RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 ATRNO75882 1429 aa16.01■□□□□ 0.15
VPS4A-204ENST00000566354 FLIIQ13045 1269 aa16■□□□□ 0.15
VPS4A-204ENST00000566354 TMEM63CQ9P1W3 806 aa16■□□□□ 0.15
VPS4A-204ENST00000566354 RBM27Q9P2N5 1060 aaKnown RBP16■□□□□ 0.15
VPS4A-204ENST00000566354 TRPC5Q9UL62 973 aaPredicted RBP16■□□□□ 0.15
VPS4A-204ENST00000566354 ASAP1Q9ULH1 1129 aa16■□□□□ 0.15
VPS4A-204ENST00000566354 UBR2Q8IWV8 1755 aa16■□□□□ 0.15
VPS4A-204ENST00000566354 TUBGCP6Q96RT7 1819 aa16■□□□□ 0.15
VPS4A-204ENST00000566354 EPB41L2O43491 1005 aaKnown RBP16■□□□□ 0.15
VPS4A-204ENST00000566354 PTCD1O75127 700 aaKnown RBP16■□□□□ 0.15
VPS4A-204ENST00000566354 FKBP5Q13451 457 aaPredicted RBP16■□□□□ 0.15
VPS4A-204ENST00000566354 PDZRN4Q6ZMN7 1036 aaPredicted RBP16■□□□□ 0.15
VPS4A-204ENST00000566354 PHAXQ9H814 394 aaKnown RBP16■□□□□ 0.15
VPS4A-204ENST00000566354 KCPQ6ZWJ8 1503 aa15.99■□□□□ 0.15
VPS4A-204ENST00000566354 KIAA1211Q6ZU35 1233 aa15.99■□□□□ 0.15
VPS4A-204ENST00000566354 ACSBG1Q96GR2 724 aa15.99■□□□□ 0.15
VPS4A-204ENST00000566354 USP16Q9Y5T5 823 aa15.99■□□□□ 0.15
VPS4A-204ENST00000566354 THSD7AQ9UPZ6 1657 aa15.99■□□□□ 0.15
VPS4A-204ENST00000566354 BCL9O00512 1426 aa15.99■□□□□ 0.15
VPS4A-204ENST00000566354 PNMA6EA0A0J9YXQ4 647 aa15.99■□□□□ 0.15
VPS4A-204ENST00000566354 TRIM6-TRIM34B2RNG4 842 aa15.99■□□□□ 0.15
VPS4A-204ENST00000566354 SNRPA1P09661 255 aaKnown RBP15.99■□□□□ 0.15
VPS4A-204ENST00000566354 TERF1P54274 439 aa15.99■□□□□ 0.15
VPS4A-204ENST00000566354 PROSER3Q2NL68 480 aa15.99■□□□□ 0.15
VPS4A-204ENST00000566354 TSHZ3Q63HK5 1081 aa15.99■□□□□ 0.15
VPS4A-204ENST00000566354 QTRT2Q9H974 415 aaKnown RBP15.99■□□□□ 0.15
VPS4A-204ENST00000566354 ANO2Q9NQ90 1003 aa15.99■□□□□ 0.15
VPS4A-204ENST00000566354 AOX1Q06278 1338 aa15.98■□□□□ 0.15
VPS4A-204ENST00000566354 RILPL2Q969X0 211 aa15.98■□□□□ 0.15
VPS4A-204ENST00000566354 SYCE3A1L190 88 aa15.97■□□□□ 0.15
VPS4A-204ENST00000566354 HOMEZQ8IX15 550 aa15.97■□□□□ 0.15
VPS4A-204ENST00000566354 ATG3Q9NT62 314 aa15.97■□□□□ 0.15
VPS4A-204ENST00000566354 PALD1Q9ULE6 856 aa15.97■□□□□ 0.15
VPS4A-204ENST00000566354 ZNF500O60304 480 aaPredicted RBP15.97■□□□□ 0.15
VPS4A-204ENST00000566354 MCM5P33992 734 aa15.96■□□□□ 0.15
VPS4A-204ENST00000566354 FAM182BQ5T319 152 aa15.96■□□□□ 0.15
VPS4A-204ENST00000566354 DBF4Q9UBU7 674 aaPredicted RBP15.96■□□□□ 0.15
VPS4A-204ENST00000566354 NSFL1CQ9UNZ2 370 aaKnown RBP15.96■□□□□ 0.15
VPS4A-204ENST00000566354 PIP4K2AP48426 406 aaPredicted RBP15.96■□□□□ 0.15
VPS4A-204ENST00000566354 FOXD4L5Q5VV16 416 aaPredicted RBP15.96■□□□□ 0.15
VPS4A-204ENST00000566354 FOXD4L4Q8WXT5 416 aaPredicted RBP15.96■□□□□ 0.15
VPS4A-204ENST00000566354 CHAMP1Q96JM3 812 aa15.96■□□□□ 0.15
VPS4A-204ENST00000566354 EP400Q96L91 3159 aa15.95■□□□□ 0.14
VPS4A-204ENST00000566354 PDIA6Q15084 440 aa15.95■□□□□ 0.14
VPS4A-204ENST00000566354 SYAP1Q96A49 352 aaPredicted RBP15.95■□□□□ 0.14
VPS4A-204ENST00000566354 CHMP4AQ9BY43 222 aa15.95■□□□□ 0.14
VPS4A-204ENST00000566354 LRRFIP2Q9Y608 721 aaKnown RBP15.95■□□□□ 0.14
VPS4A-204ENST00000566354 KCNQ2O43526 872 aa15.95■□□□□ 0.14
VPS4A-204ENST00000566354 FBXO41Q8TF61 875 aa15.95■□□□□ 0.14
VPS4A-204ENST00000566354 PXDNLA1KZ92 1463 aa15.94■□□□□ 0.14
VPS4A-204ENST00000566354 ONECUT3O60422 494 aaPredicted RBP15.94■□□□□ 0.14
VPS4A-204ENST00000566354 BRD2P25440 801 aaKnown RBP15.94■□□□□ 0.14
VPS4A-204ENST00000566354 LAMB4A4D0S4 1761 aa15.94■□□□□ 0.14
VPS4A-204ENST00000566354 MYL6BP14649 208 aa15.94■□□□□ 0.14
VPS4A-204ENST00000566354 SEPT12Q8IYM1 358 aa15.94■□□□□ 0.14
VPS4A-204ENST00000566354 USP44Q9H0E7 712 aa15.94■□□□□ 0.14
VPS4A-204ENST00000566354 DDX21Q9NR30 783 aaKnown RBP eCLIP15.94■□□□□ 0.14
VPS4A-204ENST00000566354 ZKSCAN5Q9Y2L8 839 aa15.94■□□□□ 0.14
VPS4A-204ENST00000566354 RAB11FIP3O75154 756 aa15.93■□□□□ 0.14
VPS4A-204ENST00000566354 UBTFL1P0CB47 393 aaPredicted RBP15.93■□□□□ 0.14
VPS4A-204ENST00000566354 SSH3Q8TE77 659 aa15.93■□□□□ 0.14
VPS4A-204ENST00000566354 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.93■□□□□ 0.14
VPS4A-204ENST00000566354 CCDC39Q9UFE4 941 aa15.93■□□□□ 0.14
VPS4A-204ENST00000566354 N4BP2Q86UW6 1770 aaPredicted RBP15.93■□□□□ 0.14
VPS4A-204ENST00000566354 HSPA4P34932 840 aa15.93■□□□□ 0.14
VPS4A-204ENST00000566354 WDR33Q9C0J8 1336 aaKnown RBP15.92■□□□□ 0.14
VPS4A-204ENST00000566354 SLC4A9Q96Q91 983 aa15.92■□□□□ 0.14
VPS4A-204ENST00000566354 PHF14O94880 888 aa15.91■□□□□ 0.14
VPS4A-204ENST00000566354 PTF1AQ7RTS3 328 aa15.91■□□□□ 0.14
VPS4A-204ENST00000566354 UPF3BQ9BZI7 483 aaKnown RBP15.91■□□□□ 0.14
VPS4A-204ENST00000566354 TSPY26PQ9H489 355 aa15.91■□□□□ 0.14
VPS4A-204ENST00000566354 HYPKQ9NX55 129 aa15.91■□□□□ 0.14
VPS4A-204ENST00000566354 PI4KAP2A4QPH2 592 aa15.91■□□□□ 0.14
VPS4A-204ENST00000566354 AIMP1Q12904 312 aaKnown RBP15.91■□□□□ 0.14
VPS4A-204ENST00000566354 CSPP1Q1MSJ5 1256 aa15.91■□□□□ 0.14
VPS4A-204ENST00000566354 NOL8Q76FK4 1167 aaKnown RBP15.91■□□□□ 0.14
VPS4A-204ENST00000566354 PI4KAP1Q8N8J0 262 aa15.91■□□□□ 0.14
VPS4A-204ENST00000566354 LRP10Q7Z4F1 713 aa15.9■□□□□ 0.14
VPS4A-204ENST00000566354 DNAJC10Q8IXB1 793 aa15.9■□□□□ 0.14
VPS4A-204ENST00000566354 PDCL3Q9H2J4 239 aa15.9■□□□□ 0.14
VPS4A-204ENST00000566354 NBPF26B4DH59 902 aa15.9■□□□□ 0.14
VPS4A-204ENST00000566354 A1BGP04217 495 aa15.9■□□□□ 0.14
VPS4A-204ENST00000566354 NBPF14Q5TI25 921 aa15.9■□□□□ 0.14
VPS4A-204ENST00000566354 NBPF10Q6P3W6 841 aaKnown RBP15.9■□□□□ 0.14
VPS4A-204ENST00000566354 NBPF15Q8N660 670 aa15.9■□□□□ 0.14
VPS4A-204ENST00000566354 ADCY9O60503 1353 aa15.9■□□□□ 0.14
VPS4A-204ENST00000566354 IL1RAPL2Q9NP60 686 aa15.89■□□□□ 0.13
VPS4A-204ENST00000566354 POLA2Q14181 598 aa15.89■□□□□ 0.13
VPS4A-204ENST00000566354 SURF6O75683 361 aaKnown RBP15.88■□□□□ 0.13
VPS4A-204ENST00000566354 ZNF772Q68DY9 489 aaPredicted RBP15.88■□□□□ 0.13
VPS4A-204ENST00000566354 COPS6Q7L5N1 327 aa15.88■□□□□ 0.13
VPS4A-204ENST00000566354 RNF214Q8ND24 703 aa15.88■□□□□ 0.13
VPS4A-204ENST00000566354 XAGE3Q8WTP9 111 aa15.88■□□□□ 0.13
VPS4A-204ENST00000566354 PPP1R42Q7Z4L9 355 aa15.88■□□□□ 0.13
VPS4A-204ENST00000566354 USP48Q86UV5 1035 aa15.88■□□□□ 0.13
VPS4A-204ENST00000566354 NUTM1Q86Y26 1132 aa15.88■□□□□ 0.13
VPS4A-204ENST00000566354 RHPN1Q8TCX5 695 aa15.88■□□□□ 0.13
VPS4A-204ENST00000566354 IL25Q9H293 177 aa15.88■□□□□ 0.13
VPS4A-204ENST00000566354 RAD50Q92878 1312 aa15.87■□□□□ 0.13
VPS4A-204ENST00000566354 BRWD3Q6RI45 1802 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms