RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 DUX4L2P0CJ85 424 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 DUX4L3P0CJ86 424 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 DUX4L4P0CJ87 422 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 DUX4L5P0CJ88 424 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 DUX4L6P0CJ89 424 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 DUX4L7P0CJ90 424 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 PSMB1P20618 241 aaKnown RBP12□□□□□ -0.49
SFSWAP-209ENST00000540469 CBX5P45973 191 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 FNTBP49356 437 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 CCR8P51685 355 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 POLR2LP62875 67 aaKnown RBP12□□□□□ -0.49
SFSWAP-209ENST00000540469 Q6ZVU0 165 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 TAS1R1Q7RTX1 841 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 SLC9B2Q86UD5 537 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 ZNF433Q8N7K0 673 aaPredicted RBP12□□□□□ -0.49
SFSWAP-209ENST00000540469 OR4D9Q8NGE8 314 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 OR13C5Q8NGS8 318 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 ABHD4Q8TB40 342 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 CAMK1GQ96NX5 476 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 C11orf49Q9H6J7 331 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 DUX4Q9UBX2 424 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 LIPT1Q9Y234 373 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 ANXA2P2A6NMY6 339 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 SURF4O15260 269 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 FLRT2O43155 660 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 HMGN1P05114 100 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 SLC11A1P49279 550 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 AADACL4Q5VUY2 407 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 VASNQ6EMK4 673 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 FAM83HQ6ZRV2 1179 aaPredicted RBP12□□□□□ -0.49
SFSWAP-209ENST00000540469 HSD11B1LQ7Z5J1 315 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 SERPINA12Q8IW75 414 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 ANKRD53Q8N9V6 530 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 OR52L1Q8NGH7 329 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 MS4A4AQ96JQ5 239 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 LYSMD1Q96S90 227 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 C7orf50Q9BRJ6 194 aaKnown RBP12□□□□□ -0.49
SFSWAP-209ENST00000540469 ORAI3Q9BRQ5 295 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 PELOQ9BRX2 385 aaKnown RBP12□□□□□ -0.49
SFSWAP-209ENST00000540469 GMEB2Q9UKD1 530 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 AK6Q9Y3D8 172 aaKnown RBP12□□□□□ -0.49
SFSWAP-209ENST00000540469 Q9Y3F1 56 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 DOCK6Q96HP0 2047 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 UBE2QL1A1L167 161 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 GMDSO60547 372 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 WDPCPO95876 746 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 RLN1P04808 185 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 UGT2B7P16662 529 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 S100A11P31949 105 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 RAD52P43351 418 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 ANXA11P50995 505 aaKnown RBP12□□□□□ -0.49
SFSWAP-209ENST00000540469 NCBP2P52298 156 aaKnown RBP eCLIP12□□□□□ -0.498e-14■■■■□ 21.9
SFSWAP-209ENST00000540469 E2F1Q01094 437 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 TAF1CQ15572 869 aaPredicted RBP12□□□□□ -0.49
SFSWAP-209ENST00000540469 TXNDC8Q6A555 127 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 C22orf39Q6P5X5 142 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 RTN4RL1Q86UN2 441 aaPredicted RBP12□□□□□ -0.49
SFSWAP-209ENST00000540469 RASGEF1AQ8N9B8 481 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 ZNF485Q8NCK3 441 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 ALG14Q96F25 216 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 TMEM138Q9NPI0 162 aa12□□□□□ -0.49
SFSWAP-209ENST00000540469 AKAP7Q9P0M2 348 aaPredicted RBP12□□□□□ -0.49
SFSWAP-209ENST00000540469 H7C2Y5 167 aa11.99□□□□□ -0.49
SFSWAP-209ENST00000540469 PRAF2O60831 178 aa11.99□□□□□ -0.49
SFSWAP-209ENST00000540469 CBX7O95931 251 aa11.99□□□□□ -0.49
SFSWAP-209ENST00000540469 ASGR1P07306 291 aa11.99□□□□□ -0.49
SFSWAP-209ENST00000540469 BMP7P18075 431 aa11.99□□□□□ -0.49
SFSWAP-209ENST00000540469 KHKP50053 298 aa11.99□□□□□ -0.49
SFSWAP-209ENST00000540469 MMP15P51511 669 aa11.99□□□□□ -0.49
SFSWAP-209ENST00000540469 GPR85P60893 370 aa11.99□□□□□ -0.49
SFSWAP-209ENST00000540469 FAAP20Q6NZ36 180 aa11.99□□□□□ -0.49
SFSWAP-209ENST00000540469 APOOLQ6UXV4 268 aa11.99□□□□□ -0.49
SFSWAP-209ENST00000540469 TPRA1Q86W33 373 aa11.99□□□□□ -0.49
SFSWAP-209ENST00000540469 SCARB1Q8WTV0 552 aa11.99□□□□□ -0.49
SFSWAP-209ENST00000540469 SMAP2Q8WU79 429 aaPredicted RBP11.99□□□□□ -0.49
SFSWAP-209ENST00000540469 TIFAQ96CG3 184 aa11.99□□□□□ -0.49
SFSWAP-209ENST00000540469 C4orf36Q96KX1 117 aa11.99□□□□□ -0.49
SFSWAP-209ENST00000540469 PRELID3BQ9Y3B1 194 aa11.99□□□□□ -0.49
SFSWAP-209ENST00000540469 E9PI62 339 aa11.99□□□□□ -0.49
SFSWAP-209ENST00000540469 NDUFV2P19404 249 aa11.99□□□□□ -0.49
SFSWAP-209ENST00000540469 TBXA2RP21731 343 aa11.99□□□□□ -0.49
SFSWAP-209ENST00000540469 AP3S2P59780 193 aa11.99□□□□□ -0.49
SFSWAP-209ENST00000540469 IKZF1Q13422 519 aa11.99□□□□□ -0.49
SFSWAP-209ENST00000540469 FGL2Q14314 439 aa11.99□□□□□ -0.49
SFSWAP-209ENST00000540469 GK2Q14410 553 aaPredicted RBP11.99□□□□□ -0.49
SFSWAP-209ENST00000540469 ETFDHQ16134 617 aa11.99□□□□□ -0.49
SFSWAP-209ENST00000540469 PRAMEF14Q5SWL7 426 aa11.99□□□□□ -0.49
SFSWAP-209ENST00000540469 PRAMEF13Q5VWM6 474 aa11.99□□□□□ -0.49
SFSWAP-209ENST00000540469 RGS7BPQ6MZT1 257 aaPredicted RBP11.99□□□□□ -0.49
SFSWAP-209ENST00000540469 OVCH2Q7RTZ1 564 aa11.99□□□□□ -0.49
SFSWAP-209ENST00000540469 CHST14Q8NCH0 376 aa11.99□□□□□ -0.49
SFSWAP-209ENST00000540469 CNOT9Q92600 299 aaKnown RBP11.99□□□□□ -0.49
SFSWAP-209ENST00000540469 REG4Q9BYZ8 158 aa11.99□□□□□ -0.49
SFSWAP-209ENST00000540469 NOX3Q9HBY0 568 aa11.99□□□□□ -0.49
SFSWAP-209ENST00000540469 SEMA4GQ9NTN9 838 aa11.99□□□□□ -0.49
SFSWAP-209ENST00000540469 RNF215Q9Y6U7 377 aa11.99□□□□□ -0.49
SFSWAP-209ENST00000540469 PLPP1O14494 284 aa11.99□□□□□ -0.49
SFSWAP-209ENST00000540469 FMO6PO60774 539 aa11.99□□□□□ -0.49
SFSWAP-209ENST00000540469 SDC3O75056 442 aa11.99□□□□□ -0.49
SFSWAP-209ENST00000540469 RPLP2P05387 115 aaKnown RBP11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms