RNA–Protein interactions for RNA: ENST00000607805.5

NECAB3-222, Transcript of N-terminal EF-hand calcium binding protein 3, human

TSL 5

Gene NECAB3, Length 969 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NECAB3-222	ENST00000607805	CC2D2B	Q6DHV5	1058 aa		27.8	■■■□□ 2.04
NECAB3-222	ENST00000607805	KIF6	Q6ZMV9	814 aa		27.8	■■■□□ 2.04
NECAB3-222	ENST00000607805	ERBB4	Q15303	1308 aa		27.8	■■■□□ 2.04
NECAB3-222	ENST00000607805	TRPM7	Q96QT4	1865 aa		27.79	■■■□□ 2.04
NECAB3-222	ENST00000607805	MYL6B	P14649	208 aa		27.79	■■■□□ 2.04
NECAB3-222	ENST00000607805	EPHX2	P34913	555 aa		27.79	■■■□□ 2.04
NECAB3-222	ENST00000607805	GPC2	Q8N158	579 aa		27.79	■■■□□ 2.04
NECAB3-222	ENST00000607805	RNF123	Q5XPI4	1314 aa		27.78	■■■□□ 2.04
NECAB3-222	ENST00000607805	NTSR2	O95665	410 aa		27.78	■■■□□ 2.04
NECAB3-222	ENST00000607805	GPT	P24298	496 aa		27.78	■■■□□ 2.04
NECAB3-222	ENST00000607805	GIGYF2	Q6Y7W6	1299 aa	Known RBP	27.78	■■■□□ 2.04
NECAB3-222	ENST00000607805	ZBTB3	Q9H5J0	574 aa		27.78	■■■□□ 2.04
NECAB3-222	ENST00000607805	PDIA6	Q15084	440 aa		27.77	■■■□□ 2.04
NECAB3-222	ENST00000607805	EAPP	Q56P03	285 aa	Predicted RBP	27.77	■■■□□ 2.04
NECAB3-222	ENST00000607805	CRAMP1	Q96RY5	1269 aa		27.77	■■■□□ 2.04
NECAB3-222	ENST00000607805	SLC51A	Q86UW1	340 aa		27.76	■■■□□ 2.03
NECAB3-222	ENST00000607805	TAF1	P21675	1872 aa		27.75	■■■□□ 2.03
NECAB3-222	ENST00000607805	TMEM88B	A6NKF7	163 aa		27.75	■■■□□ 2.03
NECAB3-222	ENST00000607805	GRIPAP1	Q4V328	841 aa		27.75	■■■□□ 2.03
NECAB3-222	ENST00000607805	C3orf67	Q6ZVT6	689 aa		27.75	■■■□□ 2.03
NECAB3-222	ENST00000607805	PNMA8A	Q86V59	439 aa	Predicted RBP	27.75	■■■□□ 2.03
NECAB3-222	ENST00000607805	PNN	Q9H307	717 aa	Known RBP	27.75	■■■□□ 2.03
NECAB3-222	ENST00000607805	JDP2	Q8WYK2	163 aa		27.74	■■■□□ 2.03
NECAB3-222	ENST00000607805	RPGR	Q92834	1020 aa	Known RBP	27.74	■■■□□ 2.03
NECAB3-222	ENST00000607805	MAPK8IP3	Q9UPT6	1336 aa		27.73	■■■□□ 2.03
NECAB3-222	ENST00000607805	VEGFB	P49765	207 aa		27.72	■■■□□ 2.03
NECAB3-222	ENST00000607805	RBM17	Q96I25	401 aa	Known RBP	27.72	■■■□□ 2.03
NECAB3-222	ENST00000607805	CAPN15	O75808	1086 aa		27.71	■■■□□ 2.03
NECAB3-222	ENST00000607805	PARP10	Q53GL7	1025 aa		27.71	■■■□□ 2.03
NECAB3-222	ENST00000607805	SLC10A5	Q5PT55	438 aa		27.71	■■■□□ 2.03
NECAB3-222	ENST00000607805	CNTROB	Q8N137	903 aa		27.71	■■■□□ 2.03
NECAB3-222	ENST00000607805	BABAM1	Q9NWV8	329 aa		27.71	■■■□□ 2.03
NECAB3-222	ENST00000607805	TSPYL4	Q9UJ04	414 aa		27.71	■■■□□ 2.03
NECAB3-222	ENST00000607805	CLEC11A	Q9Y240	323 aa		27.71	■■■□□ 2.03
NECAB3-222	ENST00000607805	FOXN1	O15353	648 aa		27.7	■■■□□ 2.02
NECAB3-222	ENST00000607805	MAP1S	Q66K74	1059 aa	Predicted RBP	27.7	■■■□□ 2.02
NECAB3-222	ENST00000607805	PPP1R42	Q7Z4L9	355 aa		27.7	■■■□□ 2.02
NECAB3-222	ENST00000607805	PPEF1	O14829	653 aa	Predicted RBP	27.69	■■■□□ 2.02
NECAB3-222	ENST00000607805	EIF6	P56537	245 aa	Known RBP	27.69	■■■□□ 2.02
NECAB3-222	ENST00000607805	PROSER3	Q2NL68	480 aa		27.69	■■■□□ 2.02
NECAB3-222	ENST00000607805	RASSF10	A6NK89	507 aa		27.68	■■■□□ 2.02
NECAB3-222	ENST00000607805	SCNN1D	P51172	638 aa		27.68	■■■□□ 2.02
NECAB3-222	ENST00000607805	RIPK4	P57078	832 aa		27.68	■■■□□ 2.02
NECAB3-222	ENST00000607805	LARGE2	Q8N3Y3	721 aa		27.67	■■■□□ 2.02
NECAB3-222	ENST00000607805	NLRP3	Q96P20	1036 aa		27.66	■■■□□ 2.02
NECAB3-222	ENST00000607805	GJA3	Q9Y6H8	435 aa		27.66	■■■□□ 2.02
NECAB3-222	ENST00000607805	THSD7B	Q9C0I4	1608 aa		27.66	■■■□□ 2.02
NECAB3-222	ENST00000607805	DDX60	Q8IY21	1712 aa	Known RBP	27.65	■■■□□ 2.02
NECAB3-222	ENST00000607805	ANXA1	P04083	346 aa		27.65	■■■□□ 2.02
NECAB3-222	ENST00000607805	EIF2S2	P20042	333 aa	Known RBP	27.65	■■■□□ 2.02
NECAB3-222	ENST00000607805	EPS15	P42566	896 aa		27.65	■■■□□ 2.02
NECAB3-222	ENST00000607805	UTP14A	Q9BVJ6	771 aa	Known RBP	27.65	■■■□□ 2.02
NECAB3-222	ENST00000607805	PRDM10	Q9NQV6	1147 aa		27.65	■■■□□ 2.02
NECAB3-222	ENST00000607805	WBP1L	Q9NX94	342 aa		27.65	■■■□□ 2.02
NECAB3-222	ENST00000607805	ATP6V0A2	Q9Y487	856 aa		27.65	■■■□□ 2.02
NECAB3-222	ENST00000607805	TMPO	P42166	694 aa	Known RBP	27.64	■■■□□ 2.02
NECAB3-222	ENST00000607805	VPS33B	Q9H267	617 aa		27.64	■■■□□ 2.02
NECAB3-222	ENST00000607805	ABCC4	O15439	1325 aa		27.64	■■■□□ 2.01
NECAB3-222	ENST00000607805	TCERG1	O14776	1098 aa	Known RBP	27.63	■■■□□ 2.01
NECAB3-222	ENST00000607805	RTFDC1	Q9BY42	306 aa	Predicted RBP	27.63	■■■□□ 2.01
NECAB3-222	ENST00000607805	LRRC37A	A6NMS7	1700 aa		27.63	■■■□□ 2.01
NECAB3-222	ENST00000607805	RALBP1	Q15311	655 aa		27.62	■■■□□ 2.01
NECAB3-222	ENST00000607805	DEFB115	Q30KQ5	88 aa		27.62	■■■□□ 2.01
NECAB3-222	ENST00000607805	DDX21	Q9NR30	783 aa	Known RBP eCLIP	27.62	■■■□□ 2.01
NECAB3-222	ENST00000607805	LMOD1	P29536	600 aa	Predicted RBP	27.61	■■■□□ 2.01
NECAB3-222	ENST00000607805	PPIP5K2	O43314	1243 aa		27.6	■■■□□ 2.01
NECAB3-222	ENST00000607805	CTCF	P49711	727 aa	Predicted RBP	27.6	■■■□□ 2.01
NECAB3-222	ENST00000607805	AOC3	Q16853	763 aa		27.6	■■■□□ 2.01
NECAB3-222	ENST00000607805	USP50	Q70EL3	339 aa	Predicted RBP	27.6	■■■□□ 2.01
NECAB3-222	ENST00000607805	COPS6	Q7L5N1	327 aa		27.6	■■■□□ 2.01
NECAB3-222	ENST00000607805	NLRP10	Q86W26	655 aa		27.6	■■■□□ 2.01
NECAB3-222	ENST00000607805	NIM1K	Q8IY84	436 aa		27.6	■■■□□ 2.01
NECAB3-222	ENST00000607805	POLR2A	P24928	1970 aa	Known RBP	27.6	■■■□□ 2.01
NECAB3-222	ENST00000607805	DUOX1	Q9NRD9	1551 aa		27.58	■■■□□ 2.01
NECAB3-222	ENST00000607805	CHL1	O00533	1208 aa		27.58	■■■□□ 2.01
NECAB3-222	ENST00000607805	BBOX1	O75936	387 aa		27.58	■■■□□ 2.01
NECAB3-222	ENST00000607805	FMR1	Q06787	632 aa	Known RBP eCLIP	27.58	■■■□□ 2.01
NECAB3-222	ENST00000607805	LMOD3	Q0VAK6	560 aa		27.58	■■■□□ 2.01
NECAB3-222	ENST00000607805	HSP90AB3P	Q58FF7	597 aa		27.58	■■■□□ 2.01
NECAB3-222	ENST00000607805	SP8	Q8IXZ3	490 aa		27.58	■■■□□ 2.01
NECAB3-222	ENST00000607805	XAGE3	Q8WTP9	111 aa		27.58	■■■□□ 2.01
NECAB3-222	ENST00000607805	WDR33	Q9C0J8	1336 aa	Known RBP	27.58	■■■□□ 2.01
NECAB3-222	ENST00000607805	TCIRG1	Q13488	830 aa		27.57	■■■□□ 2
NECAB3-222	ENST00000607805	HCLS1	P14317	486 aa	Predicted RBP	27.56	■■■□□ 2
NECAB3-222	ENST00000607805	CXCL9	Q07325	125 aa		27.56	■■■□□ 2
NECAB3-222	ENST00000607805	AIDA	Q96BJ3	306 aa		27.56	■■■□□ 2
NECAB3-222	ENST00000607805	GPRC5D	Q9NZD1	345 aa		27.56	■■■□□ 2
NECAB3-222	ENST00000607805	ZNRF3	Q9ULT6	936 aa		27.56	■■■□□ 2
NECAB3-222	ENST00000607805	KRT24	Q2M2I5	525 aa		27.55	■■■□□ 2
NECAB3-222	ENST00000607805	CST9	Q5W186	159 aa		27.55	■■■□□ 2
NECAB3-222	ENST00000607805	SUPT20H	Q8NEM7	779 aa		27.55	■■■□□ 2
NECAB3-222	ENST00000607805	NECTIN2	Q92692	538 aa		27.55	■■■□□ 2
NECAB3-222	ENST00000607805	AIMP1	Q12904	312 aa	Known RBP	27.54	■■■□□ 2
NECAB3-222	ENST00000607805	ABT1	Q9ULW3	272 aa	Known RBP	27.54	■■■□□ 2
NECAB3-222	ENST00000607805	TRIM35	Q9UPQ4	493 aa		27.54	■■■□□ 2
NECAB3-222	ENST00000607805	KIAA2012	Q0VF49	1180 aa		27.53	■■■□□ 2
NECAB3-222	ENST00000607805	TMX4	Q9H1E5	349 aa	Predicted RBP	27.53	■■■□□ 2
NECAB3-222	ENST00000607805	ADARB2	Q9NS39	739 aa	Known RBP	27.53	■■■□□ 2
NECAB3-222	ENST00000607805	SH3TC1	Q8TE82	1336 aa		27.52	■■■□□ 2
NECAB3-222	ENST00000607805	HSPA8	P11142	646 aa	Known RBP	27.52	■■■□□ 2

Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms