RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 ARHGEF1Q92888 912 aaKnown RBP18.45■□□□□ 0.54
SHKBP1-211ENST00000595945 AKT1S1Q96B36 256 aa18.45■□□□□ 0.54
SHKBP1-211ENST00000595945 PCCAP05165 728 aaPredicted RBP18.44■□□□□ 0.54
SHKBP1-211ENST00000595945 BCL2L12Q9HB09 334 aa18.44■□□□□ 0.54
SHKBP1-211ENST00000595945 UBN2Q6ZU65 1347 aa18.44■□□□□ 0.54
SHKBP1-211ENST00000595945 SSFA2P28290 1259 aa18.43■□□□□ 0.54
SHKBP1-211ENST00000595945 POLA2Q14181 598 aa18.43■□□□□ 0.54
SHKBP1-211ENST00000595945 TRAPPC3LQ5T215 181 aa18.43■□□□□ 0.54
SHKBP1-211ENST00000595945 UBE3BQ7Z3V4 1068 aa18.43■□□□□ 0.54
SHKBP1-211ENST00000595945 ZNF652Q9Y2D9 606 aa18.43■□□□□ 0.54
SHKBP1-211ENST00000595945 DDX60Q8IY21 1712 aaKnown RBP18.43■□□□□ 0.54
SHKBP1-211ENST00000595945 PNMA6EA0A0J9YXQ4 647 aa18.42■□□□□ 0.54
SHKBP1-211ENST00000595945 HMMRO75330 724 aa18.42■□□□□ 0.54
SHKBP1-211ENST00000595945 GPTP24298 496 aa18.42■□□□□ 0.54
SHKBP1-211ENST00000595945 ZNF827Q17R98 1081 aa18.42■□□□□ 0.54
SHKBP1-211ENST00000595945 EPHA10Q5JZY3 1008 aa18.42■□□□□ 0.54
SHKBP1-211ENST00000595945 SSH3Q8TE77 659 aa18.42■□□□□ 0.54
SHKBP1-211ENST00000595945 DCTPP1Q9H773 170 aa18.42■□□□□ 0.54
SHKBP1-211ENST00000595945 SRP68Q9UHB9 627 aaKnown RBP18.42■□□□□ 0.54
SHKBP1-211ENST00000595945 USP42Q9H9J4 1324 aaKnown RBP18.42■□□□□ 0.54
SHKBP1-211ENST00000595945 CASZ1Q86V15 1759 aa18.42■□□□□ 0.54
SHKBP1-211ENST00000595945 EN1Q05925 392 aaPredicted RBP18.41■□□□□ 0.54
SHKBP1-211ENST00000595945 PARP10Q53GL7 1025 aa18.41■□□□□ 0.54
SHKBP1-211ENST00000595945 USPL1Q5W0Q7 1092 aa18.41■□□□□ 0.54
SHKBP1-211ENST00000595945 ZBTB38Q8NAP3 1195 aaPredicted RBP18.41■□□□□ 0.54
SHKBP1-211ENST00000595945 JARID2Q92833 1246 aaPredicted RBP18.41■□□□□ 0.54
SHKBP1-211ENST00000595945 CDHR2Q9BYE9 1310 aa18.41■□□□□ 0.54
SHKBP1-211ENST00000595945 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.4■□□□□ 0.54
SHKBP1-211ENST00000595945 EZH2Q15910 746 aaKnown RBP18.4■□□□□ 0.54
SHKBP1-211ENST00000595945 RABL6Q3YEC7 729 aaPredicted RBP18.4■□□□□ 0.54
SHKBP1-211ENST00000595945 PPP1R42Q7Z4L9 355 aa18.4■□□□□ 0.54
SHKBP1-211ENST00000595945 GCC1Q96CN9 775 aa18.4■□□□□ 0.54
SHKBP1-211ENST00000595945 PLA2G12BQ9BX93 195 aa18.4■□□□□ 0.54
SHKBP1-211ENST00000595945 BICC1Q9H694 974 aaKnown RBP18.4■□□□□ 0.54
SHKBP1-211ENST00000595945 ZPR1O75312 459 aa18.39■□□□□ 0.53
SHKBP1-211ENST00000595945 PHF14O94880 888 aa18.39■□□□□ 0.53
SHKBP1-211ENST00000595945 FOXO4P98177 505 aa18.39■□□□□ 0.53
SHKBP1-211ENST00000595945 CCDC125Q86Z20 511 aa18.39■□□□□ 0.53
SHKBP1-211ENST00000595945 RFC4P35249 363 aa18.38■□□□□ 0.53
SHKBP1-211ENST00000595945 BAG6P46379 1132 aa18.38■□□□□ 0.53
SHKBP1-211ENST00000595945 SUSD4Q5VX71 490 aa18.38■□□□□ 0.53
SHKBP1-211ENST00000595945 PDZRN3Q9UPQ7 1066 aa18.38■□□□□ 0.53
SHKBP1-211ENST00000595945 NIP7Q9Y221 180 aaKnown RBP eCLIP18.38■□□□□ 0.53
SHKBP1-211ENST00000595945 NTSR2O95665 410 aa18.37■□□□□ 0.53
SHKBP1-211ENST00000595945 SF3B2Q13435 895 aaKnown RBP18.37■□□□□ 0.53
SHKBP1-211ENST00000595945 TBC1D9BQ66K14 1250 aa18.37■□□□□ 0.53
SHKBP1-211ENST00000595945 FAM89AQ96GI7 184 aa18.37■□□□□ 0.53
SHKBP1-211ENST00000595945 SRGAP3O43295 1099 aa18.36■□□□□ 0.53
SHKBP1-211ENST00000595945 UTP14AQ9BVJ6 771 aaKnown RBP18.36■□□□□ 0.53
SHKBP1-211ENST00000595945 TRMT112Q9UI30 125 aaKnown RBP18.36■□□□□ 0.53
SHKBP1-211ENST00000595945 GYS1P13807 737 aa18.35■□□□□ 0.53
SHKBP1-211ENST00000595945 RFX5P48382 616 aaPredicted RBP18.35■□□□□ 0.53
SHKBP1-211ENST00000595945 NUCB1Q02818 461 aa18.35■□□□□ 0.53
SHKBP1-211ENST00000595945 DEFB132Q7Z7B7 95 aa18.35■□□□□ 0.53
SHKBP1-211ENST00000595945 SYNE4Q8N205 404 aa18.35■□□□□ 0.53
SHKBP1-211ENST00000595945 FLAD1Q8NFF5 587 aa18.35■□□□□ 0.53
SHKBP1-211ENST00000595945 ANO8Q9HCE9 1232 aaPredicted RBP18.35■□□□□ 0.53
SHKBP1-211ENST00000595945 NOP58Q9Y2X3 529 aaKnown RBP18.35■□□□□ 0.53
SHKBP1-211ENST00000595945 SH3TC1Q8TE82 1336 aa18.34■□□□□ 0.53
SHKBP1-211ENST00000595945 RTL5Q5HYW3 569 aaPredicted RBP18.34■□□□□ 0.53
SHKBP1-211ENST00000595945 TFCP2L1Q9NZI6 479 aa18.34■□□□□ 0.53
SHKBP1-211ENST00000595945 PNPLA7Q6ZV29 1317 aa18.33■□□□□ 0.53
SHKBP1-211ENST00000595945 IRS4O14654 1257 aaPredicted RBP18.33■□□□□ 0.52
SHKBP1-211ENST00000595945 CSF1RP07333 972 aa18.33■□□□□ 0.52
SHKBP1-211ENST00000595945 LMBR1LQ6UX01 489 aa18.33■□□□□ 0.52
SHKBP1-211ENST00000595945 COL23A1Q86Y22 540 aaPredicted RBP18.33■□□□□ 0.52
SHKBP1-211ENST00000595945 SKAP1Q86WV1 359 aa18.32■□□□□ 0.52
SHKBP1-211ENST00000595945 NRXN2Q9P2S2 1712 aa18.32■□□□□ 0.52
SHKBP1-211ENST00000595945 NFIXQ14938 502 aa18.31■□□□□ 0.52
SHKBP1-211ENST00000595945 SLC15A2Q16348 729 aa18.31■□□□□ 0.52
SHKBP1-211ENST00000595945 BICDL1Q6ZP65 573 aa18.31■□□□□ 0.52
SHKBP1-211ENST00000595945 SETDB2Q96T68 719 aa18.31■□□□□ 0.52
SHKBP1-211ENST00000595945 COPRSQ9NQ92 184 aa18.31■□□□□ 0.52
SHKBP1-211ENST00000595945 STK32BQ9NY57 414 aa18.31■□□□□ 0.52
SHKBP1-211ENST00000595945 EXOC6BQ9Y2D4 811 aa18.31■□□□□ 0.52
SHKBP1-211ENST00000595945 CARMIL3Q8ND23 1372 aa18.3■□□□□ 0.52
SHKBP1-211ENST00000595945 PDE8AO60658 829 aa18.3■□□□□ 0.52
SHKBP1-211ENST00000595945 PDE4AP27815 886 aa18.3■□□□□ 0.52
SHKBP1-211ENST00000595945 TM4SF1P30408 202 aa18.3■□□□□ 0.52
SHKBP1-211ENST00000595945 SLC10A5Q5PT55 438 aa18.3■□□□□ 0.52
SHKBP1-211ENST00000595945 ANKRD45Q5TZF3 282 aa18.3■□□□□ 0.52
SHKBP1-211ENST00000595945 CHD1LQ86WJ1 897 aa18.3■□□□□ 0.52
SHKBP1-211ENST00000595945 FAM177BA6PVY3 158 aa18.29■□□□□ 0.52
SHKBP1-211ENST00000595945 RAB11FIP3O75154 756 aa18.29■□□□□ 0.52
SHKBP1-211ENST00000595945 SURF6O75683 361 aaKnown RBP18.29■□□□□ 0.52
SHKBP1-211ENST00000595945 CTSWP56202 376 aa18.29■□□□□ 0.52
SHKBP1-211ENST00000595945 PTPN12Q05209 780 aaKnown RBP18.29■□□□□ 0.52
SHKBP1-211ENST00000595945 HSP90AB4PQ58FF6 505 aa18.29■□□□□ 0.52
SHKBP1-211ENST00000595945 TTLL11Q8NHH1 800 aa18.29■□□□□ 0.52
SHKBP1-211ENST00000595945 NYXQ9GZU5 481 aa18.29■□□□□ 0.52
SHKBP1-211ENST00000595945 PA2G4Q9UQ80 394 aaKnown RBP18.29■□□□□ 0.52
SHKBP1-211ENST00000595945 LRP5O75197 1615 aa18.28■□□□□ 0.52
SHKBP1-211ENST00000595945 HSP90B1P14625 803 aaKnown RBP18.28■□□□□ 0.52
SHKBP1-211ENST00000595945 ERFEQ4G0M1 354 aa18.28■□□□□ 0.52
SHKBP1-211ENST00000595945 NUTM1Q86Y26 1132 aa18.28■□□□□ 0.52
SHKBP1-211ENST00000595945 RIC1Q4ADV7 1423 aa18.28■□□□□ 0.52
SHKBP1-211ENST00000595945 ABCC12Q96J65 1359 aa18.28■□□□□ 0.52
SHKBP1-211ENST00000595945 TNRC6CQ9HCJ0 1690 aaKnown RBP18.28■□□□□ 0.52
SHKBP1-211ENST00000595945 HCLS1P14317 486 aaPredicted RBP18.27■□□□□ 0.52
SHKBP1-211ENST00000595945 NBPF5PQ86XG9 351 aaPredicted RBP18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms