RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 MASP1P48740 699 aa27.08■■□□□ 1.93
LIMCH1-211ENST00000509638 CLK3P49761 638 aaKnown RBP27.08■■□□□ 1.93
LIMCH1-211ENST00000509638 GAS1P54826 345 aa27.08■■□□□ 1.93
LIMCH1-211ENST00000509638 PRAMEF8Q5VWM4 474 aa27.08■■□□□ 1.93
LIMCH1-211ENST00000509638 PRAMEF7Q5VXH5 474 aa27.08■■□□□ 1.93
LIMCH1-211ENST00000509638 REEP3Q6NUK4 255 aa27.08■■□□□ 1.93
LIMCH1-211ENST00000509638 RPUSD3Q6P087 351 aaKnown RBP27.08■■□□□ 1.93
LIMCH1-211ENST00000509638 RINLQ6ZS11 566 aa27.08■■□□□ 1.93
LIMCH1-211ENST00000509638 DEFB107AQ8IZN7 70 aa27.08■■□□□ 1.93
LIMCH1-211ENST00000509638 METTL25Q8N6Q8 603 aa27.08■■□□□ 1.93
LIMCH1-211ENST00000509638 GATSQ8NAP1 163 aa27.08■■□□□ 1.93
LIMCH1-211ENST00000509638 HIPK4Q8NE63 616 aa27.08■■□□□ 1.93
LIMCH1-211ENST00000509638 JSRP1Q96MG2 331 aaPredicted RBP27.08■■□□□ 1.93
LIMCH1-211ENST00000509638 FRMD6Q96NE9 622 aa27.08■■□□□ 1.93
LIMCH1-211ENST00000509638 ADA2Q9NZK5 511 aa27.08■■□□□ 1.93
LIMCH1-211ENST00000509638 GMPR2Q9P2T1 348 aaKnown RBP27.08■■□□□ 1.93
LIMCH1-211ENST00000509638 ANGPT4Q9Y264 503 aa27.08■■□□□ 1.93
LIMCH1-211ENST00000509638 SEC23IPQ9Y6Y8 1000 aaKnown RBP27.08■■□□□ 1.93
LIMCH1-211ENST00000509638 TRIM3O75382 744 aaPredicted RBP27.07■■□□□ 1.92
LIMCH1-211ENST00000509638 RASAL1O95294 804 aa27.07■■□□□ 1.92
LIMCH1-211ENST00000509638 LIPEQ05469 1076 aa27.07■■□□□ 1.92
LIMCH1-211ENST00000509638 ZNF141Q15928 474 aa27.07■■□□□ 1.92
LIMCH1-211ENST00000509638 MAPK14Q16539 360 aa27.07■■□□□ 1.92
LIMCH1-211ENST00000509638 AP1ARQ63HQ0 302 aa27.07■■□□□ 1.92
LIMCH1-211ENST00000509638 PACS2Q86VP3 889 aa27.07■■□□□ 1.92
LIMCH1-211ENST00000509638 IFNEQ86WN2 208 aa27.07■■□□□ 1.92
LIMCH1-211ENST00000509638 OR2T12Q8NG77 320 aa27.07■■□□□ 1.92
LIMCH1-211ENST00000509638 BBS10Q8TAM1 723 aa27.07■■□□□ 1.92
LIMCH1-211ENST00000509638 NTNG2Q96CW9 530 aa27.07■■□□□ 1.92
LIMCH1-211ENST00000509638 ZG16BQ96DA0 208 aa27.07■■□□□ 1.92
LIMCH1-211ENST00000509638 ALG2Q9H553 416 aa27.07■■□□□ 1.92
LIMCH1-211ENST00000509638 TMEM181Q9P2C4 612 aa27.07■■□□□ 1.92
LIMCH1-211ENST00000509638 BOKQ9UMX3 212 aaPredicted RBP27.07■■□□□ 1.92
LIMCH1-211ENST00000509638 NCKAP5O14513 1909 aa27.07■■□□□ 1.92
LIMCH1-211ENST00000509638 A0A0G2JPF8 293 aa27.06■■□□□ 1.92
LIMCH1-211ENST00000509638 HNRNPCL2B2RXH8 293 aa27.06■■□□□ 1.92
LIMCH1-211ENST00000509638 HNRNPCL3B7ZW38 293 aa27.06■■□□□ 1.92
LIMCH1-211ENST00000509638 HNRNPCL1O60812 293 aaKnown RBP27.06■■□□□ 1.92
LIMCH1-211ENST00000509638 PGM3O95394 542 aa27.06■■□□□ 1.92
LIMCH1-211ENST00000509638 HNRNPCL4P0DMR1 293 aa27.06■■□□□ 1.92
LIMCH1-211ENST00000509638 AQP1P29972 269 aa27.06■■□□□ 1.92
LIMCH1-211ENST00000509638 FOXO1Q12778 655 aa27.06■■□□□ 1.92
LIMCH1-211ENST00000509638 INPP5JQ15735 1006 aaPredicted RBP27.06■■□□□ 1.92
LIMCH1-211ENST00000509638 CD226Q15762 336 aa27.06■■□□□ 1.92
LIMCH1-211ENST00000509638 VMACQ2NL98 169 aa27.06■■□□□ 1.92
LIMCH1-211ENST00000509638 KLHL26Q53HC5 615 aa27.06■■□□□ 1.92
LIMCH1-211ENST00000509638 TMEM41AQ96HV5 264 aa27.06■■□□□ 1.92
LIMCH1-211ENST00000509638 TAAR6Q96RI8 345 aa27.06■■□□□ 1.92
LIMCH1-211ENST00000509638 BCL2L10Q9HD36 194 aa27.06■■□□□ 1.92
LIMCH1-211ENST00000509638 DTNAQ9Y4J8 743 aa27.06■■□□□ 1.92
LIMCH1-211ENST00000509638 HRH3Q9Y5N1 445 aa27.06■■□□□ 1.92
LIMCH1-211ENST00000509638 A0A1W2PQD3 144 aa27.05■■□□□ 1.92
LIMCH1-211ENST00000509638 LRRC3CA6NJW4 275 aa27.05■■□□□ 1.92
LIMCH1-211ENST00000509638 ANGPTL1O95841 491 aa27.05■■□□□ 1.92
LIMCH1-211ENST00000509638 ZFP62Q8NB50 900 aaPredicted RBP27.05■■□□□ 1.92
LIMCH1-211ENST00000509638 MTHFD2LQ9H903 347 aaPredicted RBP27.05■■□□□ 1.92
LIMCH1-211ENST00000509638 ZKSCAN7Q9P0L1 754 aaPredicted RBP27.05■■□□□ 1.92
LIMCH1-211ENST00000509638 AGAP5A6NIR3 686 aa27.05■■□□□ 1.92
LIMCH1-211ENST00000509638 NDUFB5O43674 189 aa27.05■■□□□ 1.92
LIMCH1-211ENST00000509638 RPS4Y1P22090 263 aaKnown RBP27.05■■□□□ 1.92
LIMCH1-211ENST00000509638 GSK3BP49841 420 aa27.05■■□□□ 1.92
LIMCH1-211ENST00000509638 EEFSECP57772 596 aaKnown RBP27.05■■□□□ 1.92
LIMCH1-211ENST00000509638 FNDC7Q5VTL7 733 aa27.05■■□□□ 1.92
LIMCH1-211ENST00000509638 ERICH5Q6P6B1 374 aa27.05■■□□□ 1.92
LIMCH1-211ENST00000509638 TTTY12Q9BZ98 90 aa27.05■■□□□ 1.92
LIMCH1-211ENST00000509638 PPP4R1LQ9P1A2 415 aa27.05■■□□□ 1.92
LIMCH1-211ENST00000509638 SUCOQ9UBS9 1254 aaKnown RBP27.05■■□□□ 1.92
LIMCH1-211ENST00000509638 ANAPC2Q9UJX6 822 aa27.05■■□□□ 1.92
LIMCH1-211ENST00000509638 GNB5O14775 395 aa27.04■■□□□ 1.92
LIMCH1-211ENST00000509638 SNPHO15079 494 aa27.04■■□□□ 1.92
LIMCH1-211ENST00000509638 PLGLB1Q02325 96 aa27.04■■□□□ 1.92
LIMCH1-211ENST00000509638 BNIP1Q12981 228 aa27.04■■□□□ 1.92
LIMCH1-211ENST00000509638 OR5M10Q6IEU7 315 aa27.04■■□□□ 1.92
LIMCH1-211ENST00000509638 BNC2Q6ZN30 1099 aaPredicted RBP27.04■■□□□ 1.92
LIMCH1-211ENST00000509638 SLC30A8Q8IWU4 369 aa27.04■■□□□ 1.92
LIMCH1-211ENST00000509638 PEX5LQ8IYB4 626 aa27.04■■□□□ 1.92
LIMCH1-211ENST00000509638 RNF148Q8N7C7 305 aa27.04■■□□□ 1.92
LIMCH1-211ENST00000509638 OIT3Q8WWZ8 545 aa27.04■■□□□ 1.92
LIMCH1-211ENST00000509638 PMM1Q92871 262 aa27.04■■□□□ 1.92
LIMCH1-211ENST00000509638 ZFP64Q9NPA5 681 aa27.04■■□□□ 1.92
LIMCH1-211ENST00000509638 PACSIN3Q9UKS6 424 aa27.04■■□□□ 1.92
LIMCH1-211ENST00000509638 DNAJA2O60884 412 aa27.03■■□□□ 1.92
LIMCH1-211ENST00000509638 PCBP3P57721 371 aaKnown RBP27.03■■□□□ 1.92
LIMCH1-211ENST00000509638 PHOSPHO1Q8TCT1 267 aa27.03■■□□□ 1.92
LIMCH1-211ENST00000509638 WDR60Q8WVS4 1066 aa27.03■■□□□ 1.92
LIMCH1-211ENST00000509638 CDRT15Q96T59 188 aa27.03■■□□□ 1.92
LIMCH1-211ENST00000509638 KCTD14Q9BQ13 255 aaPredicted RBP27.03■■□□□ 1.92
LIMCH1-211ENST00000509638 CACYBPQ9HB71 228 aaKnown RBP27.03■■□□□ 1.92
LIMCH1-211ENST00000509638 TAS2R1Q9NYW7 299 aa27.03■■□□□ 1.92
LIMCH1-211ENST00000509638 PRORSD1PA6NEY8 169 aa27.02■■□□□ 1.92
LIMCH1-211ENST00000509638 SERINC4A6NH21 518 aa27.02■■□□□ 1.92
LIMCH1-211ENST00000509638 H3BNH8 94 aa27.02■■□□□ 1.92
LIMCH1-211ENST00000509638 DBIP07108 87 aaKnown RBP27.02■■□□□ 1.92
LIMCH1-211ENST00000509638 ZNF24P17028 368 aa27.02■■□□□ 1.92
LIMCH1-211ENST00000509638 ELAVL4P26378 380 aaKnown RBP27.02■■□□□ 1.92
LIMCH1-211ENST00000509638 PRR30Q53SZ7 412 aaPredicted RBP27.02■■□□□ 1.92
LIMCH1-211ENST00000509638 TIGD3Q6B0B8 471 aa27.02■■□□□ 1.92
LIMCH1-211ENST00000509638 FAM180AQ6UWF9 173 aa27.02■■□□□ 1.92
LIMCH1-211ENST00000509638 KRT73Q86Y46 540 aa27.02■■□□□ 1.92
LIMCH1-211ENST00000509638 MICU2Q8IYU8 434 aa27.02■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms