RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 KLHL12Q53G59 568 aa17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 THSD4Q6ZMP0 1018 aa17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 KLHL36Q8N4N3 616 aa17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 CLDN22Q8N7P3 220 aa17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 TXNDC15Q96J42 360 aa17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 HS6ST2Q96MM7 605 aa17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 PTCHD1Q96NR3 888 aa17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 GSDMCQ9BYG8 508 aa17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 SIAEQ9HAT2 523 aa17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 KRCC1Q9NPI7 259 aaPredicted RBP17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 USP36Q9P275 1121 aaKnown RBP17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 COMMD3Q9UBI1 195 aa17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 LRP4O75096 1905 aa17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 TRAV27A0A087WT01 109 aa17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 A0A087WV62 115 aa17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 A0A1W2PQ09 198 aa17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 OR10H2O60403 315 aa17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 RFPL3O75679 317 aa17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 LYPD3O95274 346 aa17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 HMGN1P05114 100 aa17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 SAGP10523 405 aaPredicted RBP17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 IL7P13232 177 aa17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 CTSEP14091 401 aa17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 NKX2-5P52952 324 aaPredicted RBP17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 HHEXQ03014 270 aa17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 KRR1Q13601 381 aaKnown RBP17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 ARMC4Q5T2S8 1044 aa17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 Q6ZS52 159 aa17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 IL17RDQ8NFM7 739 aa17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 OR51A7Q8NH64 312 aa17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 CNOT9Q92600 299 aaKnown RBP17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 WDFY2Q96P53 400 aa17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 MED17Q9NVC6 651 aa17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 NDRG2Q9UN36 371 aaKnown RBP17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 EXOGQ9Y2C4 368 aaKnown RBP17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 GSTK1Q9Y2Q3 226 aa17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 HS3ST3A1Q9Y663 406 aa17.01■□□□□ 0.31
SHKBP1-201ENST00000291842 SHISA3A0PJX4 238 aa17■□□□□ 0.31
SHKBP1-201ENST00000291842 FABP12A6NFH5 140 aa17■□□□□ 0.31
SHKBP1-201ENST00000291842 B4DGG1 531 aa17■□□□□ 0.31
SHKBP1-201ENST00000291842 HRKO00198 91 aa17■□□□□ 0.31
SHKBP1-201ENST00000291842 BRINP1O60477 761 aa17■□□□□ 0.31
SHKBP1-201ENST00000291842 ADAM11O75078 769 aa17■□□□□ 0.31
SHKBP1-201ENST00000291842 REM1O75628 298 aa17■□□□□ 0.31
SHKBP1-201ENST00000291842 CBX7O95931 251 aa17■□□□□ 0.31
SHKBP1-201ENST00000291842 TBXA2RP21731 343 aa17■□□□□ 0.31
SHKBP1-201ENST00000291842 RABIFP47224 123 aa17■□□□□ 0.31
SHKBP1-201ENST00000291842 SLC16A1P53985 500 aa17■□□□□ 0.31
SHKBP1-201ENST00000291842 EXOSC6Q5RKV6 272 aaKnown RBP17■□□□□ 0.31
SHKBP1-201ENST00000291842 PDZK1Q5T2W1 519 aa17■□□□□ 0.31
SHKBP1-201ENST00000291842 ABI3BPQ7Z7G0 1075 aa17■□□□□ 0.31
SHKBP1-201ENST00000291842 AVL9Q8NBF6 648 aa17■□□□□ 0.31
SHKBP1-201ENST00000291842 TOR1AIP2Q8NFQ8 470 aa17■□□□□ 0.31
SHKBP1-201ENST00000291842 OR52L1Q8NGH7 329 aa17■□□□□ 0.31
SHKBP1-201ENST00000291842 SMAP2Q8WU79 429 aaPredicted RBP17■□□□□ 0.31
SHKBP1-201ENST00000291842 BPIFA2Q96DR5 249 aa17■□□□□ 0.31
SHKBP1-201ENST00000291842 TOE1Q96GM8 510 aaKnown RBP17■□□□□ 0.31
SHKBP1-201ENST00000291842 MSLNLQ96KJ4 702 aa17■□□□□ 0.31
SHKBP1-201ENST00000291842 ISYNA1Q9NPH2 558 aa17■□□□□ 0.31
SHKBP1-201ENST00000291842 HCN3Q9P1Z3 774 aa17■□□□□ 0.31
SHKBP1-201ENST00000291842 MMP17Q9ULZ9 603 aa17■□□□□ 0.31
SHKBP1-201ENST00000291842 SATB2Q9UPW6 733 aa17■□□□□ 0.31
SHKBP1-201ENST00000291842 A0A0A6YYC8 382 aaPredicted RBP17■□□□□ 0.31
SHKBP1-201ENST00000291842 C12orf71A8MTZ7 269 aa17■□□□□ 0.31
SHKBP1-201ENST00000291842 PRAMEF26H0Y7S4 382 aa17■□□□□ 0.31
SHKBP1-201ENST00000291842 I3L1I5 382 aaPredicted RBP17■□□□□ 0.31
SHKBP1-201ENST00000291842 BHLHE40O14503 412 aa17■□□□□ 0.31
SHKBP1-201ENST00000291842 CHST10O43529 356 aa17■□□□□ 0.31
SHKBP1-201ENST00000291842 IGHA1P01876 353 aa17■□□□□ 0.31
SHKBP1-201ENST00000291842 THEGLP0DJG4 465 aa17■□□□□ 0.31
SHKBP1-201ENST00000291842 BMP7P18075 431 aa17■□□□□ 0.31
SHKBP1-201ENST00000291842 CASP3P42574 277 aa17■□□□□ 0.31
SHKBP1-201ENST00000291842 FZD5Q13467 585 aa17■□□□□ 0.31
SHKBP1-201ENST00000291842 ERV3-1Q14264 604 aa17■□□□□ 0.31
SHKBP1-201ENST00000291842 MARCH9Q86YJ5 346 aa17■□□□□ 0.31
SHKBP1-201ENST00000291842 VWA5B2Q8N398 1253 aa17■□□□□ 0.31
SHKBP1-201ENST00000291842 TMEM99Q8N816 258 aa17■□□□□ 0.31
SHKBP1-201ENST00000291842 BRIX1Q8TDN6 353 aaKnown RBP17■□□□□ 0.31
SHKBP1-201ENST00000291842 STACQ99469 402 aa17■□□□□ 0.31
SHKBP1-201ENST00000291842 IFT27Q9BW83 186 aa17■□□□□ 0.31
SHKBP1-201ENST00000291842 MEPEQ9NQ76 525 aaPredicted RBP17■□□□□ 0.31
SHKBP1-201ENST00000291842 POU2F3Q9UKI9 436 aa17■□□□□ 0.31
SHKBP1-201ENST00000291842 MN1Q10571 1320 aaPredicted RBP17■□□□□ 0.31
SHKBP1-201ENST00000291842 SLC35F4A4IF30 521 aa16.99■□□□□ 0.31
SHKBP1-201ENST00000291842 TMCC2O75069 709 aa16.99■□□□□ 0.31
SHKBP1-201ENST00000291842 PAICSP22234 425 aaKnown RBP16.99■□□□□ 0.31
SHKBP1-201ENST00000291842 RFX2P48378 723 aa16.99■□□□□ 0.31
SHKBP1-201ENST00000291842 FZD2Q14332 565 aa16.99■□□□□ 0.31
SHKBP1-201ENST00000291842 NNATQ16517 81 aa16.99■□□□□ 0.31
SHKBP1-201ENST00000291842 GLYR1Q49A26 553 aaPredicted RBP16.99■□□□□ 0.31
SHKBP1-201ENST00000291842 VASNQ6EMK4 673 aa16.99■□□□□ 0.31
SHKBP1-201ENST00000291842 ZNF322Q6U7Q0 402 aaPredicted RBP16.99■□□□□ 0.31
SHKBP1-201ENST00000291842 GATAD2AQ86YP4 633 aa16.99■□□□□ 0.31
SHKBP1-201ENST00000291842 UBE2J2Q8N2K1 259 aa16.99■□□□□ 0.31
SHKBP1-201ENST00000291842 SLC44A3Q8N4M1 653 aa16.99■□□□□ 0.31
SHKBP1-201ENST00000291842 CTHRC1Q96CG8 243 aa16.99■□□□□ 0.31
SHKBP1-201ENST00000291842 TMCO6Q96DC7 493 aa16.99■□□□□ 0.31
SHKBP1-201ENST00000291842 GPR174Q9BXC1 333 aa16.99■□□□□ 0.31
SHKBP1-201ENST00000291842 OR51V1Q9H2C8 321 aa16.99■□□□□ 0.31
SHKBP1-201ENST00000291842 MALT1Q9UDY8 824 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms