RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 DMRTB1Q96MA1 342 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 CMTM3Q96MX0 182 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 MUS81Q96NY9 551 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 MTERF1Q99551 399 aaKnown RBP7.37□□□□□ -1.23
VPS13D-211ENST00000543710 MGLLQ99685 303 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 SYT11Q9BT88 431 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 FUNDC2Q9BWH2 189 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 SRA1Q9HD15 236 aaKnown RBP7.37□□□□□ -1.23
VPS13D-211ENST00000543710 GJD2Q9UKL4 321 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 PCP4L1A6NKN8 68 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 RAC2P15153 192 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 GPX3P22352 226 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 MRPL19P49406 292 aaKnown RBP7.37□□□□□ -1.23
VPS13D-211ENST00000543710 CSNK1EP49674 416 aaKnown RBP7.37□□□□□ -1.23
VPS13D-211ENST00000543710 TAS2R19P59542 299 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 CDK3Q00526 305 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 C19orf48Q6RUI8 117 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 OR2L13Q8N349 312 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 APOBEC4Q8WW27 367 aaKnown RBP7.37□□□□□ -1.23
VPS13D-211ENST00000543710 ARRDC3Q96B67 414 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 SFXN2Q96NB2 322 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 WACQ9BTA9 647 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 FOXQ1Q9C009 403 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 DMRT3Q9NQL9 472 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 TAS2R3Q9NYW6 316 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 DLGAP4Q9Y2H0 992 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 EMC9Q9Y3B6 208 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 A0A0J9YY10 115 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 A0A1W2PPL8 197 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 C17orf112F2Z3M2 114 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 I3L521 148 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 PAK4O96013 591 aaPredicted RBP7.37□□□□□ -1.23
VPS13D-211ENST00000543710 AHCYP23526 432 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 ZNF140P52738 457 aaPredicted RBP7.37□□□□□ -1.23
VPS13D-211ENST00000543710 TBPL1P62380 186 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 DEFB133Q30KQ1 61 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 TMEM201Q5SNT2 666 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 TMEM244Q5VVB8 128 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 GALNTL5Q7Z4T8 443 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 IQCF2Q8IXL9 164 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 SLC35F3Q8IY50 421 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 TCEANCQ8N8B7 351 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 SAMD12Q8N8I0 201 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 OR5J2Q8NH18 312 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 TEPSINQ96N21 525 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 CRISPLD2Q9H0B8 497 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 TPK1Q9H3S4 243 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 C2orf42Q9NWW7 574 aa7.37□□□□□ -1.23
VPS13D-211ENST00000543710 FAM230AA0A1W2PPH8 454 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 OR6C74A6NCV1 312 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 VSTM2BA6NLU5 285 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 H3BMQ9 156 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 BMXP51813 675 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 PLA2G16P53816 162 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 MPP2Q14168 576 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 KCNIP4Q6PIL6 250 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 GAREM2Q75VX8 874 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 KDM1BQ8NB78 822 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 OR6Q1Q8NGQ2 317 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 CRYGNQ8WXF5 182 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 GATA6Q92908 595 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 TRIM43Q96BQ3 446 aaPredicted RBP7.36□□□□□ -1.23
VPS13D-211ENST00000543710 MSI2Q96DH6 328 aaKnown RBP7.36□□□□□ -1.23
VPS13D-211ENST00000543710 COG8Q96MW5 612 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 CDK15Q96Q40 435 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 ZNF334Q9HCZ1 680 aaPredicted RBP7.36□□□□□ -1.23
VPS13D-211ENST00000543710 GALPQ9UBC7 116 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 KLK4Q9Y5K2 254 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 POU2F1P14859 743 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 PPP3CBP16298 524 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 GABRA5P31644 462 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 ACVRL1P37023 503 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 KIR2DL3P43628 341 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 CLCNKAP51800 687 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 RRAS2P62070 204 aaPredicted RBP7.36□□□□□ -1.23
VPS13D-211ENST00000543710 BTG1P62324 171 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 FAM26DQ5JW98 314 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 PTRH1Q86Y79 214 aaKnown RBP7.36□□□□□ -1.23
VPS13D-211ENST00000543710 NAXDQ8IW45 347 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 UEVLDQ8IX04 471 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 ZNF283Q8N7M2 679 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 BRIX1Q8TDN6 353 aaKnown RBP7.36□□□□□ -1.23
VPS13D-211ENST00000543710 ZFPM2Q8WW38 1151 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 OIT3Q8WWZ8 545 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 MTCH2Q9Y6C9 303 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 RNF215Q9Y6U7 377 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 EEF1E1O43324 174 aaKnown RBP7.36□□□□□ -1.23
VPS13D-211ENST00000543710 MYOGP15173 224 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 PRKCAP17252 672 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 AZGP1P25311 298 aaKnown RBP7.36□□□□□ -1.23
VPS13D-211ENST00000543710 PLCXD2Q0VAA5 305 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 SLAMF1Q13291 335 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 CRTC1Q6UUV9 634 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 ARSKQ6UWY0 536 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 OR6V1Q8N148 313 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 CPEB3Q8NE35 698 aaKnown RBP7.36□□□□□ -1.23
VPS13D-211ENST00000543710 OR6K2Q8NGY2 324 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 STK35Q8TDR2 534 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 RLN3Q8WXF3 142 aa7.36□□□□□ -1.23
VPS13D-211ENST00000543710 UPRTQ96BW1 309 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 102 ms