RNA–Protein interactions for RNA: ENST00000569140.1

CDT1-203, Transcript of chromatin licensing and DNA replication factor 1, humanhuman

TSL 3

Gene CDT1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1-203ENST00000569140 NEXNQ0ZGT2 675 aa16.36■□□□□ 0.21
CDT1-203ENST00000569140 RTL5Q5HYW3 569 aaPredicted RBP16.36■□□□□ 0.21
CDT1-203ENST00000569140 KSR2Q6VAB6 950 aa16.36■□□□□ 0.21
CDT1-203ENST00000569140 BCL2L13Q9BXK5 485 aa16.36■□□□□ 0.21
CDT1-203ENST00000569140 TNRC6CQ9HCJ0 1690 aaKnown RBP16.35■□□□□ 0.21
CDT1-203ENST00000569140 GRIN3BO60391 1043 aa16.35■□□□□ 0.21
CDT1-203ENST00000569140 KCNA3P22001 575 aa16.35■□□□□ 0.21
CDT1-203ENST00000569140 METTL22Q9BUU2 404 aaPredicted RBP16.35■□□□□ 0.21
CDT1-203ENST00000569140 ZNF219Q9P2Y4 722 aaPredicted RBP16.35■□□□□ 0.21
CDT1-203ENST00000569140 PDZRN3Q9UPQ7 1066 aa16.35■□□□□ 0.21
CDT1-203ENST00000569140 DLEC1Q9Y238 1755 aa16.35■□□□□ 0.21
CDT1-203ENST00000569140 ADCY9O60503 1353 aa16.35■□□□□ 0.21
CDT1-203ENST00000569140 RPGRQ92834 1020 aaKnown RBP16.34■□□□□ 0.21
CDT1-203ENST00000569140 ISCA1Q9BUE6 129 aa16.34■□□□□ 0.21
CDT1-203ENST00000569140 SMC4Q9NTJ3 1288 aa16.34■□□□□ 0.21
CDT1-203ENST00000569140 ZBED9Q6R2W3 1325 aa16.34■□□□□ 0.21
CDT1-203ENST00000569140 SH3TC1Q8TE82 1336 aa16.34■□□□□ 0.21
CDT1-203ENST00000569140 BRCA1P38398 1863 aaKnown RBP16.33■□□□□ 0.21
CDT1-203ENST00000569140 CACNA1SQ13698 1873 aa16.33■□□□□ 0.21
CDT1-203ENST00000569140 TRMT2AQ8IZ69 625 aaKnown RBP16.33■□□□□ 0.2
CDT1-203ENST00000569140 TTLL6Q8N841 843 aa16.33■□□□□ 0.2
CDT1-203ENST00000569140 DNAAF4Q8WXU2 420 aa16.33■□□□□ 0.2
CDT1-203ENST00000569140 MASTLQ96GX5 879 aa16.33■□□□□ 0.2
CDT1-203ENST00000569140 CWC25Q9NXE8 425 aaPredicted RBP16.33■□□□□ 0.2
CDT1-203ENST00000569140 CACNA1FO60840 1977 aa16.33■□□□□ 0.2
CDT1-203ENST00000569140 F6X3S4 739 aa16.32■□□□□ 0.2
CDT1-203ENST00000569140 SRGNP10124 158 aa16.32■□□□□ 0.2
CDT1-203ENST00000569140 HCLS1P14317 486 aaPredicted RBP16.32■□□□□ 0.2
CDT1-203ENST00000569140 NPR1P16066 1061 aa16.32■□□□□ 0.2
CDT1-203ENST00000569140 RNF123Q5XPI4 1314 aa16.32■□□□□ 0.2
CDT1-203ENST00000569140 SLC4A10Q6U841 1118 aa16.32■□□□□ 0.2
CDT1-203ENST00000569140 ARHGAP27Q6ZUM4 889 aa16.32■□□□□ 0.2
CDT1-203ENST00000569140 SYNE4Q8N205 404 aa16.32■□□□□ 0.2
CDT1-203ENST00000569140 FAM89AQ96GI7 184 aa16.32■□□□□ 0.2
CDT1-203ENST00000569140 NLRP3Q96P20 1036 aa16.32■□□□□ 0.2
CDT1-203ENST00000569140 CWF19L2Q2TBE0 894 aaKnown RBP16.31■□□□□ 0.2
CDT1-203ENST00000569140 STYK1Q6J9G0 422 aa16.31■□□□□ 0.2
CDT1-203ENST00000569140 MRPL50Q8N5N7 158 aaKnown RBP16.31■□□□□ 0.2
CDT1-203ENST00000569140 SSH1Q8WYL5 1049 aa16.31■□□□□ 0.2
CDT1-203ENST00000569140 JARID2Q92833 1246 aaPredicted RBP16.31■□□□□ 0.2
CDT1-203ENST00000569140 CNKSR1Q969H4 720 aa16.31■□□□□ 0.2
CDT1-203ENST00000569140 CT47B1P0C2W7 299 aaPredicted RBP16.3■□□□□ 0.2
CDT1-203ENST00000569140 CCDC191Q8NCU4 936 aa16.3■□□□□ 0.2
CDT1-203ENST00000569140 YTHDC1Q96MU7 727 aaKnown RBP16.3■□□□□ 0.2
CDT1-203ENST00000569140 RIC1Q4ADV7 1423 aa16.29■□□□□ 0.2
CDT1-203ENST00000569140 ARFGEF1Q9Y6D6 1849 aa16.29■□□□□ 0.2
CDT1-203ENST00000569140 IRS4O14654 1257 aaPredicted RBP16.29■□□□□ 0.2
CDT1-203ENST00000569140 ALDH1L2Q3SY69 923 aa16.29■□□□□ 0.2
CDT1-203ENST00000569140 PRPF40BQ6NWY9 871 aaKnown RBP16.29■□□□□ 0.2
CDT1-203ENST00000569140 C3orf67Q6ZVT6 689 aa16.29■□□□□ 0.2
CDT1-203ENST00000569140 RBM17Q96I25 401 aaKnown RBP16.29■□□□□ 0.2
CDT1-203ENST00000569140 NEURL1BA8MQ27 555 aa16.28■□□□□ 0.2
CDT1-203ENST00000569140 C21orf2O43822 256 aa16.28■□□□□ 0.2
CDT1-203ENST00000569140 IGKV5-2P06315 115 aa16.28■□□□□ 0.2
CDT1-203ENST00000569140 YY1P25490 414 aa16.28■□□□□ 0.2
CDT1-203ENST00000569140 TRIM28Q13263 835 aaKnown RBP16.28■□□□□ 0.2
CDT1-203ENST00000569140 ZBTB38Q8NAP3 1195 aaPredicted RBP16.28■□□□□ 0.2
CDT1-203ENST00000569140 LAMB2P55268 1798 aa16.27■□□□□ 0.2
CDT1-203ENST00000569140 DDX60Q8IY21 1712 aaKnown RBP16.27■□□□□ 0.19
CDT1-203ENST00000569140 PTPRCP08575 1304 aa16.26■□□□□ 0.19
CDT1-203ENST00000569140 KLRG2A4D1S0 409 aaPredicted RBP16.26■□□□□ 0.19
CDT1-203ENST00000569140 PCCAP05165 728 aaPredicted RBP16.26■□□□□ 0.19
CDT1-203ENST00000569140 HSP90B1P14625 803 aaKnown RBP16.26■□□□□ 0.19
CDT1-203ENST00000569140 ALDH1B1P30837 517 aa16.26■□□□□ 0.19
CDT1-203ENST00000569140 CRY2Q49AN0 593 aa16.26■□□□□ 0.19
CDT1-203ENST00000569140 SLC10A5Q5PT55 438 aa16.26■□□□□ 0.19
CDT1-203ENST00000569140 LINS1Q8NG48 757 aa16.26■□□□□ 0.19
CDT1-203ENST00000569140 SLX4Q8IY92 1834 aa16.25■□□□□ 0.19
CDT1-203ENST00000569140 RARSP54136 660 aaKnown RBP16.25■□□□□ 0.19
CDT1-203ENST00000569140 RASSF7Q02833 373 aa16.25■□□□□ 0.19
CDT1-203ENST00000569140 DDX46Q7L014 1031 aaKnown RBP16.25■□□□□ 0.19
CDT1-203ENST00000569140 UBE3BQ7Z3V4 1068 aa16.25■□□□□ 0.19
CDT1-203ENST00000569140 CCDC85AQ96PX6 553 aaPredicted RBP16.25■□□□□ 0.19
CDT1-203ENST00000569140 CHD4Q14839 1912 aa16.25■□□□□ 0.19
CDT1-203ENST00000569140 PPEF1O14829 653 aaPredicted RBP16.24■□□□□ 0.19
CDT1-203ENST00000569140 GCKRQ14397 625 aa16.24■□□□□ 0.19
CDT1-203ENST00000569140 SRCIN1Q9C0H9 1055 aa16.24■□□□□ 0.19
CDT1-203ENST00000569140 TMX4Q9H1E5 349 aaPredicted RBP16.24■□□□□ 0.19
CDT1-203ENST00000569140 NOB1Q9ULX3 412 aaKnown RBP16.24■□□□□ 0.19
CDT1-203ENST00000569140 ABCC4O15439 1325 aa16.23■□□□□ 0.19
CDT1-203ENST00000569140 PDE8AO60658 829 aa16.23■□□□□ 0.19
CDT1-203ENST00000569140 BEND3Q5T5X7 828 aa16.23■□□□□ 0.19
CDT1-203ENST00000569140 SOGA3Q5TF21 947 aa16.23■□□□□ 0.19
CDT1-203ENST00000569140 FRAT1Q92837 279 aaPredicted RBP16.23■□□□□ 0.19
CDT1-203ENST00000569140 KIF16BQ96L93 1317 aa16.22■□□□□ 0.19
CDT1-203ENST00000569140 CDHR2Q9BYE9 1310 aa16.22■□□□□ 0.19
CDT1-203ENST00000569140 CCDC93Q567U6 631 aa16.22■□□□□ 0.19
CDT1-203ENST00000569140 OLFM4Q6UX06 510 aa16.22■□□□□ 0.19
CDT1-203ENST00000569140 CRAMP1Q96RY5 1269 aa16.22■□□□□ 0.19
CDT1-203ENST00000569140 C9orf78Q9NZ63 289 aaPredicted RBP16.22■□□□□ 0.19
CDT1-203ENST00000569140 BCAR3O75815 825 aa16.21■□□□□ 0.19
CDT1-203ENST00000569140 HOXA10P31260 410 aaPredicted RBP16.21■□□□□ 0.19
CDT1-203ENST00000569140 CCDC152Q4G0S7 254 aa16.21■□□□□ 0.19
CDT1-203ENST00000569140 API5Q9BZZ5 524 aaKnown RBP16.21■□□□□ 0.19
CDT1-203ENST00000569140 RNF181Q9P0P0 153 aa16.21■□□□□ 0.19
CDT1-203ENST00000569140 ALDH1L1O75891 902 aa16.2■□□□□ 0.18
CDT1-203ENST00000569140 CTSWP56202 376 aa16.2■□□□□ 0.18
CDT1-203ENST00000569140 GRAPQ13588 217 aa16.2■□□□□ 0.18
CDT1-203ENST00000569140 GRAPLQ8TC17 118 aaPredicted RBP16.2■□□□□ 0.18
CDT1-203ENST00000569140 TAOK3Q9H2K8 898 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms