RNA–Protein interactions for RNA: ENST00000640554.1

SDHD-209, Transcript of succinate dehydrogenase complex subunit D, human

TSL 5

Gene SDHD, Length 727 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SDHD-209	ENST00000640554	SPINK5	Q9NQ38	1064 aa	Predicted RBP	18.29	■□□□□ 0.52
SDHD-209	ENST00000640554	TRMT112	Q9UI30	125 aa	Known RBP	18.29	■□□□□ 0.52
SDHD-209	ENST00000640554	N4BP2	Q86UW6	1770 aa	Predicted RBP	18.28	■□□□□ 0.52
SDHD-209	ENST00000640554	HOXA10	P31260	410 aa	Predicted RBP	18.28	■□□□□ 0.52
SDHD-209	ENST00000640554	KSR2	Q6VAB6	950 aa		18.28	■□□□□ 0.52
SDHD-209	ENST00000640554	SH3TC1	Q8TE82	1336 aa		18.27	■□□□□ 0.52
SDHD-209	ENST00000640554	RPGR	Q92834	1020 aa	Known RBP	18.27	■□□□□ 0.52
SDHD-209	ENST00000640554	NEXN	Q0ZGT2	675 aa		18.26	■□□□□ 0.51
SDHD-209	ENST00000640554	PRPF40B	Q6NWY9	871 aa	Known RBP	18.26	■□□□□ 0.51
SDHD-209	ENST00000640554	CCDC191	Q8NCU4	936 aa		18.26	■□□□□ 0.51
SDHD-209	ENST00000640554	ZNF428	Q96B54	188 aa		18.26	■□□□□ 0.51
SDHD-209	ENST00000640554	METTL22	Q9BUU2	404 aa	Predicted RBP	18.26	■□□□□ 0.51
SDHD-209	ENST00000640554	NUP98	P52948	1817 aa		18.26	■□□□□ 0.51
SDHD-209	ENST00000640554	SLFN5	Q08AF3	891 aa		18.25	■□□□□ 0.51
SDHD-209	ENST00000640554	GRIPAP1	Q4V328	841 aa		18.25	■□□□□ 0.51
SDHD-209	ENST00000640554	CC2D2B	Q6DHV5	1058 aa		18.25	■□□□□ 0.51
SDHD-209	ENST00000640554	ZNF784	Q8NCA9	323 aa	Predicted RBP	18.25	■□□□□ 0.51
SDHD-209	ENST00000640554	RBM17	Q96I25	401 aa	Known RBP	18.25	■□□□□ 0.51
SDHD-209	ENST00000640554	CRAMP1	Q96RY5	1269 aa		18.25	■□□□□ 0.51
SDHD-209	ENST00000640554	CHD4	Q14839	1912 aa		18.24	■□□□□ 0.51
SDHD-209	ENST00000640554	PI4KAP2	A4QPH2	592 aa		18.24	■□□□□ 0.51
SDHD-209	ENST00000640554	ATP5J2-PTCD1	G3V325	749 aa		18.24	■□□□□ 0.51
SDHD-209	ENST00000640554	PI4KAP1	Q8N8J0	262 aa		18.24	■□□□□ 0.51
SDHD-209	ENST00000640554	MAP3K2	Q9Y2U5	619 aa		18.24	■□□□□ 0.51
SDHD-209	ENST00000640554	ABCC12	Q96J65	1359 aa		18.24	■□□□□ 0.51
SDHD-209	ENST00000640554	GOLGB1	Q14789	3259 aa	Known RBP	18.24	■□□□□ 0.51
SDHD-209	ENST00000640554	UTRN	P46939	3433 aa		18.23	■□□□□ 0.51
SDHD-209	ENST00000640554	BRCA1	P38398	1863 aa	Known RBP	18.23	■□□□□ 0.51
SDHD-209	ENST00000640554	C21orf2	O43822	256 aa		18.23	■□□□□ 0.51
SDHD-209	ENST00000640554	FLII	Q13045	1269 aa		18.23	■□□□□ 0.51
SDHD-209	ENST00000640554	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	18.23	■□□□□ 0.51
SDHD-209	ENST00000640554	C7orf43	Q8WVR3	580 aa		18.23	■□□□□ 0.51
SDHD-209	ENST00000640554	MYD88	Q99836	296 aa		18.23	■□□□□ 0.51
SDHD-209	ENST00000640554	LTBP3	Q9NS15	1303 aa		18.23	■□□□□ 0.51
SDHD-209	ENST00000640554	TCERG1	O14776	1098 aa	Known RBP	18.22	■□□□□ 0.51
SDHD-209	ENST00000640554	CT47B1	P0C2W7	299 aa	Predicted RBP	18.22	■□□□□ 0.51
SDHD-209	ENST00000640554	LMNB1	P20700	586 aa		18.22	■□□□□ 0.51
SDHD-209	ENST00000640554	C9orf131	Q5VYM1	1079 aa		18.22	■□□□□ 0.51
SDHD-209	ENST00000640554	TRMT2A	Q8IZ69	625 aa	Known RBP	18.22	■□□□□ 0.51
SDHD-209	ENST00000640554	RTKN2	Q8IZC4	609 aa		18.22	■□□□□ 0.51
SDHD-209	ENST00000640554	CWC25	Q9NXE8	425 aa	Predicted RBP	18.22	■□□□□ 0.51
SDHD-209	ENST00000640554	ANKRD31	Q8N7Z5	1873 aa		18.22	■□□□□ 0.51
SDHD-209	ENST00000640554	ZC3H4	Q9UPT8	1303 aa	Known RBP	18.22	■□□□□ 0.51
SDHD-209	ENST00000640554	ARFGEF1	Q9Y6D6	1849 aa		18.21	■□□□□ 0.51
SDHD-209	ENST00000640554	BBOX1	O75936	387 aa		18.21	■□□□□ 0.51
SDHD-209	ENST00000640554	FKBP5	Q13451	457 aa	Predicted RBP	18.21	■□□□□ 0.51
SDHD-209	ENST00000640554	CCDC93	Q567U6	631 aa		18.21	■□□□□ 0.51
SDHD-209	ENST00000640554	TMX4	Q9H1E5	349 aa	Predicted RBP	18.21	■□□□□ 0.51
SDHD-209	ENST00000640554	ADCY9	O60503	1353 aa		18.2	■□□□□ 0.5
SDHD-209	ENST00000640554	DLEC1	Q9Y238	1755 aa		18.2	■□□□□ 0.5
SDHD-209	ENST00000640554	PCCA	P05165	728 aa	Predicted RBP	18.2	■□□□□ 0.5
SDHD-209	ENST00000640554	HCLS1	P14317	486 aa	Predicted RBP	18.2	■□□□□ 0.5
SDHD-209	ENST00000640554	SF3B3	Q15393	1217 aa	Known RBP	18.2	■□□□□ 0.5
SDHD-209	ENST00000640554	G2E3	Q7L622	706 aa		18.2	■□□□□ 0.5
SDHD-209	ENST00000640554	FAM89A	Q96GI7	184 aa		18.2	■□□□□ 0.5
SDHD-209	ENST00000640554	DDX46	Q7L014	1031 aa	Known RBP	18.19	■□□□□ 0.5
SDHD-209	ENST00000640554	TMC4	Q7Z404	712 aa		18.19	■□□□□ 0.5
SDHD-209	ENST00000640554	DNAAF4	Q8WXU2	420 aa		18.19	■□□□□ 0.5
SDHD-209	ENST00000640554	TAOK3	Q9H2K8	898 aa		18.19	■□□□□ 0.5
SDHD-209	ENST00000640554	RNF181	Q9P0P0	153 aa		18.19	■□□□□ 0.5
SDHD-209	ENST00000640554	NFKBIE	O00221	500 aa		18.18	■□□□□ 0.5
SDHD-209	ENST00000640554	IRS4	O14654	1257 aa	Predicted RBP	18.18	■□□□□ 0.5
SDHD-209	ENST00000640554	ZNF219	Q9P2Y4	722 aa	Predicted RBP	18.18	■□□□□ 0.5
SDHD-209	ENST00000640554	IGKV5-2	P06315	115 aa		18.17	■□□□□ 0.5
SDHD-209	ENST00000640554	SYNE4	Q8N205	404 aa		18.17	■□□□□ 0.5
SDHD-209	ENST00000640554	LINS1	Q8NG48	757 aa		18.17	■□□□□ 0.5
SDHD-209	ENST00000640554	FKBP4	Q02790	459 aa	Known RBP eCLIP	18.16	■□□□□ 0.5
SDHD-209	ENST00000640554	ALDH1L2	Q3SY69	923 aa		18.16	■□□□□ 0.5
SDHD-209	ENST00000640554	C3orf67	Q6ZVT6	689 aa		18.16	■□□□□ 0.5
SDHD-209	ENST00000640554	CDCA7L	Q96GN5	454 aa		18.16	■□□□□ 0.5
SDHD-209	ENST00000640554	GPBP1L1	Q9HC44	474 aa	Predicted RBP	18.16	■□□□□ 0.5
SDHD-209	ENST00000640554	CDHR2	Q9BYE9	1310 aa		18.16	■□□□□ 0.5
SDHD-209	ENST00000640554	NEURL1B	A8MQ27	555 aa		18.15	■□□□□ 0.5
SDHD-209	ENST00000640554	PPEF1	O14829	653 aa	Predicted RBP	18.15	■□□□□ 0.5
SDHD-209	ENST00000640554	PDE8A	O60658	829 aa		18.15	■□□□□ 0.5
SDHD-209	ENST00000640554	RASSF7	Q02833	373 aa		18.15	■□□□□ 0.5
SDHD-209	ENST00000640554	GRAP	Q13588	217 aa		18.15	■□□□□ 0.5
SDHD-209	ENST00000640554	GRAPL	Q8TC17	118 aa	Predicted RBP	18.15	■□□□□ 0.5
SDHD-209	ENST00000640554	PSMD1	Q99460	953 aa		18.15	■□□□□ 0.5
SDHD-209	ENST00000640554	ATP6V0A2	Q9Y487	856 aa		18.15	■□□□□ 0.5
SDHD-209	ENST00000640554	ANKRD36C	Q5JPF3	1778 aa		18.14	■□□□□ 0.5
SDHD-209	ENST00000640554	SP8	Q8IXZ3	490 aa		18.14	■□□□□ 0.49
SDHD-209	ENST00000640554	VPS33B	Q9H267	617 aa		18.14	■□□□□ 0.49
SDHD-209	ENST00000640554	COL11A2	P13942	1736 aa	Predicted RBP	18.14	■□□□□ 0.49
SDHD-209	ENST00000640554		H7C1W4	665 aa		18.13	■□□□□ 0.49
SDHD-209	ENST00000640554	GCKR	Q14397	625 aa		18.13	■□□□□ 0.49
SDHD-209	ENST00000640554	CCDC152	Q4G0S7	254 aa		18.13	■□□□□ 0.49
SDHD-209	ENST00000640554	RTL5	Q5HYW3	569 aa	Predicted RBP	18.13	■□□□□ 0.49
SDHD-209	ENST00000640554	ABCC4	O15439	1325 aa		18.13	■□□□□ 0.49
SDHD-209	ENST00000640554	PTPRC	P08575	1304 aa		18.13	■□□□□ 0.49
SDHD-209	ENST00000640554	KDM2B	Q8NHM5	1336 aa		18.13	■□□□□ 0.49
SDHD-209	ENST00000640554	HNRNPU	Q00839	825 aa	Known RBP eCLIP	18.12	■□□□□ 0.49
SDHD-209	ENST00000640554	DPY19L2	Q6NUT2	758 aa		18.12	■□□□□ 0.49
SDHD-209	ENST00000640554	MRPL50	Q8N5N7	158 aa	Known RBP	18.12	■□□□□ 0.49
SDHD-209	ENST00000640554	SUPT20H	Q8NEM7	779 aa		18.12	■□□□□ 0.49
SDHD-209	ENST00000640554	CWF19L2	Q2TBE0	894 aa	Known RBP	18.11	■□□□□ 0.49
SDHD-209	ENST00000640554	BEND3	Q5T5X7	828 aa		18.11	■□□□□ 0.49
SDHD-209	ENST00000640554	SSH1	Q8WYL5	1049 aa		18.11	■□□□□ 0.49
SDHD-209	ENST00000640554	ARFGEF2	Q9Y6D5	1785 aa		18.11	■□□□□ 0.49
SDHD-209	ENST00000640554	SLX4	Q8IY92	1834 aa		18.11	■□□□□ 0.49

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