RNA–Protein interactions for RNA: ENST00000642021.1

PHGDH-233, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 2,794 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-233ENST00000642021 CHMP4AQ9BY43 222 aa16.55■□□□□ 0.24
PHGDH-233ENST00000642021 VPS37CA5D8V6 355 aaPredicted RBP16.55■□□□□ 0.24
PHGDH-233ENST00000642021 AP5Z1O43299 807 aa16.55■□□□□ 0.24
PHGDH-233ENST00000642021 KLHDC4Q8TBB5 520 aa16.55■□□□□ 0.24
PHGDH-233ENST00000642021 MAP4K1Q92918 833 aa16.55■□□□□ 0.24
PHGDH-233ENST00000642021 ATP6V1DQ9Y5K8 247 aa16.55■□□□□ 0.24
PHGDH-233ENST00000642021 KIAA2012Q0VF49 1180 aa16.54■□□□□ 0.24
PHGDH-233ENST00000642021 FAM173BQ6P4H8 233 aa16.54■□□□□ 0.24
PHGDH-233ENST00000642021 C17orf53Q8N3J3 647 aaPredicted RBP16.54■□□□□ 0.24
PHGDH-233ENST00000642021 ZSCAN31Q96LW9 406 aaPredicted RBP16.54■□□□□ 0.24
PHGDH-233ENST00000642021 HEG1Q9ULI3 1381 aa16.54■□□□□ 0.24
PHGDH-233ENST00000642021 GRM8O00222 908 aa16.54■□□□□ 0.24
PHGDH-233ENST00000642021 C1orf141Q5JVX7 400 aa16.54■□□□□ 0.24
PHGDH-233ENST00000642021 ERC1Q8IUD2 1116 aa16.54■□□□□ 0.24
PHGDH-233ENST00000642021 GPATCH3Q96I76 525 aa16.54■□□□□ 0.24
PHGDH-233ENST00000642021 SIL1Q9H173 461 aa16.54■□□□□ 0.24
PHGDH-233ENST00000642021 BOLA2Q9H3K6 86 aa16.54■□□□□ 0.24
PHGDH-233ENST00000642021 SH2B1Q9NRF2 756 aaPredicted RBP16.54■□□□□ 0.24
PHGDH-233ENST00000642021 RGPD2P0DJD1 1756 aa16.53■□□□□ 0.24
PHGDH-233ENST00000642021 A0A0D9SFI3 127 aa16.53■□□□□ 0.24
PHGDH-233ENST00000642021 LETM1O95202 739 aaPredicted RBP16.53■□□□□ 0.24
PHGDH-233ENST00000642021 KCNH5Q8NCM2 988 aa16.53■□□□□ 0.24
PHGDH-233ENST00000642021 KDM4AO75164 1064 aa16.53■□□□□ 0.24
PHGDH-233ENST00000642021 GCP02774 474 aa16.53■□□□□ 0.24
PHGDH-233ENST00000642021 ZKSCAN1P17029 563 aaPredicted RBP16.53■□□□□ 0.24
PHGDH-233ENST00000642021 AMOTQ4VCS5 1084 aa16.53■□□□□ 0.24
PHGDH-233ENST00000642021 TAF7LQ5H9L4 462 aa16.53■□□□□ 0.24
PHGDH-233ENST00000642021 FERMT3Q86UX7 667 aa16.53■□□□□ 0.24
PHGDH-233ENST00000642021 LINS1Q8NG48 757 aa16.53■□□□□ 0.24
PHGDH-233ENST00000642021 SLC27A2O14975 620 aa16.52■□□□□ 0.24
PHGDH-233ENST00000642021 KCNJ4P48050 445 aa16.52■□□□□ 0.24
PHGDH-233ENST00000642021 PDIA6Q15084 440 aa16.52■□□□□ 0.24
PHGDH-233ENST00000642021 AXIN2Q9Y2T1 843 aa16.52■□□□□ 0.24
PHGDH-233ENST00000642021 IGKV5-2P06315 115 aa16.52■□□□□ 0.23
PHGDH-233ENST00000642021 SASS6Q6UVJ0 657 aa16.52■□□□□ 0.23
PHGDH-233ENST00000642021 ARHGEF25Q86VW2 580 aa16.52■□□□□ 0.23
PHGDH-233ENST00000642021 PLCB2Q00722 1185 aa16.51■□□□□ 0.23
PHGDH-233ENST00000642021 G3BP1Q13283 466 aaKnown RBP eCLIP16.51■□□□□ 0.239e-7■■■□□ 18.4
PHGDH-233ENST00000642021 CDC37L1Q7L3B6 337 aa16.51■□□□□ 0.23
PHGDH-233ENST00000642021 JARID2Q92833 1246 aaPredicted RBP16.51■□□□□ 0.23
PHGDH-233ENST00000642021 LARP1BQ659C4 914 aaKnown RBP16.51■□□□□ 0.23
PHGDH-233ENST00000642021 TTC6Q86TZ1 520 aa16.51■□□□□ 0.23
PHGDH-233ENST00000642021 EDC3Q96F86 508 aaKnown RBP16.51■□□□□ 0.23
PHGDH-233ENST00000642021 ANKRD24Q8TF21 1146 aa16.5■□□□□ 0.23
PHGDH-233ENST00000642021 ORAI2Q96SN7 254 aa16.5■□□□□ 0.23
PHGDH-233ENST00000642021 CHMP3Q9Y3E7 222 aa16.5■□□□□ 0.23
PHGDH-233ENST00000642021 UTYO14607 1347 aa16.5■□□□□ 0.23
PHGDH-233ENST00000642021 SLC39A6Q13433 755 aa16.5■□□□□ 0.23
PHGDH-233ENST00000642021 NOLC1Q14978 699 aaKnown RBP eCLIP16.5■□□□□ 0.23
PHGDH-233ENST00000642021 EPHA10Q5JZY3 1008 aa16.5■□□□□ 0.23
PHGDH-233ENST00000642021 ZNF589Q86UQ0 364 aaPredicted RBP16.5■□□□□ 0.23
PHGDH-233ENST00000642021 PIBF1Q8WXW3 757 aa16.5■□□□□ 0.23
PHGDH-233ENST00000642021 DDX21Q9NR30 783 aaKnown RBP eCLIP16.49■□□□□ 0.23
PHGDH-233ENST00000642021 LMOD2Q6P5Q4 547 aa16.49■□□□□ 0.23
PHGDH-233ENST00000642021 FSD1Q9BTV5 496 aa16.49■□□□□ 0.23
PHGDH-233ENST00000642021 SNRKQ9NRH2 765 aa16.49■□□□□ 0.23
PHGDH-233ENST00000642021 LMO7Q8WWI1 1683 aa16.49■□□□□ 0.23
PHGDH-233ENST00000642021 NPHP4O75161 1426 aaPredicted RBP16.48■□□□□ 0.23
PHGDH-233ENST00000642021 CHGBP05060 677 aa16.48■□□□□ 0.23
PHGDH-233ENST00000642021 LIG1P18858 919 aa16.48■□□□□ 0.23
PHGDH-233ENST00000642021 DYNC1I1O14576 645 aa16.48■□□□□ 0.23
PHGDH-233ENST00000642021 MYL6BP14649 208 aa16.48■□□□□ 0.23
PHGDH-233ENST00000642021 TOB2Q14106 344 aaPredicted RBP16.48■□□□□ 0.23
PHGDH-233ENST00000642021 DNTTIP2Q5QJE6 756 aaKnown RBP16.48■□□□□ 0.23
PHGDH-233ENST00000642021 CAMK4Q16566 473 aa16.47■□□□□ 0.23
PHGDH-233ENST00000642021 RIC3Q7Z5B4 369 aa16.47■□□□□ 0.23
PHGDH-233ENST00000642021 HDAC5Q9UQL6 1122 aa16.47■□□□□ 0.23
PHGDH-233ENST00000642021 NDUFB9Q9Y6M9 179 aa16.47■□□□□ 0.23
PHGDH-233ENST00000642021 STK3Q13188 491 aa16.47■□□□□ 0.23
PHGDH-233ENST00000642021 BLOC1S2Q6QNY1 142 aa16.47■□□□□ 0.23
PHGDH-233ENST00000642021 TSC1Q92574 1164 aa16.47■□□□□ 0.23
PHGDH-233ENST00000642021 ADGRL3Q9HAR2 1447 aa16.46■□□□□ 0.23
PHGDH-233ENST00000642021 HIP1O00291 1037 aa16.46■□□□□ 0.23
PHGDH-233ENST00000642021 RPS6KB1P23443 525 aa16.46■□□□□ 0.23
PHGDH-233ENST00000642021 PSMA5P28066 241 aa16.46■□□□□ 0.23
PHGDH-233ENST00000642021 LARP1Q6PKG0 1096 aaKnown RBP16.46■□□□□ 0.23
PHGDH-233ENST00000642021 TFIP11Q9UBB9 837 aaKnown RBP16.46■□□□□ 0.23
PHGDH-233ENST00000642021 DDX58O95786 925 aaKnown RBP16.46■□□□□ 0.23
PHGDH-233ENST00000642021 MED23Q9ULK4 1368 aa16.45■□□□□ 0.22
PHGDH-233ENST00000642021 NEURL1BA8MQ27 555 aa16.45■□□□□ 0.22
PHGDH-233ENST00000642021 KRT85P78386 507 aa16.45■□□□□ 0.22
PHGDH-233ENST00000642021 KCNF1Q9H3M0 494 aa16.45■□□□□ 0.22
PHGDH-233ENST00000642021 COL15A1P39059 1388 aa16.45■□□□□ 0.22
PHGDH-233ENST00000642021 PIP4K2AP48426 406 aaPredicted RBP16.45■□□□□ 0.22
PHGDH-233ENST00000642021 NCAPD2Q15021 1401 aa16.45■□□□□ 0.22
PHGDH-233ENST00000642021 TAF5LO75529 589 aa16.44■□□□□ 0.22
PHGDH-233ENST00000642021 GCKRQ14397 625 aa16.44■□□□□ 0.22
PHGDH-233ENST00000642021 ZNF790Q6PG37 636 aa16.44■□□□□ 0.22
PHGDH-233ENST00000642021 COPS6Q7L5N1 327 aa16.44■□□□□ 0.22
PHGDH-233ENST00000642021 SPC24Q8NBT2 197 aa16.44■□□□□ 0.22
PHGDH-233ENST00000642021 XAGE3Q8WTP9 111 aa16.44■□□□□ 0.22
PHGDH-233ENST00000642021 MYD88Q99836 296 aa16.44■□□□□ 0.22
PHGDH-233ENST00000642021 ARID3AQ99856 593 aa16.44■□□□□ 0.22
PHGDH-233ENST00000642021 CCDC192P0DO97 292 aa16.43■□□□□ 0.22
PHGDH-233ENST00000642021 CKAP2LQ8IYA6 745 aa16.43■□□□□ 0.22
PHGDH-233ENST00000642021 MYRIPQ8NFW9 859 aa16.43■□□□□ 0.22
PHGDH-233ENST00000642021 PYCARDQ9ULZ3 195 aa16.43■□□□□ 0.22
PHGDH-233ENST00000642021 RNF20Q5VTR2 975 aa16.43■□□□□ 0.22
PHGDH-233ENST00000642021 SPTLC3Q9NUV7 552 aa16.43■□□□□ 0.22
PHGDH-233ENST00000642021 DBNLQ9UJU6 430 aaKnown RBP16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms