RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 WDSUB1Q8N9V3 476 aa27.02■■□□□ 1.92
LIMCH1-211ENST00000509638 OR1J4Q8NGS1 313 aa27.02■■□□□ 1.92
LIMCH1-211ENST00000509638 OR52P1PQ8NH57 321 aa27.02■■□□□ 1.92
LIMCH1-211ENST00000509638 C1orf21Q9H246 121 aa27.02■■□□□ 1.92
LIMCH1-211ENST00000509638 SDHAF3Q9NRP4 125 aa27.02■■□□□ 1.92
LIMCH1-211ENST00000509638 ELOVL7A1L3X0 281 aa27.01■■□□□ 1.92
LIMCH1-211ENST00000509638 CLDN24A6NM45 220 aa27.01■■□□□ 1.92
LIMCH1-211ENST00000509638 FAM166BA8MTA8 275 aa27.01■■□□□ 1.92
LIMCH1-211ENST00000509638 B4DXG7 233 aa27.01■■□□□ 1.92
LIMCH1-211ENST00000509638 GLSO94925 669 aaPredicted RBP27.01■■□□□ 1.92
LIMCH1-211ENST00000509638 ETS2P15036 469 aa27.01■■□□□ 1.92
LIMCH1-211ENST00000509638 IL7RP16871 459 aa27.01■■□□□ 1.92
LIMCH1-211ENST00000509638 C17orf67Q0P5P2 114 aa27.01■■□□□ 1.92
LIMCH1-211ENST00000509638 FGFBP1Q14512 234 aa27.01■■□□□ 1.92
LIMCH1-211ENST00000509638 RNFT1Q5M7Z0 435 aa27.01■■□□□ 1.92
LIMCH1-211ENST00000509638 SAMD4BQ5PRF9 694 aaKnown RBP27.01■■□□□ 1.92
LIMCH1-211ENST00000509638 INTS11Q5TA45 600 aaKnown RBP27.01■■□□□ 1.92
LIMCH1-211ENST00000509638 MISPQ8IVT2 679 aa27.01■■□□□ 1.92
LIMCH1-211ENST00000509638 DUSP19Q8WTR2 217 aa27.01■■□□□ 1.92
LIMCH1-211ENST00000509638 GNRHR2Q96P88 292 aa27.01■■□□□ 1.92
LIMCH1-211ENST00000509638 ZNF703Q9H7S9 590 aaPredicted RBP27.01■■□□□ 1.92
LIMCH1-211ENST00000509638 NTNG1Q9Y2I2 539 aa27.01■■□□□ 1.92
LIMCH1-211ENST00000509638 GPC6Q9Y625 555 aaPredicted RBP27.01■■□□□ 1.92
LIMCH1-211ENST00000509638 PRB1P04280 392 aa27.01■■□□□ 1.91
LIMCH1-211ENST00000509638 UBL4AP11441 157 aa27.01■■□□□ 1.91
LIMCH1-211ENST00000509638 NID1P14543 1247 aa27.01■■□□□ 1.91
LIMCH1-211ENST00000509638 NDUFAF6Q330K2 333 aa27.01■■□□□ 1.91
LIMCH1-211ENST00000509638 LIN52Q52LA3 116 aa27.01■■□□□ 1.91
LIMCH1-211ENST00000509638 VRK2Q86Y07 508 aa27.01■■□□□ 1.91
LIMCH1-211ENST00000509638 PLCZ1Q86YW0 608 aa27.01■■□□□ 1.91
LIMCH1-211ENST00000509638 CISD2Q8N5K1 135 aaKnown RBP27.01■■□□□ 1.91
LIMCH1-211ENST00000509638 SH3YL1Q96HL8 342 aaPredicted RBP27.01■■□□□ 1.91
LIMCH1-211ENST00000509638 ZNF607Q96SK3 696 aa27.01■■□□□ 1.91
LIMCH1-211ENST00000509638 B4GALT7Q9UBV7 327 aa27.01■■□□□ 1.91
LIMCH1-211ENST00000509638 RALYQ9UKM9 306 aaKnown RBP27.01■■□□□ 1.91
LIMCH1-211ENST00000509638 ZNF443Q9Y2A4 671 aaPredicted RBP27.01■■□□□ 1.91
LIMCH1-211ENST00000509638 C15orf41Q9Y2V0 281 aa27.01■■□□□ 1.91
LIMCH1-211ENST00000509638 PCNX3Q9H6A9 2034 aa27■■□□□ 1.91
LIMCH1-211ENST00000509638 SVILO95425 2214 aa27■■□□□ 1.91
LIMCH1-211ENST00000509638 TTLL8A6PVC2 850 aa27■■□□□ 1.91
LIMCH1-211ENST00000509638 ACOT7O00154 380 aa27■■□□□ 1.91
LIMCH1-211ENST00000509638 RFPL3SP0C7P2 107 aa27■■□□□ 1.91
LIMCH1-211ENST00000509638 VEZF1Q14119 521 aa27■■□□□ 1.91
LIMCH1-211ENST00000509638 EIF3MQ7L2H7 374 aaKnown RBP27■■□□□ 1.91
LIMCH1-211ENST00000509638 SLC7A6OSQ96CW6 309 aaPredicted RBP27■■□□□ 1.91
LIMCH1-211ENST00000509638 FBXL2Q9UKC9 423 aa27■■□□□ 1.91
LIMCH1-211ENST00000509638 FREM3P0C091 2139 aa26.99■■□□□ 1.91
LIMCH1-211ENST00000509638 EBAG9O00559 213 aa26.99■■□□□ 1.91
LIMCH1-211ENST00000509638 TFECO14948 347 aaPredicted RBP26.99■■□□□ 1.91
LIMCH1-211ENST00000509638 HCRTR2O43614 444 aa26.99■■□□□ 1.91
LIMCH1-211ENST00000509638 GMFGO60234 142 aa26.99■■□□□ 1.91
LIMCH1-211ENST00000509638 GCM2O75603 506 aaPredicted RBP26.99■■□□□ 1.91
LIMCH1-211ENST00000509638 CSTAP01040 98 aa26.99■■□□□ 1.91
LIMCH1-211ENST00000509638 THBS1P07996 1170 aa26.99■■□□□ 1.91
LIMCH1-211ENST00000509638 PABPC4LP0CB38 370 aaKnown RBP26.99■■□□□ 1.91
LIMCH1-211ENST00000509638 PPIAP62937 165 aaKnown RBP26.99■■□□□ 1.91
LIMCH1-211ENST00000509638 ZNF117Q03924 483 aa26.99■■□□□ 1.91
LIMCH1-211ENST00000509638 SOWAHCQ53LP3 525 aaPredicted RBP26.99■■□□□ 1.91
LIMCH1-211ENST00000509638 ZNF836Q6ZNA1 936 aa26.99■■□□□ 1.91
LIMCH1-211ENST00000509638 SLC22A16Q86VW1 577 aa26.99■■□□□ 1.91
LIMCH1-211ENST00000509638 FAM156AQ8NDB6 213 aa26.99■■□□□ 1.91
LIMCH1-211ENST00000509638 OR4K17Q8NGC6 315 aa26.99■■□□□ 1.91
LIMCH1-211ENST00000509638 ST6GALNAC1Q9NSC7 600 aaPredicted RBP26.99■■□□□ 1.91
LIMCH1-211ENST00000509638 SLC35A3Q9Y2D2 325 aa26.99■■□□□ 1.91
LIMCH1-211ENST00000509638 CARD8Q9Y2G2 431 aa26.99■■□□□ 1.91
LIMCH1-211ENST00000509638 HEATR5AQ86XA9 2040 aa26.99■■□□□ 1.91
LIMCH1-211ENST00000509638 IGLV3-32A0A0A0MS00 114 aa26.98■■□□□ 1.91
LIMCH1-211ENST00000509638 GTPBP1O00178 669 aaKnown RBP26.98■■□□□ 1.91
LIMCH1-211ENST00000509638 OIP5O43482 229 aa26.98■■□□□ 1.91
LIMCH1-211ENST00000509638 BCAS1O75363 584 aaPredicted RBP26.98■■□□□ 1.91
LIMCH1-211ENST00000509638 PDE9AO76083 593 aa26.98■■□□□ 1.91
LIMCH1-211ENST00000509638 CRYABP02511 175 aaKnown RBP26.98■■□□□ 1.91
LIMCH1-211ENST00000509638 TCN1P20061 433 aaPredicted RBP26.98■■□□□ 1.91
LIMCH1-211ENST00000509638 KCNJ10P78508 379 aa26.98■■□□□ 1.91
LIMCH1-211ENST00000509638 LARS2Q15031 903 aaKnown RBP26.98■■□□□ 1.91
LIMCH1-211ENST00000509638 HYAL4Q2M3T9 481 aa26.98■■□□□ 1.91
LIMCH1-211ENST00000509638 MRPL2Q5T653 305 aaKnown RBP26.98■■□□□ 1.91
LIMCH1-211ENST00000509638 TMEM251Q8N6I4 163 aa26.98■■□□□ 1.91
LIMCH1-211ENST00000509638 TMCO5AQ8N6Q1 288 aa26.98■■□□□ 1.91
LIMCH1-211ENST00000509638 FADS6Q8N9I5 356 aa26.98■■□□□ 1.91
LIMCH1-211ENST00000509638 SNRNP40Q96DI7 357 aaKnown RBP26.98■■□□□ 1.91
LIMCH1-211ENST00000509638 SPATA5L1Q9BVQ7 753 aa26.98■■□□□ 1.91
LIMCH1-211ENST00000509638 TSPAN10Q9H1Z9 355 aaPredicted RBP26.98■■□□□ 1.91
LIMCH1-211ENST00000509638 HHATLQ9HCP6 504 aa26.98■■□□□ 1.91
LIMCH1-211ENST00000509638 MED11Q9P086 117 aa26.98■■□□□ 1.91
LIMCH1-211ENST00000509638 SEC14L3Q9UDX4 400 aa26.98■■□□□ 1.91
LIMCH1-211ENST00000509638 IFT52Q9Y366 437 aa26.98■■□□□ 1.91
LIMCH1-211ENST00000509638 GYG2O15488 501 aa26.97■■□□□ 1.91
LIMCH1-211ENST00000509638 ZNF264O43296 627 aa26.97■■□□□ 1.91
LIMCH1-211ENST00000509638 OPN1SWP03999 348 aa26.97■■□□□ 1.91
LIMCH1-211ENST00000509638 UBTFL6P0CB48 400 aaPredicted RBP26.97■■□□□ 1.91
LIMCH1-211ENST00000509638 HSD17B1P14061 328 aa26.97■■□□□ 1.91
LIMCH1-211ENST00000509638 GDF1P27539 372 aa26.97■■□□□ 1.91
LIMCH1-211ENST00000509638 ADH7P40394 386 aa26.97■■□□□ 1.91
LIMCH1-211ENST00000509638 MAGEA5P43359 124 aa26.97■■□□□ 1.91
LIMCH1-211ENST00000509638 ALDH6A1Q02252 535 aaKnown RBP26.97■■□□□ 1.91
LIMCH1-211ENST00000509638 PLAURQ03405 335 aa26.97■■□□□ 1.91
LIMCH1-211ENST00000509638 SKP2Q13309 424 aa26.97■■□□□ 1.91
LIMCH1-211ENST00000509638 DNAL1Q4LDG9 190 aa26.97■■□□□ 1.91
LIMCH1-211ENST00000509638 ZNF311Q5JNZ3 666 aa26.97■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms