■□□□□ 0.84
USP42-205ENST00000465073 ZNF195O14628 629 aa20.29■□□□□ 0.84
USP42-205ENST00000465073 MAPK1P28482 360 aa20.29■□□□□ 0.84
USP42-205ENST00000465073 SHC1P29353 583 aa20.29■□□□□ 0.84
USP42-205ENST00000465073 SUMO3P55854 103 aaPredicted RBP20.29■□□□□ 0.84
USP42-205ENST00000465073 ZNF117Q03924 483 aa20.29■□□□□ 0.84
USP42-205ENST00000465073 ZNF844Q08AG5 666 aa20.29■□□□□ 0.84
USP42-205ENST00000465073 UGT3A2Q3SY77 523 aa20.29■□□□□ 0.84
USP42-205ENST00000465073 KLHL26Q53HC5 615 aa20.29■□□□□ 0.84
USP42-205ENST00000465073 ADAM5Q6NVV9 412 aa20.29■□□□□ 0.84
USP42-205ENST00000465073 C4orf33Q8N1A6 199 aa20.29■□□□□ 0.84
USP42-205ENST00000465073 GABRG1Q8N1C3 465 aa20.29■□□□□ 0.84
USP42-205ENST00000465073 ABHD3Q8WU67 409 aa20.29■□□□□ 0.84
USP42-205ENST00000465073 ACTRT3Q9BYD9 372 aa20.29■□□□□ 0.84
USP42-205ENST00000465073 KLHL13Q9P2N7 655 aa20.29■□□□□ 0.84
USP42-205ENST00000465073 TRAF6Q9Y4K3 522 aa20.29■□□□□ 0.84
USP42-205ENST00000465073 SNX8Q9Y5X2 465 aa20.29■□□□□ 0.84
USP42-205ENST00000465073 GPC6Q9Y625 555 aaPredicted RBP20.29■□□□□ 0.84
USP42-205ENST00000465073 SCAMP2O15127 329 aaKnown RBP20.28■□□□□ 0.84
USP42-205ENST00000465073 EFNA2O43921 213 aa20.28■□□□□ 0.84
USP42-205ENST00000465073 NUDT14O95848 222 aa20.28■□□□□ 0.84
USP42-205ENST00000465073 P2RX1P51575 399 aa20.28■□□□□ 0.84
USP42-205ENST00000465073 CDC73Q6P1J9 531 aa20.28■□□□□ 0.84
USP42-205ENST00000465073 OR7A2PQ8NGA2 310 aa20.28■□□□□ 0.84
USP42-205ENST00000465073 FBXO27Q8NI29 283 aa20.28■□□□□ 0.84
USP42-205ENST00000465073 TWIST2Q8WVJ9 160 aa20.28■□□□□ 0.84
USP42-205ENST00000465073 PPP3R2Q96LZ3 170 aa20.28■□□□□ 0.84
USP42-205ENST00000465073 USB1Q9BQ65 265 aaKnown RBP20.28■□□□□ 0.84
USP42-205ENST00000465073 SRXN1Q9BYN0 137 aa20.28■□□□□ 0.84
USP42-205ENST00000465073 NGBQ9NPG2 151 aa20.28■□□□□ 0.84
USP42-205ENST00000465073 ICAM5Q9UMF0 924 aa20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms