RNA–Protein interactions for RNA: ENST00000602140.1

RPS28-204, Transcript of ribosomal protein S28, humanhuman

TSL 1 (best)

Gene RPS28, Length 912 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-204ENST00000602140 BABAM1Q9NWV8 329 aa17.27■□□□□ 0.36
RPS28-204ENST00000602140 RIC1Q4ADV7 1423 aa17.27■□□□□ 0.35
RPS28-204ENST00000602140 MYBBP1AQ9BQG0 1328 aaKnown RBP17.26■□□□□ 0.35
RPS28-204ENST00000602140 HOXA10P31260 410 aaPredicted RBP17.26■□□□□ 0.35
RPS28-204ENST00000602140 PPP1R42Q7Z4L9 355 aa17.26■□□□□ 0.35
RPS28-204ENST00000602140 NECTIN2Q92692 538 aa17.26■□□□□ 0.35
RPS28-204ENST00000602140 PSMD1Q99460 953 aa17.26■□□□□ 0.35
RPS28-204ENST00000602140 SNED1Q8TER0 1413 aa17.26■□□□□ 0.35
RPS28-204ENST00000602140 FZD9O00144 591 aa17.25■□□□□ 0.35
RPS28-204ENST00000602140 PARP10Q53GL7 1025 aa17.25■□□□□ 0.35
RPS28-204ENST00000602140 CC2D2BQ6DHV5 1058 aa17.25■□□□□ 0.35
RPS28-204ENST00000602140 LDHDQ86WU2 507 aa17.25■□□□□ 0.35
RPS28-204ENST00000602140 RBM17Q96I25 401 aaKnown RBP17.25■□□□□ 0.35
RPS28-204ENST00000602140 SCN4AP35499 1836 aa17.24■□□□□ 0.35
RPS28-204ENST00000602140 EAPPQ56P03 285 aaPredicted RBP17.24■□□□□ 0.35
RPS28-204ENST00000602140 C3orf67Q6ZVT6 689 aa17.24■□□□□ 0.35
RPS28-204ENST00000602140 JDP2Q8WYK2 163 aa17.24■□□□□ 0.35
RPS28-204ENST00000602140 CRAMP1Q96RY5 1269 aa17.24■□□□□ 0.35
RPS28-204ENST00000602140 HACL1Q9UJ83 578 aa17.24■□□□□ 0.35
RPS28-204ENST00000602140 TCERG1O14776 1098 aaKnown RBP17.23■□□□□ 0.35
RPS28-204ENST00000602140 PPEF1O14829 653 aaPredicted RBP17.23■□□□□ 0.35
RPS28-204ENST00000602140 AIMP1Q12904 312 aaKnown RBP17.23■□□□□ 0.35
RPS28-204ENST00000602140 COL13A1Q5TAT6 717 aaPredicted RBP17.23■□□□□ 0.35
RPS28-204ENST00000602140 COPS6Q7L5N1 327 aa17.23■□□□□ 0.35
RPS28-204ENST00000602140 SLC51AQ86UW1 340 aa17.23■□□□□ 0.35
RPS28-204ENST00000602140 NLRP3Q96P20 1036 aa17.23■□□□□ 0.35
RPS28-204ENST00000602140 UTP14AQ9BVJ6 771 aaKnown RBP17.23■□□□□ 0.35
RPS28-204ENST00000602140 CREBZFQ9NS37 354 aa17.23■□□□□ 0.35
RPS28-204ENST00000602140 RNF123Q5XPI4 1314 aa17.22■□□□□ 0.35
RPS28-204ENST00000602140 EPHX2P34913 555 aa17.22■□□□□ 0.35
RPS28-204ENST00000602140 WDR43Q15061 677 aaKnown RBP eCLIP17.22■□□□□ 0.35
RPS28-204ENST00000602140 KRT24Q2M2I5 525 aa17.22■□□□□ 0.35
RPS28-204ENST00000602140 GPC2Q8N158 579 aa17.22■□□□□ 0.35
RPS28-204ENST00000602140 XAGE3Q8WTP9 111 aa17.22■□□□□ 0.35
RPS28-204ENST00000602140 RUNDC1Q96C34 613 aa17.22■□□□□ 0.35
RPS28-204ENST00000602140 CLEC11AQ9Y240 323 aa17.22■□□□□ 0.35
RPS28-204ENST00000602140 LAS1LQ9Y4W2 734 aaKnown RBP17.22■□□□□ 0.35
RPS28-204ENST00000602140 CHL1O00533 1208 aa17.21■□□□□ 0.35
RPS28-204ENST00000602140 HSPA1AP0DMV8 641 aaKnown RBP17.21■□□□□ 0.35
RPS28-204ENST00000602140 HSPA1BP0DMV9 641 aaKnown RBP17.21■□□□□ 0.35
RPS28-204ENST00000602140 GRIPAP1Q4V328 841 aa17.21■□□□□ 0.35
RPS28-204ENST00000602140 SLC10A5Q5PT55 438 aa17.21■□□□□ 0.35
RPS28-204ENST00000602140 MKRN1Q9UHC7 482 aaKnown RBP17.21■□□□□ 0.35
RPS28-204ENST00000602140 TRIM35Q9UPQ4 493 aa17.21■□□□□ 0.35
RPS28-204ENST00000602140 PASKQ96RG2 1323 aa17.21■□□□□ 0.34
RPS28-204ENST00000602140 COL4A5P29400 1685 aa17.2■□□□□ 0.34
RPS28-204ENST00000602140 EIF6P56537 245 aaKnown RBP17.2■□□□□ 0.34
RPS28-204ENST00000602140 HSP90AB3PQ58FF7 597 aa17.2■□□□□ 0.34
RPS28-204ENST00000602140 LARGE2Q8N3Y3 721 aa17.2■□□□□ 0.34
RPS28-204ENST00000602140 DDX21Q9NR30 783 aaKnown RBP eCLIP17.2■□□□□ 0.34
RPS28-204ENST00000602140 ADAMTS8Q9UP79 889 aa17.2■□□□□ 0.34
RPS28-204ENST00000602140 GJA3Q9Y6H8 435 aa17.2■□□□□ 0.34
RPS28-204ENST00000602140 ITGBL1O95965 494 aaPredicted RBP17.19■□□□□ 0.34
RPS28-204ENST00000602140 PNMA8AQ86V59 439 aaPredicted RBP17.19■□□□□ 0.34
RPS28-204ENST00000602140 NLRP10Q86W26 655 aa17.19■□□□□ 0.34
RPS28-204ENST00000602140 HCLS1P14317 486 aaPredicted RBP17.18■□□□□ 0.34
RPS28-204ENST00000602140 TCIRG1Q13488 830 aa17.18■□□□□ 0.34
RPS28-204ENST00000602140 TMX4Q9H1E5 349 aaPredicted RBP17.18■□□□□ 0.34
RPS28-204ENST00000602140 CHPF2Q9P2E5 772 aa17.18■□□□□ 0.34
RPS28-204ENST00000602140 ATP6V0A2Q9Y487 856 aa17.18■□□□□ 0.34
RPS28-204ENST00000602140 ABCC4O15439 1325 aa17.18■□□□□ 0.34
RPS28-204ENST00000602140 TRMT112Q9UI30 125 aaKnown RBP17.17■□□□□ 0.34
RPS28-204ENST00000602140 ADAMTSL1Q8N6G6 1762 aa17.17■□□□□ 0.34
RPS28-204ENST00000602140 ANKRD36CQ5JPF3 1778 aa17.16■□□□□ 0.34
RPS28-204ENST00000602140 TMEM88BA6NKF7 163 aa17.16■□□□□ 0.34
RPS28-204ENST00000602140 PPIP5K2O43314 1243 aa17.16■□□□□ 0.34
RPS28-204ENST00000602140 HDGFL1Q5TGJ6 251 aa17.16■□□□□ 0.34
RPS28-204ENST00000602140 MAP1SQ66K74 1059 aaPredicted RBP17.16■□□□□ 0.34
RPS28-204ENST00000602140 NIM1KQ8IY84 436 aa17.16■□□□□ 0.34
RPS28-204ENST00000602140 CNTROBQ8N137 903 aa17.16■□□□□ 0.34
RPS28-204ENST00000602140 ZNF428Q96B54 188 aa17.16■□□□□ 0.34
RPS28-204ENST00000602140 CNTNAP1P78357 1384 aa17.15■□□□□ 0.34
RPS28-204ENST00000602140 LMOD1P29536 600 aaPredicted RBP17.15■□□□□ 0.34
RPS28-204ENST00000602140 AOC3Q16853 763 aa17.15■□□□□ 0.34
RPS28-204ENST00000602140 SH3TC1Q8TE82 1336 aa17.15■□□□□ 0.34
RPS28-204ENST00000602140 BBOX1O75936 387 aa17.14■□□□□ 0.33
RPS28-204ENST00000602140 EPS15P42566 896 aa17.14■□□□□ 0.33
RPS28-204ENST00000602140 SCNN1DP51172 638 aa17.14■□□□□ 0.33
RPS28-204ENST00000602140 DDX46Q7L014 1031 aaKnown RBP17.14■□□□□ 0.33
RPS28-204ENST00000602140 TNS4Q8IZW8 715 aa17.14■□□□□ 0.33
RPS28-204ENST00000602140 PLBD2Q8NHP8 589 aa17.14■□□□□ 0.33
RPS28-204ENST00000602140 CFAP44Q96MT7 982 aa17.14■□□□□ 0.33
RPS28-204ENST00000602140 PRKRIP1Q9H875 184 aaPredicted RBP17.14■□□□□ 0.33
RPS28-204ENST00000602140 LTBP1Q14766 1721 aa17.13■□□□□ 0.33
RPS28-204ENST00000602140 HOXB7P09629 217 aa17.13■□□□□ 0.33
RPS28-204ENST00000602140 ANKRD13DQ6ZTN6 518 aa17.13■□□□□ 0.33
RPS28-204ENST00000602140 SP8Q8IXZ3 490 aa17.13■□□□□ 0.33
RPS28-204ENST00000602140 SUPT20HQ8NEM7 779 aa17.13■□□□□ 0.33
RPS28-204ENST00000602140 RTFDC1Q9BY42 306 aaPredicted RBP17.13■□□□□ 0.33
RPS28-204ENST00000602140 VPS33BQ9H267 617 aa17.13■□□□□ 0.33
RPS28-204ENST00000602140 DBF4Q9UBU7 674 aaPredicted RBP17.13■□□□□ 0.33
RPS28-204ENST00000602140 LAMB2P55268 1798 aa17.12■□□□□ 0.33
RPS28-204ENST00000602140 GRAPQ13588 217 aa17.12■□□□□ 0.33
RPS28-204ENST00000602140 DUSP27Q5VZP5 1158 aa17.12■□□□□ 0.33
RPS28-204ENST00000602140 DPP8Q6V1X1 898 aaPredicted RBP17.12■□□□□ 0.33
RPS28-204ENST00000602140 MPNDQ8N594 471 aa17.12■□□□□ 0.33
RPS28-204ENST00000602140 GRAPLQ8TC17 118 aaPredicted RBP17.12■□□□□ 0.33
RPS28-204ENST00000602140 ATP5J2-PTCD1G3V325 749 aa17.11■□□□□ 0.33
RPS28-204ENST00000602140 VEGFBP49765 207 aa17.11■□□□□ 0.33
RPS28-204ENST00000602140 ISCA1Q9BUE6 129 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms