RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 FMR1NBQ8N0W7 255 aaPredicted RBP4.39□□□□□ -1.71
VIM-210ENST00000637053 IREB2P48200 963 aaKnown RBP4.38□□□□□ -1.71
VIM-210ENST00000637053 AFF1P51825 1210 aaKnown RBP4.38□□□□□ -1.71
VIM-210ENST00000637053 TMCO4Q5TGY1 634 aa4.38□□□□□ -1.71
VIM-210ENST00000637053 TICAM2Q86XR7 235 aa4.38□□□□□ -1.71
VIM-210ENST00000637053 DMRTC2Q8IXT2 367 aaPredicted RBP4.38□□□□□ -1.71
VIM-210ENST00000637053 FAM177A1Q8N128 213 aaPredicted RBP4.38□□□□□ -1.71
VIM-210ENST00000637053 MTMR14Q8NCE2 650 aa4.38□□□□□ -1.71
VIM-210ENST00000637053 NUDT8Q8WV74 236 aa4.38□□□□□ -1.71
VIM-210ENST00000637053 MEGF10Q96KG7 1140 aa4.38□□□□□ -1.71
VIM-210ENST00000637053 TRAIPQ9BWF2 469 aa4.38□□□□□ -1.71
VIM-210ENST00000637053 USP35Q9P2H5 1018 aa4.38□□□□□ -1.71
VIM-210ENST00000637053 RNF114Q9Y508 228 aa4.38□□□□□ -1.71
VIM-210ENST00000637053 EML1O00423 815 aa4.37□□□□□ -1.71
VIM-210ENST00000637053 SOCS7O14512 581 aa4.37□□□□□ -1.71
VIM-210ENST00000637053 ADAMTS4O75173 837 aa4.37□□□□□ -1.71
VIM-210ENST00000637053 MFAP1P55081 439 aaKnown RBP4.37□□□□□ -1.71
VIM-210ENST00000637053 FGD1P98174 961 aa4.37□□□□□ -1.71
VIM-210ENST00000637053 PRR23CQ6ZRP0 262 aa4.37□□□□□ -1.71
VIM-210ENST00000637053 JPH1Q9HDC5 661 aaPredicted RBP4.37□□□□□ -1.71
VIM-210ENST00000637053 E9PSI1 815 aa4.36□□□□□ -1.71
VIM-210ENST00000637053 ZNF326Q5BKZ1 582 aaKnown RBP4.36□□□□□ -1.71
VIM-210ENST00000637053 LCE4AQ5TA78 99 aa4.36□□□□□ -1.71
VIM-210ENST00000637053 SH3PXD2AQ5TCZ1 1133 aa4.36□□□□□ -1.71
VIM-210ENST00000637053 L3MBTL2Q969R5 705 aa4.36□□□□□ -1.71
VIM-210ENST00000637053 NAGPAQ9UK23 515 aa4.36□□□□□ -1.71
VIM-210ENST00000637053 SLC6A14Q9UN76 642 aa4.36□□□□□ -1.71
VIM-210ENST00000637053 GTF3C5Q9Y5Q8 519 aaPredicted RBP4.36□□□□□ -1.71
VIM-210ENST00000637053 NDUFB9Q9Y6M9 179 aa4.36□□□□□ -1.71
VIM-210ENST00000637053 FSTP19883 344 aa4.35□□□□□ -1.71
VIM-210ENST00000637053 SLFNL1Q499Z3 407 aa4.35□□□□□ -1.71
VIM-210ENST00000637053 AEBP1Q8IUX7 1158 aa4.35□□□□□ -1.71
VIM-210ENST00000637053 SIRT1Q96EB6 747 aa4.35□□□□□ -1.71
VIM-210ENST00000637053 CWC22Q9HCG8 908 aaKnown RBP4.35□□□□□ -1.71
VIM-210ENST00000637053 SCHIP1Q9P0W5 487 aaPredicted RBP4.35□□□□□ -1.71
VIM-210ENST00000637053 CLSTN1O94985 981 aa4.34□□□□□ -1.71
VIM-210ENST00000637053 NOS2P35228 1153 aa4.34□□□□□ -1.71
VIM-210ENST00000637053 GP2P55259 537 aaKnown RBP4.34□□□□□ -1.71
VIM-210ENST00000637053 KCNQ4P56696 695 aa4.34□□□□□ -1.71
VIM-210ENST00000637053 JAG1P78504 1218 aa4.34□□□□□ -1.71
VIM-210ENST00000637053 PSAPL1Q6NUJ1 521 aa4.34□□□□□ -1.71
VIM-210ENST00000637053 CCDC82Q8N4S0 544 aa4.34□□□□□ -1.71
VIM-210ENST00000637053 BHMTQ93088 406 aa4.34□□□□□ -1.71
VIM-210ENST00000637053 PCMTD1Q96MG8 357 aaPredicted RBP4.34□□□□□ -1.71
VIM-210ENST00000637053 PSMD1Q99460 953 aa4.34□□□□□ -1.71
VIM-210ENST00000637053 GOPCQ9HD26 462 aa4.34□□□□□ -1.71
VIM-210ENST00000637053 SNRKQ9NRH2 765 aa4.34□□□□□ -1.71
VIM-210ENST00000637053 BRPF3Q9ULD4 1205 aa4.34□□□□□ -1.71
VIM-210ENST00000637053 PCDHGA11Q9Y5H2 935 aa4.34□□□□□ -1.71
VIM-210ENST00000637053 KIAA1324LA8MWY0 1029 aaPredicted RBP4.33□□□□□ -1.72
VIM-210ENST00000637053 TBC1D8BQ0IIM8 1120 aa4.33□□□□□ -1.72
VIM-210ENST00000637053 NEUROD1Q13562 356 aa4.33□□□□□ -1.72
VIM-210ENST00000637053 TEAD4Q15561 434 aa4.33□□□□□ -1.72
VIM-210ENST00000637053 TBCELQ5QJ74 424 aa4.33□□□□□ -1.72
VIM-210ENST00000637053 FBXO11Q86XK2 927 aa4.33□□□□□ -1.72
VIM-210ENST00000637053 CERS3Q8IU89 383 aa4.33□□□□□ -1.72
VIM-210ENST00000637053 DZIP1LQ8IYY4 767 aaKnown RBP4.33□□□□□ -1.72
VIM-210ENST00000637053 HSH2DQ96JZ2 352 aa4.33□□□□□ -1.72
VIM-210ENST00000637053 KRTAP4-11Q9BYQ6 195 aa4.33□□□□□ -1.72
VIM-210ENST00000637053 IGFLR1Q9H665 355 aa4.33□□□□□ -1.72
VIM-210ENST00000637053 BRD7Q9NPI1 651 aa4.33□□□□□ -1.72
VIM-210ENST00000637053 KCNH4Q9UQ05 1017 aa4.33□□□□□ -1.72
VIM-210ENST00000637053 PPM1GO15355 546 aaPredicted RBP4.32□□□□□ -1.72
VIM-210ENST00000637053 TGFB1P01137 390 aa4.32□□□□□ -1.72
VIM-210ENST00000637053 EPHA4P54764 986 aa4.32□□□□□ -1.72
VIM-210ENST00000637053 PLAURQ03405 335 aa4.32□□□□□ -1.72
VIM-210ENST00000637053 TYRO3Q06418 890 aa4.32□□□□□ -1.72
VIM-210ENST00000637053 GRIK5Q16478 980 aa4.32□□□□□ -1.72
VIM-210ENST00000637053 ZNF280CQ8ND82 737 aa4.32□□□□□ -1.72
VIM-210ENST00000637053 CEP63Q96MT8 703 aa4.32□□□□□ -1.72
VIM-210ENST00000637053 UBE2OQ9C0C9 1292 aaKnown RBP4.32□□□□□ -1.72
VIM-210ENST00000637053 GZF1Q9H116 711 aaPredicted RBP4.32□□□□□ -1.72
VIM-210ENST00000637053 NEUROD4Q9HD90 331 aa4.32□□□□□ -1.72
VIM-210ENST00000637053 ARID4BQ4LE39 1312 aaPredicted RBP4.31□□□□□ -1.72
VIM-210ENST00000637053 SFI1A8K8P3 1242 aa4.31□□□□□ -1.72
VIM-210ENST00000637053 DEAF1O75398 565 aaPredicted RBP4.31□□□□□ -1.72
VIM-210ENST00000637053 ALX3O95076 343 aa4.31□□□□□ -1.72
VIM-210ENST00000637053 IRX6P78412 446 aaPredicted RBP4.31□□□□□ -1.72
VIM-210ENST00000637053 IRF5Q13568 498 aa4.31□□□□□ -1.72
VIM-210ENST00000637053 MSL1Q68DK7 614 aa4.31□□□□□ -1.72
VIM-210ENST00000637053 SLC51AQ86UW1 340 aa4.31□□□□□ -1.72
VIM-210ENST00000637053 PLPP7Q8NBV4 271 aa4.31□□□□□ -1.72
VIM-210ENST00000637053 DNAJB12Q9NXW2 375 aaKnown RBP4.31□□□□□ -1.72
VIM-210ENST00000637053 GPC6Q9Y625 555 aaPredicted RBP4.31□□□□□ -1.72
VIM-210ENST00000637053 RGS9O75916 674 aaPredicted RBP4.3□□□□□ -1.72
VIM-210ENST00000637053 EIF4G2P78344 907 aaKnown RBP eCLIP4.3□□□□□ -1.72
VIM-210ENST00000637053 IGF2-ASQ6U949 168 aa4.3□□□□□ -1.72
VIM-210ENST00000637053 SLC9A9Q8IVB4 645 aa4.3□□□□□ -1.72
VIM-210ENST00000637053 DTWD1Q8N5C7 304 aa4.3□□□□□ -1.72
VIM-210ENST00000637053 SERBP1Q8NC51 408 aaKnown RBP eCLIP4.3□□□□□ -1.72
VIM-210ENST00000637053 BANK1Q8NDB2 785 aa4.3□□□□□ -1.72
VIM-210ENST00000637053 RHPN1Q8TCX5 695 aa4.3□□□□□ -1.72
VIM-210ENST00000637053 ZNF358Q9NW07 568 aa4.3□□□□□ -1.72
VIM-210ENST00000637053 ZNF232Q9UNY5 417 aa4.3□□□□□ -1.72
VIM-210ENST00000637053 MAP7D1Q3KQU3 841 aa4.29□□□□□ -1.72
VIM-210ENST00000637053 TMED8Q6PL24 325 aaPredicted RBP4.29□□□□□ -1.72
VIM-210ENST00000637053 TNS4Q8IZW8 715 aa4.29□□□□□ -1.72
VIM-210ENST00000637053 TBC1D2BQ9UPU7 963 aa4.29□□□□□ -1.72
VIM-210ENST00000637053 DLL1O00548 723 aa4.28□□□□□ -1.72
VIM-210ENST00000637053 SPINK2P20155 84 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 122 ms