RNA–Protein interactions for RNA: ENST00000620787.4

PDLIM3-212, Transcript of PDZ and LIM domain 3, humanhuman

TSL 4 BASIC

Gene PDLIM3, Length 2,352 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-212ENST00000620787 LMO7Q8WWI1 1683 aa23.28■■□□□ 1.32
PDLIM3-212ENST00000620787 PDIA4P13667 645 aaKnown RBP23.28■■□□□ 1.32
PDLIM3-212ENST00000620787 PTGS1P23219 599 aa23.28■■□□□ 1.32
PDLIM3-212ENST00000620787 DMTNQ08495 405 aa23.28■■□□□ 1.32
PDLIM3-212ENST00000620787 CHAF1AQ13111 956 aaPredicted RBP23.28■■□□□ 1.32
PDLIM3-212ENST00000620787 CAMK4Q16566 473 aa23.28■■□□□ 1.32
PDLIM3-212ENST00000620787 FAM227BQ96M60 508 aa23.28■■□□□ 1.32
PDLIM3-212ENST00000620787 CHMP3Q9Y3E7 222 aa23.28■■□□□ 1.32
PDLIM3-212ENST00000620787 ATP2B3Q16720 1220 aa23.27■■□□□ 1.32
PDLIM3-212ENST00000620787 LUZP1Q86V48 1076 aa23.27■■□□□ 1.32
PDLIM3-212ENST00000620787 ADGRL3Q9HAR2 1447 aa23.27■■□□□ 1.32
PDLIM3-212ENST00000620787 SLC27A2O14975 620 aa23.27■■□□□ 1.32
PDLIM3-212ENST00000620787 NMIQ13287 307 aaPredicted RBP23.27■■□□□ 1.32
PDLIM3-212ENST00000620787 UTP14CQ5TAP6 766 aaKnown RBP23.27■■□□□ 1.32
PDLIM3-212ENST00000620787 ERC1Q8IUD2 1116 aa23.27■■□□□ 1.32
PDLIM3-212ENST00000620787 ANKRD7Q92527 254 aa23.26■■□□□ 1.31
PDLIM3-212ENST00000620787 SNRKQ9NRH2 765 aa23.26■■□□□ 1.31
PDLIM3-212ENST00000620787 NPHP4O75161 1426 aaPredicted RBP23.26■■□□□ 1.31
PDLIM3-212ENST00000620787 CTIFO43310 598 aaKnown RBP23.26■■□□□ 1.31
PDLIM3-212ENST00000620787 PDCP20941 246 aa23.26■■□□□ 1.31
PDLIM3-212ENST00000620787 AACSQ86V21 672 aa23.26■■□□□ 1.31
PDLIM3-212ENST00000620787 CHMP4AQ9BY43 222 aa23.26■■□□□ 1.31
PDLIM3-212ENST00000620787 KCNJ4P48050 445 aa23.25■■□□□ 1.31
PDLIM3-212ENST00000620787 CBX8Q9HC52 389 aa23.25■■□□□ 1.31
PDLIM3-212ENST00000620787 ANKARQ7Z5J8 1434 aa23.25■■□□□ 1.31
PDLIM3-212ENST00000620787 PSMA5P28066 241 aa23.25■■□□□ 1.31
PDLIM3-212ENST00000620787 CBX1P83916 185 aa23.25■■□□□ 1.31
PDLIM3-212ENST00000620787 DACT1Q9NYF0 836 aa23.25■■□□□ 1.31
PDLIM3-212ENST00000620787 ALDH1L1O75891 902 aa23.24■■□□□ 1.31
PDLIM3-212ENST00000620787 ANO6Q4KMQ2 910 aa23.24■■□□□ 1.31
PDLIM3-212ENST00000620787 RBM43Q6ZSC3 357 aaKnown RBP23.24■■□□□ 1.31
PDLIM3-212ENST00000620787 CKAP2LQ8IYA6 745 aa23.24■■□□□ 1.31
PDLIM3-212ENST00000620787 PDCL2Q8N4E4 241 aa23.24■■□□□ 1.31
PDLIM3-212ENST00000620787 TNMDQ9H2S6 317 aa23.24■■□□□ 1.31
PDLIM3-212ENST00000620787 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.24■■□□□ 1.31
PDLIM3-212ENST00000620787 SETD1BQ9UPS6 1966 aaKnown RBP23.24■■□□□ 1.31
PDLIM3-212ENST00000620787 RGPD2P0DJD1 1756 aa23.24■■□□□ 1.31
PDLIM3-212ENST00000620787 HIP1O00291 1037 aa23.23■■□□□ 1.31
PDLIM3-212ENST00000620787 C9orf78Q9NZ63 289 aaPredicted RBP23.23■■□□□ 1.31
PDLIM3-212ENST00000620787 ABTB2Q8N961 1025 aa23.23■■□□□ 1.31
PDLIM3-212ENST00000620787 SCAND2PQ9GZW5 306 aaPredicted RBP23.23■■□□□ 1.31
PDLIM3-212ENST00000620787 MAP3K2Q9Y2U5 619 aa23.23■■□□□ 1.31
PDLIM3-212ENST00000620787 CCDC186Q7Z3E2 898 aa23.22■■□□□ 1.31
PDLIM3-212ENST00000620787 TCEANC2Q96MN5 208 aa23.22■■□□□ 1.31
PDLIM3-212ENST00000620787 ALDH8A1Q9H2A2 487 aaPredicted RBP23.22■■□□□ 1.31
PDLIM3-212ENST00000620787 NPHP3Q7Z494 1330 aa23.22■■□□□ 1.31
PDLIM3-212ENST00000620787 A0A0D9SFI3 127 aa23.22■■□□□ 1.31
PDLIM3-212ENST00000620787 TOB2Q14106 344 aaPredicted RBP23.22■■□□□ 1.31
PDLIM3-212ENST00000620787 BLOC1S2Q6QNY1 142 aa23.22■■□□□ 1.31
PDLIM3-212ENST00000620787 CLSTN2Q9H4D0 955 aa23.22■■□□□ 1.31
PDLIM3-212ENST00000620787 DDX19AQ9NUU7 478 aaKnown RBP23.22■■□□□ 1.31
PDLIM3-212ENST00000620787 TBX22Q9Y458 520 aa23.22■■□□□ 1.31
PDLIM3-212ENST00000620787 TAF6LQ9Y6J9 622 aa23.22■■□□□ 1.31
PDLIM3-212ENST00000620787 SASH1O94885 1247 aa23.21■■□□□ 1.31
PDLIM3-212ENST00000620787 RPS6KB1P23443 525 aa23.21■■□□□ 1.31
PDLIM3-212ENST00000620787 ANKRD1Q15327 319 aa23.21■■□□□ 1.31
PDLIM3-212ENST00000620787 LARP1Q6PKG0 1096 aaKnown RBP23.21■■□□□ 1.31
PDLIM3-212ENST00000620787 PLA2G4DQ86XP0 818 aa23.21■■□□□ 1.31
PDLIM3-212ENST00000620787 LEO1Q8WVC0 666 aaPredicted RBP23.21■■□□□ 1.31
PDLIM3-212ENST00000620787 SPATA32Q96LK8 384 aa23.21■■□□□ 1.31
PDLIM3-212ENST00000620787 DBF4Q9UBU7 674 aaPredicted RBP23.21■■□□□ 1.31
PDLIM3-212ENST00000620787 SLIT1O75093 1534 aa23.21■■□□□ 1.31
PDLIM3-212ENST00000620787 EAF2Q96CJ1 260 aaPredicted RBP23.21■■□□□ 1.31
PDLIM3-212ENST00000620787 EID1Q9Y6B2 187 aa23.21■■□□□ 1.31
PDLIM3-212ENST00000620787 MED23Q9ULK4 1368 aa23.21■■□□□ 1.31
PDLIM3-212ENST00000620787 JCADQ9P266 1359 aa23.2■■□□□ 1.3
PDLIM3-212ENST00000620787 LRMPQ12912 555 aa23.2■■□□□ 1.3
PDLIM3-212ENST00000620787 NBPF6Q5VWK0 638 aa23.2■■□□□ 1.3
PDLIM3-212ENST00000620787 TDRD7Q8NHU6 1098 aaKnown RBP23.2■■□□□ 1.3
PDLIM3-212ENST00000620787 NBPF4Q96M43 638 aa23.2■■□□□ 1.3
PDLIM3-212ENST00000620787 TFIP11Q9UBB9 837 aaKnown RBP23.2■■□□□ 1.3
PDLIM3-212ENST00000620787 BTBD11A6QL63 1104 aa23.2■■□□□ 1.3
PDLIM3-212ENST00000620787 ZNF75DP51815 510 aa23.2■■□□□ 1.3
PDLIM3-212ENST00000620787 CWF19L2Q2TBE0 894 aaKnown RBP23.2■■□□□ 1.3
PDLIM3-212ENST00000620787 NRBP1Q9UHY1 535 aa23.2■■□□□ 1.3
PDLIM3-212ENST00000620787 PROSER3Q2NL68 480 aa23.19■■□□□ 1.3
PDLIM3-212ENST00000620787 ARHGAP23Q9P227 1491 aa23.19■■□□□ 1.3
PDLIM3-212ENST00000620787 GOLGA6L4A6NEF3 574 aa23.19■■□□□ 1.3
PDLIM3-212ENST00000620787 RNF20Q5VTR2 975 aa23.19■■□□□ 1.3
PDLIM3-212ENST00000620787 KSR2Q6VAB6 950 aa23.19■■□□□ 1.3
PDLIM3-212ENST00000620787 ARHGAP30Q7Z6I6 1101 aaPredicted RBP23.19■■□□□ 1.3
PDLIM3-212ENST00000620787 CCDC8Q9H0W5 538 aaPredicted RBP23.19■■□□□ 1.3
PDLIM3-212ENST00000620787 TLR7Q9NYK1 1049 aaKnown RBP23.19■■□□□ 1.3
PDLIM3-212ENST00000620787 TEFQ10587 303 aa23.18■■□□□ 1.3
PDLIM3-212ENST00000620787 KAZALD1Q96I82 304 aa23.18■■□□□ 1.3
PDLIM3-212ENST00000620787 IP6K1Q92551 441 aa23.18■■□□□ 1.3
PDLIM3-212ENST00000620787 SUCLG2Q96I99 432 aa23.18■■□□□ 1.3
PDLIM3-212ENST00000620787 ZHX1Q9UKY1 873 aaPredicted RBP23.18■■□□□ 1.3
PDLIM3-212ENST00000620787 NFAT5O94916 1531 aa23.17■■□□□ 1.3
PDLIM3-212ENST00000620787 NR1I2O75469 434 aa23.17■■□□□ 1.3
PDLIM3-212ENST00000620787 ZSCAN25Q6NSZ9 544 aa23.17■■□□□ 1.3
PDLIM3-212ENST00000620787 PGBD1Q96JS3 809 aa23.17■■□□□ 1.3
PDLIM3-212ENST00000620787 TRIM5Q9C035 493 aa23.17■■□□□ 1.3
PDLIM3-212ENST00000620787 HDAC5Q9UQL6 1122 aa23.17■■□□□ 1.3
PDLIM3-212ENST00000620787 MYH15Q9Y2K3 1946 aa23.17■■□□□ 1.3
PDLIM3-212ENST00000620787 DRC7Q8IY82 874 aa23.16■■□□□ 1.3
PDLIM3-212ENST00000620787 FSD1Q9BTV5 496 aa23.16■■□□□ 1.3
PDLIM3-212ENST00000620787 TSGA10IPQ3SY00 556 aa23.16■■□□□ 1.3
PDLIM3-212ENST00000620787 AKAP4Q5JQC9 854 aa23.16■■□□□ 1.3
PDLIM3-212ENST00000620787 NCBP1Q09161 790 aaKnown RBP23.15■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms