RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 OLFM4Q6UX06 510 aa19.56■□□□□ 0.72
LIG1-215ENST00000597901 NLRP10Q86W26 655 aa19.56■□□□□ 0.72
LIG1-215ENST00000597901 HYPKQ9NX55 129 aa19.56■□□□□ 0.72
LIG1-215ENST00000597901 DLEC1Q9Y238 1755 aa19.56■□□□□ 0.72
LIG1-215ENST00000597901 RTKN2Q8IZC4 609 aa19.55■□□□□ 0.72
LIG1-215ENST00000597901 C8orf58Q8NAV2 365 aa19.55■□□□□ 0.72
LIG1-215ENST00000597901 PLBD2Q8NHP8 589 aa19.55■□□□□ 0.72
LIG1-215ENST00000597901 RPGRQ92834 1020 aaKnown RBP19.55■□□□□ 0.72
LIG1-215ENST00000597901 NLRP3Q96P20 1036 aa19.55■□□□□ 0.72
LIG1-215ENST00000597901 CCDC27Q2M243 656 aa19.54■□□□□ 0.72
LIG1-215ENST00000597901 C3orf67Q6ZVT6 689 aa19.54■□□□□ 0.72
LIG1-215ENST00000597901 RBM17Q96I25 401 aaKnown RBP19.54■□□□□ 0.72
LIG1-215ENST00000597901 CRAMP1Q96RY5 1269 aa19.54■□□□□ 0.72
LIG1-215ENST00000597901 VEGFAP15692 232 aaPredicted RBP19.53■□□□□ 0.72
LIG1-215ENST00000597901 APLP1P51693 650 aa19.53■□□□□ 0.72
LIG1-215ENST00000597901 FKBP4Q02790 459 aaKnown RBP eCLIP19.53■□□□□ 0.72
LIG1-215ENST00000597901 WWC1Q8IX03 1113 aa19.53■□□□□ 0.72
LIG1-215ENST00000597901 SYNE4Q8N205 404 aa19.53■□□□□ 0.72
LIG1-215ENST00000597901 RBM46Q8TBY0 533 aaKnown RBP19.53■□□□□ 0.72
LIG1-215ENST00000597901 TRMT112Q9UI30 125 aaKnown RBP19.53■□□□□ 0.72
LIG1-215ENST00000597901 COL11A2P13942 1736 aaPredicted RBP19.53■□□□□ 0.72
LIG1-215ENST00000597901 SLX4Q8IY92 1834 aa19.53■□□□□ 0.72
LIG1-215ENST00000597901 SBF1O95248 1867 aa19.52■□□□□ 0.71
LIG1-215ENST00000597901 NCBP3Q53F19 620 aaKnown RBP19.51■□□□□ 0.71
LIG1-215ENST00000597901 CC2D2BQ6DHV5 1058 aa19.51■□□□□ 0.71
LIG1-215ENST00000597901 ISCA1Q9BUE6 129 aa19.51■□□□□ 0.71
LIG1-215ENST00000597901 ZNF277Q9NRM2 450 aaPredicted RBP19.51■□□□□ 0.71
LIG1-215ENST00000597901 NUP98P52948 1817 aa19.51■□□□□ 0.71
LIG1-215ENST00000597901 RIC1Q4ADV7 1423 aa19.51■□□□□ 0.71
LIG1-215ENST00000597901 RNF123Q5XPI4 1314 aa19.51■□□□□ 0.71
LIG1-215ENST00000597901 POTECB2RU33 542 aa19.5■□□□□ 0.71
LIG1-215ENST00000597901 HCLS1P14317 486 aaPredicted RBP19.5■□□□□ 0.71
LIG1-215ENST00000597901 PHAXQ9H814 394 aaKnown RBP19.5■□□□□ 0.71
LIG1-215ENST00000597901 ATP5J2-PTCD1G3V325 749 aa19.49■□□□□ 0.71
LIG1-215ENST00000597901 TCERG1O14776 1098 aaKnown RBP19.49■□□□□ 0.71
LIG1-215ENST00000597901 TSPYL6Q8N831 410 aa19.49■□□□□ 0.71
LIG1-215ENST00000597901 ZNF428Q96B54 188 aa19.49■□□□□ 0.71
LIG1-215ENST00000597901 CHMP4AQ9BY43 222 aa19.49■□□□□ 0.71
LIG1-215ENST00000597901 SH3TC1Q8TE82 1336 aa19.49■□□□□ 0.71
LIG1-215ENST00000597901 DDNO94850 711 aaPredicted RBP19.48■□□□□ 0.71
LIG1-215ENST00000597901 FSTL1Q12841 308 aa19.48■□□□□ 0.71
LIG1-215ENST00000597901 TRIM28Q13263 835 aaKnown RBP19.48■□□□□ 0.71
LIG1-215ENST00000597901 CCDC30Q5VVM6 783 aa19.48■□□□□ 0.71
LIG1-215ENST00000597901 RIC3Q7Z5B4 369 aa19.48■□□□□ 0.71
LIG1-215ENST00000597901 TSR2Q969E8 191 aaKnown RBP19.48■□□□□ 0.71
LIG1-215ENST00000597901 GRIPAP1Q4V328 841 aa19.47■□□□□ 0.71
LIG1-215ENST00000597901 PSMD1Q99460 953 aa19.47■□□□□ 0.71
LIG1-215ENST00000597901 SALL2Q9Y467 1007 aaPredicted RBP19.47■□□□□ 0.71
LIG1-215ENST00000597901 PPEF1O14829 653 aaPredicted RBP19.46■□□□□ 0.71
LIG1-215ENST00000597901 BBOX1O75936 387 aa19.46■□□□□ 0.71
LIG1-215ENST00000597901 IARSP41252 1262 aaKnown RBP19.46■□□□□ 0.71
LIG1-215ENST00000597901 FAM89AQ96GI7 184 aa19.46■□□□□ 0.71
LIG1-215ENST00000597901 IL16Q14005 1332 aa19.46■□□□□ 0.71
LIG1-215ENST00000597901 GOLGA2Q08379 1002 aa19.45■□□□□ 0.7
LIG1-215ENST00000597901 SMC1BQ8NDV3 1235 aa19.45■□□□□ 0.7
LIG1-215ENST00000597901 TMX4Q9H1E5 349 aaPredicted RBP19.45■□□□□ 0.7
LIG1-215ENST00000597901 ATP6V0A2Q9Y487 856 aa19.45■□□□□ 0.7
LIG1-215ENST00000597901 FER1L6Q2WGJ9 1857 aa19.45■□□□□ 0.7
LIG1-215ENST00000597901 DDX46Q7L014 1031 aaKnown RBP19.44■□□□□ 0.7
LIG1-215ENST00000597901 SLC51AQ86UW1 340 aa19.44■□□□□ 0.7
LIG1-215ENST00000597901 WDR63Q8IWG1 891 aa19.44■□□□□ 0.7
LIG1-215ENST00000597901 FAM9BQ8IZU0 186 aa19.44■□□□□ 0.7
LIG1-215ENST00000597901 ABCC4O15439 1325 aa19.44■□□□□ 0.7
LIG1-215ENST00000597901 TNRC6CQ9HCJ0 1690 aaKnown RBP19.43■□□□□ 0.7
LIG1-215ENST00000597901 FZD9O00144 591 aa19.43■□□□□ 0.7
LIG1-215ENST00000597901 RTL5Q5HYW3 569 aaPredicted RBP19.43■□□□□ 0.7
LIG1-215ENST00000597901 SP8Q8IXZ3 490 aa19.43■□□□□ 0.7
LIG1-215ENST00000597901 SF3B3Q15393 1217 aaKnown RBP19.42■□□□□ 0.7
LIG1-215ENST00000597901 TWISTNBQ3B726 338 aaPredicted RBP19.42■□□□□ 0.7
LIG1-215ENST00000597901 JDP2Q8WYK2 163 aa19.42■□□□□ 0.7
LIG1-215ENST00000597901 MYD88Q99836 296 aa19.42■□□□□ 0.7
LIG1-215ENST00000597901 SNED1Q8TER0 1413 aa19.42■□□□□ 0.7
LIG1-215ENST00000597901 DDX58O95786 925 aaKnown RBP19.41■□□□□ 0.7
LIG1-215ENST00000597901 METTL22Q9BUU2 404 aaPredicted RBP19.41■□□□□ 0.7
LIG1-215ENST00000597901 IRS4O14654 1257 aaPredicted RBP19.4■□□□□ 0.7
LIG1-215ENST00000597901 GRAPQ13588 217 aa19.4■□□□□ 0.7
LIG1-215ENST00000597901 DNAJC5GQ8N7S2 189 aa19.4■□□□□ 0.7
LIG1-215ENST00000597901 ZBTB38Q8NAP3 1195 aaPredicted RBP19.4■□□□□ 0.7
LIG1-215ENST00000597901 GRAPLQ8TC17 118 aaPredicted RBP19.4■□□□□ 0.7
LIG1-215ENST00000597901 L3MBTL3Q96JM7 780 aaPredicted RBP19.4■□□□□ 0.7
LIG1-215ENST00000597901 STK31Q9BXU1 1019 aa19.4■□□□□ 0.7
LIG1-215ENST00000597901 ZNF541Q9H0D2 1346 aa19.4■□□□□ 0.7
LIG1-215ENST00000597901 ARFGEF2Q9Y6D5 1785 aa19.39■□□□□ 0.7
LIG1-215ENST00000597901 CCDC88AQ3V6T2 1871 aa19.39■□□□□ 0.7
LIG1-215ENST00000597901 SLC4A2P04920 1241 aa19.39■□□□□ 0.69
LIG1-215ENST00000597901 KSR2Q6VAB6 950 aa19.39■□□□□ 0.69
LIG1-215ENST00000597901 LARGE2Q8N3Y3 721 aa19.39■□□□□ 0.69
LIG1-215ENST00000597901 CCDC191Q8NCU4 936 aa19.39■□□□□ 0.69
LIG1-215ENST00000597901 MAP3K2Q9Y2U5 619 aa19.39■□□□□ 0.69
LIG1-215ENST00000597901 PI4KAP2A4QPH2 592 aa19.38■□□□□ 0.69
LIG1-215ENST00000597901 IQCA1LA6NCM1 817 aa19.38■□□□□ 0.69
LIG1-215ENST00000597901 G2E3Q7L622 706 aa19.38■□□□□ 0.69
LIG1-215ENST00000597901 MPNDQ8N594 471 aa19.38■□□□□ 0.69
LIG1-215ENST00000597901 PI4KAP1Q8N8J0 262 aa19.38■□□□□ 0.69
LIG1-215ENST00000597901 RTFDC1Q9BY42 306 aaPredicted RBP19.38■□□□□ 0.69
LIG1-215ENST00000597901 VPS33BQ9H267 617 aa19.38■□□□□ 0.69
LIG1-215ENST00000597901 VAMP4O75379 141 aa19.37■□□□□ 0.69
LIG1-215ENST00000597901 EIF6P56537 245 aaKnown RBP19.37■□□□□ 0.69
LIG1-215ENST00000597901 DPP8Q6V1X1 898 aaPredicted RBP19.37■□□□□ 0.69
LIG1-215ENST00000597901 GPC2Q8N158 579 aa19.37■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms