RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 UTP14AQ9BVJ6 771 aaKnown RBP25.91■■□□□ 1.74
PTCD3-220ENST00000627371 LAMB2P55268 1798 aa25.91■■□□□ 1.74
PTCD3-220ENST00000627371 A0A0G2JLW4 131 aa25.9■■□□□ 1.74
PTCD3-220ENST00000627371 DPEP1P16444 411 aa25.9■■□□□ 1.74
PTCD3-220ENST00000627371 PDE6BP35913 854 aa25.9■■□□□ 1.74
PTCD3-220ENST00000627371 BCL2L13Q9BXK5 485 aa25.9■■□□□ 1.74
PTCD3-220ENST00000627371 SMC4Q9NTJ3 1288 aa25.9■■□□□ 1.74
PTCD3-220ENST00000627371 DDX60Q8IY21 1712 aaKnown RBP25.89■■□□□ 1.74
PTCD3-220ENST00000627371 NEXNQ0ZGT2 675 aa25.89■■□□□ 1.74
PTCD3-220ENST00000627371 ERFEQ4G0M1 354 aa25.89■■□□□ 1.74
PTCD3-220ENST00000627371 DNAAF4Q8WXU2 420 aa25.89■■□□□ 1.74
PTCD3-220ENST00000627371 PDZRN3Q9UPQ7 1066 aa25.89■■□□□ 1.74
PTCD3-220ENST00000627371 ARFGEF1Q9Y6D6 1849 aa25.88■■□□□ 1.73
PTCD3-220ENST00000627371 CACNA1SQ13698 1873 aa25.88■■□□□ 1.73
PTCD3-220ENST00000627371 CHRNA5P30532 468 aa25.88■■□□□ 1.73
PTCD3-220ENST00000627371 RARSP54136 660 aaKnown RBP25.88■■□□□ 1.73
PTCD3-220ENST00000627371 PTPRCP08575 1304 aa25.88■■□□□ 1.73
PTCD3-220ENST00000627371 KCNA3P22001 575 aa25.87■■□□□ 1.73
PTCD3-220ENST00000627371 BRPF1P55201 1214 aaPredicted RBP25.87■■□□□ 1.73
PTCD3-220ENST00000627371 CCDC191Q8NCU4 936 aa25.87■■□□□ 1.73
PTCD3-220ENST00000627371 TRMT112Q9UI30 125 aaKnown RBP25.87■■□□□ 1.73
PTCD3-220ENST00000627371 UTRNP46939 3433 aa25.86■■□□□ 1.73
PTCD3-220ENST00000627371 IGKV5-2P06315 115 aa25.86■■□□□ 1.73
PTCD3-220ENST00000627371 C2CD5Q86YS7 1000 aa25.86■■□□□ 1.73
PTCD3-220ENST00000627371 SH3TC1Q8TE82 1336 aa25.86■■□□□ 1.73
PTCD3-220ENST00000627371 KLRG2A4D1S0 409 aaPredicted RBP25.85■■□□□ 1.73
PTCD3-220ENST00000627371 F6X3S4 739 aa25.85■■□□□ 1.73
PTCD3-220ENST00000627371 H0YIN7 160 aa25.85■■□□□ 1.73
PTCD3-220ENST00000627371 CWC25Q9NXE8 425 aaPredicted RBP25.85■■□□□ 1.73
PTCD3-220ENST00000627371 SLC10A5Q5PT55 438 aa25.84■■□□□ 1.73
PTCD3-220ENST00000627371 NEURL1BA8MQ27 555 aa25.83■■□□□ 1.73
PTCD3-220ENST00000627371 PIM2Q9P1W9 311 aa25.83■■□□□ 1.73
PTCD3-220ENST00000627371 SRGNP10124 158 aa25.82■■□□□ 1.72
PTCD3-220ENST00000627371 CWF19L2Q2TBE0 894 aaKnown RBP25.82■■□□□ 1.72
PTCD3-220ENST00000627371 ZBTB38Q8NAP3 1195 aaPredicted RBP25.82■■□□□ 1.72
PTCD3-220ENST00000627371 LINS1Q8NG48 757 aa25.82■■□□□ 1.72
PTCD3-220ENST00000627371 WWC3Q9ULE0 1092 aa25.82■■□□□ 1.72
PTCD3-220ENST00000627371 MYH3P11055 1940 aa25.82■■□□□ 1.72
PTCD3-220ENST00000627371 DCAF8L1A6NGE4 600 aa25.81■■□□□ 1.72
PTCD3-220ENST00000627371 GPR162Q16538 588 aa25.81■■□□□ 1.72
PTCD3-220ENST00000627371 PELP1Q8IZL8 1130 aaKnown RBP25.81■■□□□ 1.72
PTCD3-220ENST00000627371 SYNE4Q8N205 404 aa25.81■■□□□ 1.72
PTCD3-220ENST00000627371 FAM89AQ96GI7 184 aa25.81■■□□□ 1.72
PTCD3-220ENST00000627371 YTHDC1Q96MU7 727 aaKnown RBP25.81■■□□□ 1.72
PTCD3-220ENST00000627371 KIF16BQ96L93 1317 aa25.81■■□□□ 1.72
PTCD3-220ENST00000627371 PCCAP05165 728 aaPredicted RBP25.8■■□□□ 1.72
PTCD3-220ENST00000627371 YBX3P16989 372 aaKnown RBP eCLIP25.8■■□□□ 1.72
PTCD3-220ENST00000627371 CRY2Q49AN0 593 aa25.8■■□□□ 1.72
PTCD3-220ENST00000627371 BEND3Q5T5X7 828 aa25.8■■□□□ 1.72
PTCD3-220ENST00000627371 MASTLQ96GX5 879 aa25.8■■□□□ 1.72
PTCD3-220ENST00000627371 STYK1Q6J9G0 422 aa25.79■■□□□ 1.72
PTCD3-220ENST00000627371 NLRP3Q96P20 1036 aa25.79■■□□□ 1.72
PTCD3-220ENST00000627371 SLX4Q8IY92 1834 aa25.79■■□□□ 1.72
PTCD3-220ENST00000627371 HCLS1P14317 486 aaPredicted RBP25.78■■□□□ 1.72
PTCD3-220ENST00000627371 NPR1P16066 1061 aa25.78■■□□□ 1.72
PTCD3-220ENST00000627371 DALRD3Q5D0E6 543 aaKnown RBP25.78■■□□□ 1.72
PTCD3-220ENST00000627371 ZNF622Q969S3 477 aaKnown RBP eCLIP25.78■■□□□ 1.72
PTCD3-220ENST00000627371 NOB1Q9ULX3 412 aaKnown RBP25.78■■□□□ 1.72
PTCD3-220ENST00000627371 BCS1LQ9Y276 419 aa25.78■■□□□ 1.72
PTCD3-220ENST00000627371 GCKRQ14397 625 aa25.77■■□□□ 1.72
PTCD3-220ENST00000627371 RTL5Q5HYW3 569 aaPredicted RBP25.77■■□□□ 1.72
PTCD3-220ENST00000627371 SLC4A10Q6U841 1118 aa25.77■■□□□ 1.72
PTCD3-220ENST00000627371 C3orf67Q6ZVT6 689 aa25.77■■□□□ 1.72
PTCD3-220ENST00000627371 TTLL6Q8N841 843 aa25.77■■□□□ 1.72
PTCD3-220ENST00000627371 IRS4O14654 1257 aaPredicted RBP25.76■■□□□ 1.71
PTCD3-220ENST00000627371 BCAR3O75815 825 aa25.76■■□□□ 1.71
PTCD3-220ENST00000627371 CNKSR1Q969H4 720 aa25.76■■□□□ 1.71
PTCD3-220ENST00000627371 CDHR2Q9BYE9 1310 aa25.76■■□□□ 1.71
PTCD3-220ENST00000627371 CHD4Q14839 1912 aa25.76■■□□□ 1.71
PTCD3-220ENST00000627371 ARHGAP45Q92619 1136 aa25.75■■□□□ 1.71
PTCD3-220ENST00000627371 ALDH1L1O75891 902 aa25.74■■□□□ 1.71
PTCD3-220ENST00000627371 HSP90B1P14625 803 aaKnown RBP25.74■■□□□ 1.71
PTCD3-220ENST00000627371 RPGRQ92834 1020 aaKnown RBP25.74■■□□□ 1.71
PTCD3-220ENST00000627371 API5Q9BZZ5 524 aaKnown RBP25.74■■□□□ 1.71
PTCD3-220ENST00000627371 SRCIN1Q9C0H9 1055 aa25.74■■□□□ 1.71
PTCD3-220ENST00000627371 TAF1P21675 1872 aa25.73■■□□□ 1.71
PTCD3-220ENST00000627371 H7C1W4 665 aa25.73■■□□□ 1.71
PTCD3-220ENST00000627371 GRIN3BO60391 1043 aa25.73■■□□□ 1.71
PTCD3-220ENST00000627371 HOXA10P31260 410 aaPredicted RBP25.73■■□□□ 1.71
PTCD3-220ENST00000627371 JARID2Q92833 1246 aaPredicted RBP25.73■■□□□ 1.71
PTCD3-220ENST00000627371 UBE3BQ7Z3V4 1068 aa25.72■■□□□ 1.71
PTCD3-220ENST00000627371 IPO8O15397 1037 aaKnown RBP25.71■■□□□ 1.71
PTCD3-220ENST00000627371 ALDH1B1P30837 517 aa25.71■■□□□ 1.71
PTCD3-220ENST00000627371 PRPF40BQ6NWY9 871 aaKnown RBP25.71■■□□□ 1.71
PTCD3-220ENST00000627371 PDE8AO60658 829 aa25.7■■□□□ 1.7
PTCD3-220ENST00000627371 CASP7P55210 303 aa25.7■■□□□ 1.7
PTCD3-220ENST00000627371 SF3B3Q15393 1217 aaKnown RBP25.7■■□□□ 1.7
PTCD3-220ENST00000627371 RBM17Q96I25 401 aaKnown RBP25.7■■□□□ 1.7
PTCD3-220ENST00000627371 CRAMP1Q96RY5 1269 aa25.7■■□□□ 1.7
PTCD3-220ENST00000627371 FER1L6Q2WGJ9 1857 aa25.7■■□□□ 1.7
PTCD3-220ENST00000627371 GRM8O00222 908 aa25.69■■□□□ 1.7
PTCD3-220ENST00000627371 FRAT1Q92837 279 aaPredicted RBP25.69■■□□□ 1.7
PTCD3-220ENST00000627371 ATF7IPQ6VMQ6 1270 aa25.68■■□□□ 1.7
PTCD3-220ENST00000627371 ABCC4O15439 1325 aa25.67■■□□□ 1.7
PTCD3-220ENST00000627371 TRIM27P14373 513 aa25.67■■□□□ 1.7
PTCD3-220ENST00000627371 CCT4P50991 539 aaKnown RBP25.67■■□□□ 1.7
PTCD3-220ENST00000627371 PLA2G12BQ9BX93 195 aa25.67■■□□□ 1.7
PTCD3-220ENST00000627371 C9orf78Q9NZ63 289 aaPredicted RBP25.67■■□□□ 1.7
PTCD3-220ENST00000627371 ZKSCAN2Q63HK3 967 aa25.66■■□□□ 1.7
PTCD3-220ENST00000627371 DDX46Q7L014 1031 aaKnown RBP25.66■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms