RNA–Protein interactions for RNA: ENST00000620514.1

HMGN3-203, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 3 BASIC

Gene HMGN3, Length 1,010 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-203ENST00000620514 C16orf71Q8IYS4 520 aaPredicted RBP22.32■■□□□ 1.16
HMGN3-203ENST00000620514 UTP14AQ9BVJ6 771 aaKnown RBP22.32■■□□□ 1.16
HMGN3-203ENST00000620514 DICER1Q9UPY3 1922 aaKnown RBP22.31■■□□□ 1.16
HMGN3-203ENST00000620514 GNAI1P63096 354 aa22.31■■□□□ 1.16
HMGN3-203ENST00000620514 RBM46Q8TBY0 533 aaKnown RBP22.31■■□□□ 1.16
HMGN3-203ENST00000620514 ELL2O00472 640 aaPredicted RBP22.3■■□□□ 1.16
HMGN3-203ENST00000620514 ANP32CO43423 234 aa22.3■■□□□ 1.16
HMGN3-203ENST00000620514 CALD1Q05682 793 aaKnown RBP22.3■■□□□ 1.16
HMGN3-203ENST00000620514 TCIRG1Q13488 830 aa22.3■■□□□ 1.16
HMGN3-203ENST00000620514 HSP90AB3PQ58FF7 597 aa22.3■■□□□ 1.16
HMGN3-203ENST00000620514 NLRP10Q86W26 655 aa22.3■■□□□ 1.16
HMGN3-203ENST00000620514 RPGRQ92834 1020 aaKnown RBP22.3■■□□□ 1.16
HMGN3-203ENST00000620514 DBF4Q9UBU7 674 aaPredicted RBP22.3■■□□□ 1.16
HMGN3-203ENST00000620514 ANKRD36CQ5JPF3 1778 aa22.3■■□□□ 1.16
HMGN3-203ENST00000620514 HOXA10P31260 410 aaPredicted RBP22.29■■□□□ 1.16
HMGN3-203ENST00000620514 FKBP4Q02790 459 aaKnown RBP eCLIP22.29■■□□□ 1.16
HMGN3-203ENST00000620514 SLC51AQ86UW1 340 aa22.29■■□□□ 1.16
HMGN3-203ENST00000620514 ZNF428Q96B54 188 aa22.29■■□□□ 1.16
HMGN3-203ENST00000620514 MRS2Q9HD23 443 aa22.29■■□□□ 1.16
HMGN3-203ENST00000620514 ZNF277Q9NRM2 450 aaPredicted RBP22.29■■□□□ 1.16
HMGN3-203ENST00000620514 SYNE4Q8N205 404 aa22.28■■□□□ 1.16
HMGN3-203ENST00000620514 SLC10A5Q5PT55 438 aa22.27■■□□□ 1.16
HMGN3-203ENST00000620514 DPY19L2Q6NUT2 758 aa22.27■■□□□ 1.16
HMGN3-203ENST00000620514 RTKN2Q8IZC4 609 aa22.27■■□□□ 1.16
HMGN3-203ENST00000620514 C8orf58Q8NAV2 365 aa22.27■■□□□ 1.16
HMGN3-203ENST00000620514 PLBD2Q8NHP8 589 aa22.27■■□□□ 1.16
HMGN3-203ENST00000620514 SNED1Q8TER0 1413 aa22.26■■□□□ 1.15
HMGN3-203ENST00000620514 POTECB2RU33 542 aa22.26■■□□□ 1.15
HMGN3-203ENST00000620514 VEGFAP15692 232 aaPredicted RBP22.26■■□□□ 1.15
HMGN3-203ENST00000620514 ANKRD13DQ6ZTN6 518 aa22.26■■□□□ 1.15
HMGN3-203ENST00000620514 RBM17Q96I25 401 aaKnown RBP22.26■■□□□ 1.15
HMGN3-203ENST00000620514 NLRP3Q96P20 1036 aa22.26■■□□□ 1.15
HMGN3-203ENST00000620514 CRAMP1Q96RY5 1269 aa22.26■■□□□ 1.15
HMGN3-203ENST00000620514 HYPKQ9NX55 129 aa22.26■■□□□ 1.15
HMGN3-203ENST00000620514 TCERG1O14776 1098 aaKnown RBP22.25■■□□□ 1.15
HMGN3-203ENST00000620514 DDNO94850 711 aaPredicted RBP22.25■■□□□ 1.15
HMGN3-203ENST00000620514 HCLS1P14317 486 aaPredicted RBP22.25■■□□□ 1.15
HMGN3-203ENST00000620514 TRMT112Q9UI30 125 aaKnown RBP22.25■■□□□ 1.15
HMGN3-203ENST00000620514 WDR90Q96KV7 1748 aa22.24■■□□□ 1.15
HMGN3-203ENST00000620514 RNF123Q5XPI4 1314 aa22.24■■□□□ 1.15
HMGN3-203ENST00000620514 ATP5J2-PTCD1G3V325 749 aa22.23■■□□□ 1.15
HMGN3-203ENST00000620514 PPEF1O14829 653 aaPredicted RBP22.23■■□□□ 1.15
HMGN3-203ENST00000620514 TSPYL6Q8N831 410 aa22.23■■□□□ 1.15
HMGN3-203ENST00000620514 TSR2Q969E8 191 aaKnown RBP22.23■■□□□ 1.15
HMGN3-203ENST00000620514 ISCA1Q9BUE6 129 aa22.23■■□□□ 1.15
HMGN3-203ENST00000620514 PHAXQ9H814 394 aaKnown RBP22.23■■□□□ 1.15
HMGN3-203ENST00000620514 IARSP41252 1262 aaKnown RBP22.22■■□□□ 1.15
HMGN3-203ENST00000620514 FSTL1Q12841 308 aa22.22■■□□□ 1.15
HMGN3-203ENST00000620514 CCDC27Q2M243 656 aa22.22■■□□□ 1.15
HMGN3-203ENST00000620514 WWC1Q8IX03 1113 aa22.22■■□□□ 1.15
HMGN3-203ENST00000620514 SH3TC1Q8TE82 1336 aa22.22■■□□□ 1.15
HMGN3-203ENST00000620514 CEP350Q5VT06 3117 aa22.22■■□□□ 1.15
HMGN3-203ENST00000620514 LAMB2P55268 1798 aa22.21■■□□□ 1.15
HMGN3-203ENST00000620514 APLP1P51693 650 aa22.21■■□□□ 1.15
HMGN3-203ENST00000620514 CC2D2BQ6DHV5 1058 aa22.21■■□□□ 1.15
HMGN3-203ENST00000620514 PSMD1Q99460 953 aa22.21■■□□□ 1.15
HMGN3-203ENST00000620514 ABCC4O15439 1325 aa22.21■■□□□ 1.15
HMGN3-203ENST00000620514 ZNF541Q9H0D2 1346 aa22.21■■□□□ 1.15
HMGN3-203ENST00000620514 SMC1BQ8NDV3 1235 aa22.2■■□□□ 1.14
HMGN3-203ENST00000620514 FAM89AQ96GI7 184 aa22.19■■□□□ 1.14
HMGN3-203ENST00000620514 HTRA3P83110 453 aa22.18■■□□□ 1.14
HMGN3-203ENST00000620514 GOLGA2Q08379 1002 aa22.18■■□□□ 1.14
HMGN3-203ENST00000620514 RIC3Q7Z5B4 369 aa22.18■■□□□ 1.14
HMGN3-203ENST00000620514 SALL2Q9Y467 1007 aaPredicted RBP22.18■■□□□ 1.14
HMGN3-203ENST00000620514 COL4A5P29400 1685 aa22.17■■□□□ 1.14
HMGN3-203ENST00000620514 RTL5Q5HYW3 569 aaPredicted RBP22.17■■□□□ 1.14
HMGN3-203ENST00000620514 CCDC30Q5VVM6 783 aa22.17■■□□□ 1.14
HMGN3-203ENST00000620514 ATP6V0A2Q9Y487 856 aa22.17■■□□□ 1.14
HMGN3-203ENST00000620514 DDX60Q8IY21 1712 aaKnown RBP22.16■■□□□ 1.14
HMGN3-203ENST00000620514 FZD9O00144 591 aa22.15■■□□□ 1.14
HMGN3-203ENST00000620514 TRIM28Q13263 835 aaKnown RBP22.15■■□□□ 1.14
HMGN3-203ENST00000620514 DDX46Q7L014 1031 aaKnown RBP22.15■■□□□ 1.14
HMGN3-203ENST00000620514 L3MBTL3Q96JM7 780 aaPredicted RBP22.15■■□□□ 1.14
HMGN3-203ENST00000620514 MYD88Q99836 296 aa22.15■■□□□ 1.14
HMGN3-203ENST00000620514 IL16Q14005 1332 aa22.14■■□□□ 1.14
HMGN3-203ENST00000620514 POTEIP0CG38 1075 aa22.14■■□□□ 1.13
HMGN3-203ENST00000620514 POTEJP0CG39 1038 aa22.14■■□□□ 1.13
HMGN3-203ENST00000620514 GRIPAP1Q4V328 841 aa22.14■■□□□ 1.13
HMGN3-203ENST00000620514 NCBP3Q53F19 620 aaKnown RBP22.14■■□□□ 1.13
HMGN3-203ENST00000620514 TAF1P21675 1872 aa22.13■■□□□ 1.13
HMGN3-203ENST00000620514 BBOX1O75936 387 aa22.13■■□□□ 1.13
HMGN3-203ENST00000620514 GRAPQ13588 217 aa22.13■■□□□ 1.13
HMGN3-203ENST00000620514 LARGE2Q8N3Y3 721 aa22.13■■□□□ 1.13
HMGN3-203ENST00000620514 DNAJC5GQ8N7S2 189 aa22.13■■□□□ 1.13
HMGN3-203ENST00000620514 GRAPLQ8TC17 118 aaPredicted RBP22.13■■□□□ 1.13
HMGN3-203ENST00000620514 JDP2Q8WYK2 163 aa22.13■■□□□ 1.13
HMGN3-203ENST00000620514 TWISTNBQ3B726 338 aaPredicted RBP22.12■■□□□ 1.13
HMGN3-203ENST00000620514 SP8Q8IXZ3 490 aa22.12■■□□□ 1.13
HMGN3-203ENST00000620514 FAM9BQ8IZU0 186 aa22.12■■□□□ 1.13
HMGN3-203ENST00000620514 TMX4Q9H1E5 349 aaPredicted RBP22.12■■□□□ 1.13
HMGN3-203ENST00000620514 IRS4O14654 1257 aaPredicted RBP22.11■■□□□ 1.13
HMGN3-203ENST00000620514 SF3B3Q15393 1217 aaKnown RBP22.11■■□□□ 1.13
HMGN3-203ENST00000620514 CHMP4AQ9BY43 222 aa22.11■■□□□ 1.13
HMGN3-203ENST00000620514 TAF1DQ9H5J8 278 aaPredicted RBP22.11■■□□□ 1.13
HMGN3-203ENST00000620514 FANCIQ9NVI1 1328 aa22.1■■□□□ 1.13
HMGN3-203ENST00000620514 IQCA1LA6NCM1 817 aa22.1■■□□□ 1.13
HMGN3-203ENST00000620514 PPIP5K2O43314 1243 aa22.1■■□□□ 1.13
HMGN3-203ENST00000620514 AOC3Q16853 763 aa22.1■■□□□ 1.13
HMGN3-203ENST00000620514 ZBTB38Q8NAP3 1195 aaPredicted RBP22.1■■□□□ 1.13
HMGN3-203ENST00000620514 JARID2Q92833 1246 aaPredicted RBP22.1■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms