RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 ABHD1Q96SE0 405 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 CCDC32Q9BV29 185 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 SLC28A3Q9HAS3 691 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 MOSPD3O75425 235 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 RGS11O94810 467 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 ZIC2O95409 532 aaPredicted RBP8.07□□□□□ -1.12
USP40-203ENST00000427112 TYRP1P17643 537 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 POLR2CP19387 275 aaPredicted RBP8.07□□□□□ -1.12
USP40-203ENST00000427112 LIMS1P48059 325 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 NTRK2Q16620 822 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 GLYR1Q49A26 553 aaPredicted RBP8.07□□□□□ -1.12
USP40-203ENST00000427112 SSX6Q7RTT6 188 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 GRAMD2AQ8IUY3 354 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 TOR1AIP2Q8NFQ8 470 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 TIFAQ96CG3 184 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 ATF6BQ99941 703 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 ALG8Q9BVK2 526 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 SGPP1Q9BX95 441 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 NXF2Q9GZY0 626 aaKnown RBP8.07□□□□□ -1.12
USP40-203ENST00000427112 KCNK15Q9H427 330 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 CNOT2Q9NZN8 540 aaKnown RBP8.07□□□□□ -1.12
USP40-203ENST00000427112 SH3D21A4FU49 640 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 C17orf51A8MQB3 221 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 ZNF780AO75290 641 aaPredicted RBP8.07□□□□□ -1.12
USP40-203ENST00000427112 GPANK1O95872 356 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 RPLP2P05387 115 aaKnown RBP8.07□□□□□ -1.12
USP40-203ENST00000427112 CTSBP07858 339 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 ZNF888P0CJ79 500 aaPredicted RBP8.07□□□□□ -1.12
USP40-203ENST00000427112 TALDO1P37837 337 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 MLF2Q15773 248 aaPredicted RBP8.07□□□□□ -1.12
USP40-203ENST00000427112 DEFB115Q30KQ5 88 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 XKRXQ6PP77 449 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 VITQ6UXI7 678 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 MSANTD1Q6ZTZ1 278 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 DPPA4Q7L190 304 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 LINGO2Q7L985 606 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 ZAR1Q86SH2 424 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 PIAS4Q8N2W9 510 aaPredicted RBP8.07□□□□□ -1.12
USP40-203ENST00000427112 FAM98AQ8NCA5 519 aaKnown RBP8.07□□□□□ -1.12
USP40-203ENST00000427112 OR7G2Q8NG99 324 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 OR7G1Q8NGA0 311 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 OR5J2Q8NH18 312 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 DERL3Q96Q80 235 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 THAP7Q9BT49 309 aaPredicted RBP8.07□□□□□ -1.12
USP40-203ENST00000427112 ADAM18Q9Y3Q7 739 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 WDR45Q9Y484 360 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 PCDHGB2Q9Y5G2 931 aa8.07□□□□□ -1.12
USP40-203ENST00000427112 SLC9B1P1A6NJY1 282 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 MPZL2O60487 215 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 UGDHO60701 494 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 KDM4BO94953 1096 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 THY1P04216 161 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 CSN2P05814 226 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 PTPN2P17706 415 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 ACSL1P33121 698 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 DDOSTP39656 456 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 ADH7P40394 386 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 EPHA5P54756 1037 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 PLK5Q496M5 336 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 FAM219AQ8IW50 185 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 DCUN1D3Q8IWE4 304 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 OR11H4Q8NGC9 324 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 OR52E1Q8NGJ3 308 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 TRMT10AQ8TBZ6 339 aaKnown RBP8.06□□□□□ -1.12
USP40-203ENST00000427112 TMEM163Q8TC26 289 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 SLC35A4Q96G79 324 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 SLC41A3Q96GZ6 507 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 SLX1AQ9BQ83 275 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 OR52A5Q9H2C5 316 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 ING3Q9NXR8 418 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 APOBEC3BQ9UH17 382 aaKnown RBP8.06□□□□□ -1.12
USP40-203ENST00000427112 MRPS2Q9Y399 296 aaKnown RBP8.06□□□□□ -1.12
USP40-203ENST00000427112 PLXNB3Q9ULL4 1909 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 ALPK3Q96L96 1907 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 RAB19A4D1S5 217 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 CENPBD1B2RD01 187 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 ATP6V1G2-DDX39BF2Z307 99 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 PRODHO43272 600 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 PROM1O43490 865 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 OLFM2O95897 454 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 ACP2P11117 423 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 MAKP20794 623 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 HSD3B2P26439 372 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 RPL4P36578 427 aaKnown RBP8.06□□□□□ -1.12
USP40-203ENST00000427112 POU6F2P78424 691 aaPredicted RBP8.06□□□□□ -1.12
USP40-203ENST00000427112 CAMK2BQ13554 666 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 CRMP1Q14194 572 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 FGL2Q14314 439 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 SUZ12Q15022 739 aaKnown RBP8.06□□□□□ -1.12
USP40-203ENST00000427112 PRPF38BQ5VTL8 546 aaKnown RBP8.06□□□□□ -1.12
USP40-203ENST00000427112 YOD1Q5VVQ6 348 aaPredicted RBP8.06□□□□□ -1.12
USP40-203ENST00000427112 C12orf73Q69YU5 71 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 MZT2BQ6NZ67 158 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 BHLHB9Q6PI77 547 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 KIAA1324Q6UXG2 1013 aaKnown RBP8.06□□□□□ -1.12
USP40-203ENST00000427112 WDR88Q6ZMY6 472 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 GDF7Q7Z4P5 450 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 RDH10Q8IZV5 341 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 CRIPAKQ8N1N5 446 aa8.06□□□□□ -1.12
USP40-203ENST00000427112 KLHL36Q8N4N3 616 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 118.2 ms