RNA–Protein interactions for RNA: ENST00000640499.1

VEGFA-231, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VEGFA, Length 1,188 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-231ENST00000640499 HNRNPUQ00839 825 aaKnown RBP eCLIP34.27■■■■□ 3.088e-7■□□□□ 10.9
VEGFA-231ENST00000640499 PPP1R42Q7Z4L9 355 aa34.27■■■■□ 3.08
VEGFA-231ENST00000640499 UTP14AQ9BVJ6 771 aaKnown RBP34.27■■■■□ 3.08
VEGFA-231ENST00000640499 PI4KAP2A4QPH2 592 aa34.26■■■■□ 3.08
VEGFA-231ENST00000640499 TRIM28Q13263 835 aaKnown RBP34.26■■■■□ 3.08
VEGFA-231ENST00000640499 KSR2Q6VAB6 950 aa34.26■■■■□ 3.08
VEGFA-231ENST00000640499 PI4KAP1Q8N8J0 262 aa34.26■■■■□ 3.08
VEGFA-231ENST00000640499 GTF2E1P29083 439 aaPredicted RBP34.25■■■■□ 3.07
VEGFA-231ENST00000640499 FLIIQ13045 1269 aa34.25■■■■□ 3.07
VEGFA-231ENST00000640499 DALRD3Q5D0E6 543 aaKnown RBP34.25■■■■□ 3.07
VEGFA-231ENST00000640499 METTL22Q9BUU2 404 aaPredicted RBP34.25■■■■□ 3.07
VEGFA-231ENST00000640499 PDZRN3Q9UPQ7 1066 aa34.25■■■■□ 3.07
VEGFA-231ENST00000640499 MAP3K2Q9Y2U5 619 aa34.25■■■■□ 3.07
VEGFA-231ENST00000640499 ARFGEF1Q9Y6D6 1849 aa34.25■■■■□ 3.07
VEGFA-231ENST00000640499 SLC10A5Q5PT55 438 aa34.24■■■■□ 3.07
VEGFA-231ENST00000640499 C3orf67Q6ZVT6 689 aa34.24■■■■□ 3.07
VEGFA-231ENST00000640499 MYD88Q99836 296 aa34.23■■■■□ 3.07
VEGFA-231ENST00000640499 RIC1Q4ADV7 1423 aa34.22■■■■□ 3.07
VEGFA-231ENST00000640499 DDX58O95786 925 aaKnown RBP34.22■■■■□ 3.07
VEGFA-231ENST00000640499 ZNF622Q969S3 477 aaKnown RBP eCLIP34.22■■■■□ 3.073e-13■□□□□ 10.7
VEGFA-231ENST00000640499 CRY2Q49AN0 593 aa34.21■■■■□ 3.07
VEGFA-231ENST00000640499 STYK1Q6J9G0 422 aa34.21■■■■□ 3.07
VEGFA-231ENST00000640499 TTLL6Q8N841 843 aa34.21■■■■□ 3.07
VEGFA-231ENST00000640499 MASTLQ96GX5 879 aa34.2■■■■□ 3.07
VEGFA-231ENST00000640499 TRMT112Q9UI30 125 aaKnown RBP34.2■■■■□ 3.07
VEGFA-231ENST00000640499 IGKV5-2P06315 115 aa34.19■■■■□ 3.06
VEGFA-231ENST00000640499 CHD4Q14839 1912 aa34.19■■■■□ 3.06
VEGFA-231ENST00000640499 RNF123Q5XPI4 1314 aa34.18■■■■□ 3.06
VEGFA-231ENST00000640499 SLX4Q8IY92 1834 aa34.18■■■■□ 3.06
VEGFA-231ENST00000640499 MRPL50Q8N5N7 158 aaKnown RBP34.17■■■■□ 3.06
VEGFA-231ENST00000640499 FAM89AQ96GI7 184 aa34.17■■■■□ 3.06
VEGFA-231ENST00000640499 SH3TC1Q8TE82 1336 aa34.16■■■■□ 3.06
VEGFA-231ENST00000640499 HCLS1P14317 486 aaPredicted RBP34.16■■■■□ 3.06
VEGFA-231ENST00000640499 NPR1P16066 1061 aa34.16■■■■□ 3.06
VEGFA-231ENST00000640499 FKBP5Q13451 457 aaPredicted RBP34.16■■■■□ 3.06
VEGFA-231ENST00000640499 SSH1Q8WYL5 1049 aa34.16■■■■□ 3.06
VEGFA-231ENST00000640499 DDX60Q8IY21 1712 aaKnown RBP34.14■■■■□ 3.06
VEGFA-231ENST00000640499 CCDC191Q8NCU4 936 aa34.14■■■■□ 3.06
VEGFA-231ENST00000640499 CNKSR1Q969H4 720 aa34.14■■■■□ 3.06
VEGFA-231ENST00000640499 CACNA1SQ13698 1873 aa34.14■■■■□ 3.06
VEGFA-231ENST00000640499 LAMB2P55268 1798 aa34.13■■■■□ 3.05
VEGFA-231ENST00000640499 F6X3S4 739 aa34.12■■■■□ 3.05
VEGFA-231ENST00000640499 HOXA10P31260 410 aaPredicted RBP34.12■■■■□ 3.05
VEGFA-231ENST00000640499 CWF19L2Q2TBE0 894 aaKnown RBP34.12■■■■□ 3.05
VEGFA-231ENST00000640499 RTL5Q5HYW3 569 aaPredicted RBP34.12■■■■□ 3.05
VEGFA-231ENST00000640499 PRPF40BQ6NWY9 871 aaKnown RBP34.12■■■■□ 3.05
VEGFA-231ENST00000640499 ARHGAP27Q6ZUM4 889 aa34.12■■■■□ 3.05
VEGFA-231ENST00000640499 C7orf43Q8WVR3 580 aa34.11■■■■□ 3.05
VEGFA-231ENST00000640499 DNAAF4Q8WXU2 420 aa34.11■■■■□ 3.05
VEGFA-231ENST00000640499 JARID2Q92833 1246 aaPredicted RBP34.11■■■■□ 3.05
VEGFA-231ENST00000640499 NLRP3Q96P20 1036 aa34.11■■■■□ 3.05
VEGFA-231ENST00000640499 ZBED9Q6R2W3 1325 aa34.1■■■■□ 3.05
VEGFA-231ENST00000640499 NEURL1BA8MQ27 555 aa34.1■■■■□ 3.05
VEGFA-231ENST00000640499 ZBTB38Q8NAP3 1195 aaPredicted RBP34.1■■■■□ 3.05
VEGFA-231ENST00000640499 CWC25Q9NXE8 425 aaPredicted RBP34.1■■■■□ 3.05
VEGFA-231ENST00000640499 BCL2L13Q9BXK5 485 aa34.09■■■■□ 3.05
VEGFA-231ENST00000640499 C21orf2O43822 256 aa34.08■■■■□ 3.05
VEGFA-231ENST00000640499 YY1P25490 414 aa34.08■■■■□ 3.05
VEGFA-231ENST00000640499 ZNF219Q9P2Y4 722 aaPredicted RBP34.08■■■■□ 3.05
VEGFA-231ENST00000640499 PCCAP05165 728 aaPredicted RBP34.07■■■■□ 3.04
VEGFA-231ENST00000640499 CT47B1P0C2W7 299 aaPredicted RBP34.06■■■■□ 3.04
VEGFA-231ENST00000640499 ALDH1L2Q3SY69 923 aa34.06■■■■□ 3.04
VEGFA-231ENST00000640499 IRS4O14654 1257 aaPredicted RBP34.05■■■■□ 3.04
VEGFA-231ENST00000640499 PRELPP51888 382 aa34.05■■■■□ 3.04
VEGFA-231ENST00000640499 NEXNQ0ZGT2 675 aa34.05■■■■□ 3.04
VEGFA-231ENST00000640499 SLC51AQ86UW1 340 aa34.05■■■■□ 3.04
VEGFA-231ENST00000640499 BEND3Q5T5X7 828 aa34.04■■■■□ 3.04
VEGFA-231ENST00000640499 OLFM4Q6UX06 510 aa34.04■■■■□ 3.04
VEGFA-231ENST00000640499 RPGRQ92834 1020 aaKnown RBP34.04■■■■□ 3.04
VEGFA-231ENST00000640499 CRAMP1Q96RY5 1269 aa34.04■■■■□ 3.04
VEGFA-231ENST00000640499 NFKBIEO00221 500 aa34.03■■■■□ 3.04
VEGFA-231ENST00000640499 ALDH1B1P30837 517 aa34.03■■■■□ 3.04
VEGFA-231ENST00000640499 LINS1Q8NG48 757 aa34.03■■■■□ 3.04
VEGFA-231ENST00000640499 H7C1W4 665 aa34.02■■■■□ 3.04
VEGFA-231ENST00000640499 GCKRQ14397 625 aa34.02■■■■□ 3.04
VEGFA-231ENST00000640499 SF3B3Q15393 1217 aaKnown RBP34.02■■■■□ 3.04
VEGFA-231ENST00000640499 SBF1O95248 1867 aa34.01■■■■□ 3.04
VEGFA-231ENST00000640499 TAF1P21675 1872 aa34.01■■■■□ 3.04
VEGFA-231ENST00000640499 FER1L6Q2WGJ9 1857 aa34.01■■■■□ 3.04
VEGFA-231ENST00000640499 RARSP54136 660 aaKnown RBP34.01■■■■□ 3.03
VEGFA-231ENST00000640499 RASSF7Q02833 373 aa34.01■■■■□ 3.03
VEGFA-231ENST00000640499 RBM17Q96I25 401 aaKnown RBP34.01■■■■□ 3.03
VEGFA-231ENST00000640499 COL4A1P02462 1669 aa34■■■■□ 3.03
VEGFA-231ENST00000640499 CASP7P55210 303 aa34■■■■□ 3.03
VEGFA-231ENST00000640499 SMC4Q9NTJ3 1288 aa34■■■■□ 3.03
VEGFA-231ENST00000640499 ABCC4O15439 1325 aa34■■■■□ 3.03
VEGFA-231ENST00000640499 CDHR2Q9BYE9 1310 aa33.99■■■■□ 3.03
VEGFA-231ENST00000640499 SNED1Q8TER0 1413 aa33.98■■■■□ 3.03
VEGFA-231ENST00000640499 BRPF1P55201 1214 aaPredicted RBP33.98■■■■□ 3.03
VEGFA-231ENST00000640499 PTPRCP08575 1304 aa33.97■■■■□ 3.03
VEGFA-231ENST00000640499 UBE3BQ7Z3V4 1068 aa33.95■■■■□ 3.03
VEGFA-231ENST00000640499 PDE8AO60658 829 aa33.94■■■■□ 3.02
VEGFA-231ENST00000640499 C9orf131Q5VYM1 1079 aa33.94■■■■□ 3.02
VEGFA-231ENST00000640499 SLC4A10Q6U841 1118 aa33.94■■■■□ 3.02
VEGFA-231ENST00000640499 NOB1Q9ULX3 412 aaKnown RBP33.93■■■■□ 3.02
VEGFA-231ENST00000640499 DDX46Q7L014 1031 aaKnown RBP33.92■■■■□ 3.02
VEGFA-231ENST00000640499 CCDC88AQ3V6T2 1871 aa33.92■■■■□ 3.02
VEGFA-231ENST00000640499 PPEF1O14829 653 aaPredicted RBP33.91■■■■□ 3.02
VEGFA-231ENST00000640499 GRAPQ13588 217 aa33.91■■■■□ 3.02
VEGFA-231ENST00000640499 CCDC93Q567U6 631 aa33.91■■■■□ 3.02
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms