RNA–Protein interactions for RNA: ENST00000601912.5

VRK3-225, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,668 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-225ENST00000601912 PLSCR1O15162 318 aa22.32■■□□□ 1.16
VRK3-225ENST00000601912 SURF6O75683 361 aaKnown RBP22.32■■□□□ 1.16
VRK3-225ENST00000601912 CLEC4GQ6UXB4 293 aa22.32■■□□□ 1.16
VRK3-225ENST00000601912 APBB1O00213 710 aa22.31■■□□□ 1.16
VRK3-225ENST00000601912 APBA3O96018 575 aa22.31■■□□□ 1.16
VRK3-225ENST00000601912 RTL5Q5HYW3 569 aaPredicted RBP22.31■■□□□ 1.16
VRK3-225ENST00000601912 ANKRD36CQ5JPF3 1778 aa22.31■■□□□ 1.16
VRK3-225ENST00000601912 RAB11FIP3O75154 756 aa22.3■■□□□ 1.16
VRK3-225ENST00000601912 RABL6Q3YEC7 729 aaPredicted RBP22.3■■□□□ 1.16
VRK3-225ENST00000601912 EPHA10Q5JZY3 1008 aa22.3■■□□□ 1.16
VRK3-225ENST00000601912 C4BP0C0L5 1744 aa22.3■■□□□ 1.16
VRK3-225ENST00000601912 EP400Q96L91 3159 aa22.3■■□□□ 1.16
VRK3-225ENST00000601912 PDE4AP27815 886 aa22.3■■□□□ 1.16
VRK3-225ENST00000601912 TXNRD1Q16881 649 aa22.3■■□□□ 1.16
VRK3-225ENST00000601912 PARP10Q53GL7 1025 aa22.3■■□□□ 1.16
VRK3-225ENST00000601912 LRRCC1Q9C099 1032 aa22.3■■□□□ 1.16
VRK3-225ENST00000601912 ZPR1O75312 459 aa22.29■■□□□ 1.16
VRK3-225ENST00000601912 NARFQ9UHQ1 456 aa22.29■■□□□ 1.16
VRK3-225ENST00000601912 TRMT112Q9UI30 125 aaKnown RBP22.29■■□□□ 1.16
VRK3-225ENST00000601912 TRAPPC3LQ5T215 181 aa22.28■■□□□ 1.16
VRK3-225ENST00000601912 FAM89AQ96GI7 184 aa22.28■■□□□ 1.16
VRK3-225ENST00000601912 NOP58Q9Y2X3 529 aaKnown RBP22.28■■□□□ 1.16
VRK3-225ENST00000601912 CDHR2Q9BYE9 1310 aa22.27■■□□□ 1.16
VRK3-225ENST00000601912 FOXO4P98177 505 aa22.27■■□□□ 1.16
VRK3-225ENST00000601912 NIP7Q9Y221 180 aaKnown RBP eCLIP22.27■■□□□ 1.16
VRK3-225ENST00000601912 UBN2Q6ZU65 1347 aa22.27■■□□□ 1.16
VRK3-225ENST00000601912 ADRA2BP18089 450 aa22.26■■□□□ 1.15
VRK3-225ENST00000601912 OS9Q13438 667 aaPredicted RBP22.26■■□□□ 1.15
VRK3-225ENST00000601912 LMBR1LQ6UX01 489 aa22.26■■□□□ 1.15
VRK3-225ENST00000601912 RFC4P35249 363 aa22.26■■□□□ 1.15
VRK3-225ENST00000601912 ARHGEF1Q92888 912 aaKnown RBP22.26■■□□□ 1.15
VRK3-225ENST00000601912 UTP14AQ9BVJ6 771 aaKnown RBP22.26■■□□□ 1.15
VRK3-225ENST00000601912 PLA2G12BQ9BX93 195 aa22.26■■□□□ 1.15
VRK3-225ENST00000601912 SMARCA5O60264 1052 aaPredicted RBP22.25■■□□□ 1.15
VRK3-225ENST00000601912 ERC1Q8IUD2 1116 aa22.25■■□□□ 1.15
VRK3-225ENST00000601912 PROM2Q8N271 834 aa22.25■■□□□ 1.15
VRK3-225ENST00000601912 KIF1BPQ96EK5 621 aa22.25■■□□□ 1.15
VRK3-225ENST00000601912 CHMP3Q9Y3E7 222 aa22.25■■□□□ 1.15
VRK3-225ENST00000601912 BCORQ6W2J9 1755 aa22.25■■□□□ 1.15
VRK3-225ENST00000601912 G3BP1Q13283 466 aaKnown RBP eCLIP22.24■■□□□ 1.15
VRK3-225ENST00000601912 USPL1Q5W0Q7 1092 aa22.24■■□□□ 1.15
VRK3-225ENST00000601912 BCL11AQ9H165 835 aa22.24■■□□□ 1.15
VRK3-225ENST00000601912 PHF14O94880 888 aa22.23■■□□□ 1.15
VRK3-225ENST00000601912 HSP90B1P14625 803 aaKnown RBP22.23■■□□□ 1.15
VRK3-225ENST00000601912 SUSD4Q5VX71 490 aa22.23■■□□□ 1.15
VRK3-225ENST00000601912 PA2G4Q9UQ80 394 aaKnown RBP22.23■■□□□ 1.15
VRK3-225ENST00000601912 SH3TC1Q8TE82 1336 aa22.23■■□□□ 1.15
VRK3-225ENST00000601912 IRS4O14654 1257 aaPredicted RBP22.23■■□□□ 1.15
VRK3-225ENST00000601912 SMIM5Q71RC9 77 aa22.23■■□□□ 1.15
VRK3-225ENST00000601912 RHPN1Q8TCX5 695 aa22.23■■□□□ 1.15
VRK3-225ENST00000601912 COPRSQ9NQ92 184 aa22.23■■□□□ 1.15
VRK3-225ENST00000601912 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.21■■□□□ 1.15
VRK3-225ENST00000601912 SSFA2P28290 1259 aa22.21■■□□□ 1.15
VRK3-225ENST00000601912 AMIGO3Q86WK7 504 aa22.21■■□□□ 1.15
VRK3-225ENST00000601912 TSHZ2Q9NRE2 1034 aa22.21■■□□□ 1.15
VRK3-225ENST00000601912 SRP68Q9UHB9 627 aaKnown RBP22.21■■□□□ 1.15
VRK3-225ENST00000601912 SCN7AQ01118 1682 aa22.21■■□□□ 1.15
VRK3-225ENST00000601912 PDE8AO60658 829 aa22.2■■□□□ 1.15
VRK3-225ENST00000601912 RFX5P48382 616 aaPredicted RBP22.2■■□□□ 1.15
VRK3-225ENST00000601912 FAM161AQ3B820 660 aa22.2■■□□□ 1.15
VRK3-225ENST00000601912 PLEKHM2Q8IWE5 1019 aa22.2■■□□□ 1.15
VRK3-225ENST00000601912 C16orf71Q8IYS4 520 aaPredicted RBP22.2■■□□□ 1.15
VRK3-225ENST00000601912 BCL2L12Q9HB09 334 aa22.2■■□□□ 1.15
VRK3-225ENST00000601912 USP42Q9H9J4 1324 aaKnown RBP22.2■■□□□ 1.14
VRK3-225ENST00000601912 FAM177BA6PVY3 158 aa22.2■■□□□ 1.14
VRK3-225ENST00000601912 PTPN12Q05209 780 aaKnown RBP22.2■■□□□ 1.14
VRK3-225ENST00000601912 SYNE4Q8N205 404 aa22.2■■□□□ 1.14
VRK3-225ENST00000601912 SETDB2Q96T68 719 aa22.2■■□□□ 1.14
VRK3-225ENST00000601912 CSF1RP07333 972 aa22.19■■□□□ 1.14
VRK3-225ENST00000601912 CCDC57Q2TAC2 916 aa22.19■■□□□ 1.14
VRK3-225ENST00000601912 SIL1Q9H173 461 aa22.19■■□□□ 1.14
VRK3-225ENST00000601912 TNS1Q9HBL0 1735 aaKnown RBP22.18■■□□□ 1.14
VRK3-225ENST00000601912 NTSR2O95665 410 aa22.18■■□□□ 1.14
VRK3-225ENST00000601912 CTSWP56202 376 aa22.18■■□□□ 1.14
VRK3-225ENST00000601912 TBC1D9BQ66K14 1250 aa22.18■■□□□ 1.14
VRK3-225ENST00000601912 BICDL1Q6ZP65 573 aa22.18■■□□□ 1.14
VRK3-225ENST00000601912 KLHDC4Q8TBB5 520 aa22.18■■□□□ 1.14
VRK3-225ENST00000601912 IL1RAPL2Q9NP60 686 aa22.18■■□□□ 1.14
VRK3-225ENST00000601912 UBR3Q6ZT12 1888 aa22.17■■□□□ 1.14
VRK3-225ENST00000601912 CLASRPQ8N2M8 674 aaKnown RBP22.17■■□□□ 1.14
VRK3-225ENST00000601912 IFIT5Q13325 482 aaKnown RBP22.17■■□□□ 1.14
VRK3-225ENST00000601912 TTLL11Q8NHH1 800 aa22.17■■□□□ 1.14
VRK3-225ENST00000601912 BACH2Q9BYV9 841 aa22.17■■□□□ 1.14
VRK3-225ENST00000601912 NYXQ9GZU5 481 aa22.17■■□□□ 1.14
VRK3-225ENST00000601912 SF3B2Q13435 895 aaKnown RBP22.16■■□□□ 1.14
VRK3-225ENST00000601912 OTUD7AQ8TE49 926 aaPredicted RBP22.16■■□□□ 1.14
VRK3-225ENST00000601912 TFCP2L1Q9NZI6 479 aa22.16■■□□□ 1.14
VRK3-225ENST00000601912 RGPD3A6NKT7 1758 aaPredicted RBP22.16■■□□□ 1.14
VRK3-225ENST00000601912 RGPD4Q7Z3J3 1758 aa22.16■■□□□ 1.14
VRK3-225ENST00000601912 GTF2E1P29083 439 aaPredicted RBP22.15■■□□□ 1.14
VRK3-225ENST00000601912 BMP2KLQ5H9B9 411 aa22.15■■□□□ 1.14
VRK3-225ENST00000601912 ILDR1Q86SU0 546 aaPredicted RBP22.15■■□□□ 1.14
VRK3-225ENST00000601912 C4AP0C0L4 1744 aa22.15■■□□□ 1.14
VRK3-225ENST00000601912 SASH1O94885 1247 aa22.14■■□□□ 1.14
VRK3-225ENST00000601912 TAF7LQ5H9L4 462 aa22.14■■□□□ 1.14
VRK3-225ENST00000601912 OSBPL3Q9H4L5 887 aa22.14■■□□□ 1.14
VRK3-225ENST00000601912 HCLS1P14317 486 aaPredicted RBP22.14■■□□□ 1.13
VRK3-225ENST00000601912 MX1P20591 662 aa22.14■■□□□ 1.13
VRK3-225ENST00000601912 PDE1AP54750 535 aa22.14■■□□□ 1.13
VRK3-225ENST00000601912 NUTM1Q86Y26 1132 aa22.14■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms