RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 DEFB119Q8N690 84 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 OR4N2Q8NGD1 307 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 RIT1Q92963 219 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 PEX11GQ96HA9 241 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 KXD1Q9BQD3 176 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 RSPH9Q9H1X1 276 aaPredicted RBP8.06□□□□□ -1.12
USP40-203ENST00000427112 NCKAP1Q9Y2A7 1128 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 LRIT2A6NDA9 550 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 TNFRSF10AO00220 468 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 LILRB5O75023 590 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 TM4SF4P48230 202 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 FOXL2P58012 376 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 PPP1CAP62136 330 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 CDK3Q00526 305 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 C1orf61Q13536 156 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 PDE7AQ13946 482 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 SLC39A5Q6ZMH5 540 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 TMEM91Q6ZNR0 172 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 CPXM2Q8N436 756 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 CLDN22Q8N7P3 220 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 ZNF527Q8NB42 609 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 FCRL1Q96LA6 429 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 RPP25Q9BUL9 199 aaKnown RBP8.06□□□□□ -1.12
USP40-203ENST00000427112 OR52D1Q9H346 318 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 NARFLQ9H6Q4 476 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 SAGE1Q9NXZ1 904 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 GNG8Q9UK08 70 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 DIMT1Q9UNQ2 313 aaKnown RBP8.06□□□□□ -1.12
USP40-203ENST00000427112 GXYLT2A0PJZ3 443 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 BMP7P18075 431 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 LAG3P18627 525 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 ACADLP28330 430 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 TEAD1P28347 426 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 KCNC3Q14003 757 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 DUSP5Q16690 384 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 KLHL22Q53GT1 634 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 NDUFAF7Q7L592 441 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 LUZP2Q86TE4 346 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 PGBD3Q8N328 593 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 MORN4Q8NDC4 146 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 VWCEQ96DN2 955 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 OR14A2Q96R54 314 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 SEC22CQ9BRL7 303 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 SLC38A1Q9H2H9 487 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 MAPRE3Q9UPY8 281 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 ZNF780BQ9Y6R6 833 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 CCL5P13501 91 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 CSNK2A2P19784 350 aaPredicted RBP8.05□□□□□ -1.12
USP40-203ENST00000427112 OR3A3P47888 321 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 MELKQ14680 651 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 SLC25A25Q6KCM7 469 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 TMEM64Q6YI46 380 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 QSOX2Q6ZRP7 698 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 LRRC56Q8IYG6 542 aaPredicted RBP8.05□□□□□ -1.12
USP40-203ENST00000427112 ZNF655Q8N720 491 aaPredicted RBP8.05□□□□□ -1.12
USP40-203ENST00000427112 SPERTQ8NA61 448 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 OR52E2Q8NGJ4 325 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 OR8S1Q8NH09 359 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 OR2L2Q8NH16 312 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 FANK1Q8TC84 345 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 LCN9Q8WX39 176 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 CAMK1GQ96NX5 476 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 TNFRSF13CQ96RJ3 184 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 ULBP3Q9BZM4 244 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 MS4A7Q9GZW8 240 aaPredicted RBP8.05□□□□□ -1.12
USP40-203ENST00000427112 UBQLN3Q9H347 655 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 WDR26Q9H7D7 661 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 C3orf14Q9HBI5 128 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 POLMQ9NP87 494 aaPredicted RBP8.05□□□□□ -1.12
USP40-203ENST00000427112 TMEM5Q9Y2B1 443 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 TEX13CA0A0J9YWL9 993 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 CDHR4A6H8M9 788 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 POM121BA6NF01 834 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 LGALS8O00214 317 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 FOXE1O00358 373 aaPredicted RBP8.05□□□□□ -1.12
USP40-203ENST00000427112 ORC5O43913 435 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 PRNPP04156 253 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 ANKRD34CP0C6C1 535 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 LAMP2P13473 410 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 CPEP16870 476 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 ANXA11P50995 505 aaKnown RBP8.05□□□□□ -1.12
USP40-203ENST00000427112 HMGA2P52926 109 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 SNRPGP62308 76 aaKnown RBP8.05□□□□□ -1.12
USP40-203ENST00000427112 ZNF155Q12901 538 aaPredicted RBP8.05□□□□□ -1.12
USP40-203ENST00000427112 SGCGQ13326 291 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 FAM198BQ6UWH4 519 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 ERN2Q76MJ5 926 aaKnown RBP8.05□□□□□ -1.12
USP40-203ENST00000427112 SIAH3Q8IW03 269 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 FBXO15Q8NCQ5 510 aaPredicted RBP8.05□□□□□ -1.12
USP40-203ENST00000427112 SUN3Q8TAQ9 357 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 APOBEC4Q8WW27 367 aaKnown RBP8.05□□□□□ -1.12
USP40-203ENST00000427112 TBC1D20Q96BZ9 403 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 RNF170Q96K19 258 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 POLDIP3Q9BY77 421 aaKnown RBP8.05□□□□□ -1.12
USP40-203ENST00000427112 ZMAT3Q9HA38 289 aaKnown RBP8.05□□□□□ -1.12
USP40-203ENST00000427112 CACYBPQ9HB71 228 aaKnown RBP8.05□□□□□ -1.12
USP40-203ENST00000427112 NEUROD4Q9HD90 331 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 RBFOX1Q9NWB1 397 aaKnown RBP8.05□□□□□ -1.12
USP40-203ENST00000427112 KLHL28Q9NXS3 571 aa8.05□□□□□ -1.12
USP40-203ENST00000427112 SESN1Q9Y6P5 492 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms