RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 NBPF15Q8N660 670 aa10.41□□□□□ -0.74
CLK1-215ENST00000621181 JDP2Q8WYK2 163 aa10.41□□□□□ -0.74
CLK1-215ENST00000621181 FZD9O00144 591 aa10.4□□□□□ -0.74
CLK1-215ENST00000621181 CNTROBQ8N137 903 aa10.4□□□□□ -0.74
CLK1-215ENST00000621181 GPC2Q8N158 579 aa10.4□□□□□ -0.74
CLK1-215ENST00000621181 SYNE4Q8N205 404 aa10.4□□□□□ -0.74
CLK1-215ENST00000621181 ABT1Q9ULW3 272 aaKnown RBP10.4□□□□□ -0.74
CLK1-215ENST00000621181 LBX1P52954 281 aa10.4□□□□□ -0.75
CLK1-215ENST00000621181 HLFQ16534 295 aa10.4□□□□□ -0.75
CLK1-215ENST00000621181 DEFB115Q30KQ5 88 aa10.4□□□□□ -0.75
CLK1-215ENST00000621181 NGEFQ8N5V2 710 aa10.4□□□□□ -0.75
CLK1-215ENST00000621181 NYXQ9GZU5 481 aa10.4□□□□□ -0.75
CLK1-215ENST00000621181 WBP1LQ9NX94 342 aa10.4□□□□□ -0.75
CLK1-215ENST00000621181 LMOD1P29536 600 aaPredicted RBP10.39□□□□□ -0.75
CLK1-215ENST00000621181 NUTM1Q86Y26 1132 aa10.39□□□□□ -0.75
CLK1-215ENST00000621181 RPGRQ92834 1020 aaKnown RBP10.39□□□□□ -0.75
CLK1-215ENST00000621181 PSMD1Q99460 953 aa10.39□□□□□ -0.75
CLK1-215ENST00000621181 RASSF10A6NK89 507 aa10.38□□□□□ -0.75
CLK1-215ENST00000621181 EIF6P56537 245 aaKnown RBP10.38□□□□□ -0.75
CLK1-215ENST00000621181 MAP2K1Q02750 393 aaPredicted RBP10.38□□□□□ -0.75
CLK1-215ENST00000621181 TAF7Q15545 349 aaPredicted RBP10.38□□□□□ -0.75
CLK1-215ENST00000621181 CRY2Q49AN0 593 aa10.38□□□□□ -0.75
CLK1-215ENST00000621181 MIS18AQ9NYP9 233 aa10.38□□□□□ -0.75
CLK1-215ENST00000621181 GJA3Q9Y6H8 435 aa10.38□□□□□ -0.75
CLK1-215ENST00000621181 ABCC12Q96J65 1359 aa10.38□□□□□ -0.75
CLK1-215ENST00000621181 ADAMTSL1Q8N6G6 1762 aa10.38□□□□□ -0.75
CLK1-215ENST00000621181 HTATSF1O43719 755 aaKnown RBP10.37□□□□□ -0.75
CLK1-215ENST00000621181 NEFMP07197 916 aa10.37□□□□□ -0.75
CLK1-215ENST00000621181 CC2D2BQ6DHV5 1058 aa10.37□□□□□ -0.75
CLK1-215ENST00000621181 PAXIP1Q6ZW49 1069 aaPredicted RBP10.37□□□□□ -0.75
CLK1-215ENST00000621181 WDR33Q9C0J8 1336 aaKnown RBP10.37□□□□□ -0.75
CLK1-215ENST00000621181 ERVV-1B6SEH8 477 aa10.37□□□□□ -0.75
CLK1-215ENST00000621181 KIF6Q6ZMV9 814 aa10.37□□□□□ -0.75
CLK1-215ENST00000621181 LARGE2Q8N3Y3 721 aa10.37□□□□□ -0.75
CLK1-215ENST00000621181 DDX21Q9NR30 783 aaKnown RBP eCLIP10.37□□□□□ -0.75
CLK1-215ENST00000621181 CENPBP07199 599 aaPredicted RBP10.36□□□□□ -0.75
CLK1-215ENST00000621181 PPP2R1AP30153 589 aa10.36□□□□□ -0.75
CLK1-215ENST00000621181 GRM1Q13255 1194 aa10.36□□□□□ -0.75
CLK1-215ENST00000621181 BEGAINQ9BUH8 593 aa10.36□□□□□ -0.75
CLK1-215ENST00000621181 RRP7AQ9Y3A4 280 aaKnown RBP10.36□□□□□ -0.75
CLK1-215ENST00000621181 MAP3K15Q6ZN16 1313 aa10.36□□□□□ -0.75
CLK1-215ENST00000621181 LAMB4A4D0S4 1761 aa10.36□□□□□ -0.75
CLK1-215ENST00000621181 TCERG1O14776 1098 aaKnown RBP10.35□□□□□ -0.75
CLK1-215ENST00000621181 MYL6BP14649 208 aa10.35□□□□□ -0.75
CLK1-215ENST00000621181 GPTP24298 496 aa10.35□□□□□ -0.75
CLK1-215ENST00000621181 GRIPAP1Q4V328 841 aa10.35□□□□□ -0.75
CLK1-215ENST00000621181 MIER1Q8N108 512 aa10.35□□□□□ -0.75
CLK1-215ENST00000621181 TMX4Q9H1E5 349 aaPredicted RBP10.35□□□□□ -0.75
CLK1-215ENST00000621181 ZBTB3Q9H5J0 574 aa10.35□□□□□ -0.75
CLK1-215ENST00000621181 NUP98P52948 1817 aa10.35□□□□□ -0.75
CLK1-215ENST00000621181 SNED1Q8TER0 1413 aa10.35□□□□□ -0.75
CLK1-215ENST00000621181 HSPA8P11142 646 aaKnown RBP10.35□□□□□ -0.75
CLK1-215ENST00000621181 EPS15P42566 896 aa10.35□□□□□ -0.75
CLK1-215ENST00000621181 SCNN1DP51172 638 aa10.35□□□□□ -0.75
CLK1-215ENST00000621181 NIM1KQ8IY84 436 aa10.35□□□□□ -0.75
CLK1-215ENST00000621181 PNISRQ8TF01 805 aaKnown RBP10.35□□□□□ -0.75
CLK1-215ENST00000621181 RBM17Q96I25 401 aaKnown RBP10.35□□□□□ -0.75
CLK1-215ENST00000621181 ZBTB12Q9Y330 459 aaPredicted RBP10.35□□□□□ -0.75
CLK1-215ENST00000621181 PPEF1O14829 653 aaPredicted RBP10.34□□□□□ -0.75
CLK1-215ENST00000621181 HOXA10P31260 410 aaPredicted RBP10.34□□□□□ -0.75
CLK1-215ENST00000621181 ECE1P42892 770 aa10.34□□□□□ -0.75
CLK1-215ENST00000621181 TTLL7Q6ZT98 887 aa10.34□□□□□ -0.75
CLK1-215ENST00000621181 ABHD8Q96I13 439 aa10.34□□□□□ -0.75
CLK1-215ENST00000621181 CAPNS2Q96L46 248 aa10.34□□□□□ -0.75
CLK1-215ENST00000621181 UBN2Q6ZU65 1347 aa10.34□□□□□ -0.75
CLK1-215ENST00000621181 COL4A5P29400 1685 aa10.34□□□□□ -0.75
CLK1-215ENST00000621181 PPIP5K2O43314 1243 aa10.33□□□□□ -0.76
CLK1-215ENST00000621181 SUSD4Q5VX71 490 aa10.33□□□□□ -0.76
CLK1-215ENST00000621181 USP50Q70EL3 339 aaPredicted RBP10.33□□□□□ -0.76
CLK1-215ENST00000621181 IBTKQ9P2D0 1353 aaPredicted RBP10.33□□□□□ -0.76
CLK1-215ENST00000621181 LTBP1Q14766 1721 aa10.33□□□□□ -0.76
CLK1-215ENST00000621181 RIC1Q4ADV7 1423 aa10.33□□□□□ -0.76
CLK1-215ENST00000621181 EIF4A1P60842 406 aaKnown RBP10.33□□□□□ -0.76
CLK1-215ENST00000621181 FMR1Q06787 632 aaKnown RBP eCLIP10.33□□□□□ -0.76
CLK1-215ENST00000621181 CYP4F22Q6NT55 531 aa10.33□□□□□ -0.76
CLK1-215ENST00000621181 PPP1R42Q7Z4L9 355 aa10.33□□□□□ -0.76
CLK1-215ENST00000621181 GPR101Q96P66 508 aaPredicted RBP10.33□□□□□ -0.76
CLK1-215ENST00000621181 CRAMP1Q96RY5 1269 aa10.33□□□□□ -0.76
CLK1-215ENST00000621181 TRAF5O00463 557 aa10.32□□□□□ -0.76
CLK1-215ENST00000621181 AOC3Q16853 763 aa10.32□□□□□ -0.76
CLK1-215ENST00000621181 FAM161AQ3B820 660 aa10.32□□□□□ -0.76
CLK1-215ENST00000621181 GIGYF2Q6Y7W6 1299 aaKnown RBP10.32□□□□□ -0.76
CLK1-215ENST00000621181 SLC51AQ86UW1 340 aa10.32□□□□□ -0.76
CLK1-215ENST00000621181 NLRP3Q96P20 1036 aa10.32□□□□□ -0.76
CLK1-215ENST00000621181 THUMPD2Q9BTF0 503 aaKnown RBP10.32□□□□□ -0.76
CLK1-215ENST00000621181 DLG5Q8TDM6 1919 aa10.31□□□□□ -0.76
CLK1-215ENST00000621181 KDM3BQ7LBC6 1761 aa10.31□□□□□ -0.76
CLK1-215ENST00000621181 NTSR2O95665 410 aa10.31□□□□□ -0.76
CLK1-215ENST00000621181 CST9Q5W186 159 aa10.31□□□□□ -0.76
CLK1-215ENST00000621181 ZNF34Q8IZ26 560 aa10.31□□□□□ -0.76
CLK1-215ENST00000621181 GPRC5DQ9NZD1 345 aa10.31□□□□□ -0.76
CLK1-215ENST00000621181 TRPM7Q96QT4 1865 aa10.31□□□□□ -0.76
CLK1-215ENST00000621181 PARP10Q53GL7 1025 aa10.3□□□□□ -0.76
CLK1-215ENST00000621181 ADARB2Q9NS39 739 aaKnown RBP10.3□□□□□ -0.76
CLK1-215ENST00000621181 GTF3C3Q9Y5Q9 886 aa10.3□□□□□ -0.76
CLK1-215ENST00000621181 TLL2Q9Y6L7 1015 aa10.3□□□□□ -0.76
CLK1-215ENST00000621181 CCDC85CA6NKD9 419 aa10.3□□□□□ -0.76
CLK1-215ENST00000621181 C3orf67Q6ZVT6 689 aa10.3□□□□□ -0.76
CLK1-215ENST00000621181 SUPT20HQ8NEM7 779 aa10.3□□□□□ -0.76
CLK1-215ENST00000621181 UTP14AQ9BVJ6 771 aaKnown RBP10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms