RNA–Protein interactions for RNA: ENST00000566126.5

CLK3-217, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 732 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-217ENST00000566126 CC2D2BQ6DHV5 1058 aa22.7■■□□□ 1.22
CLK3-217ENST00000566126 CTU1Q7Z7A3 348 aaKnown RBP22.7■■□□□ 1.22
CLK3-217ENST00000566126 NBPF15Q8N660 670 aa22.7■■□□□ 1.22
CLK3-217ENST00000566126 FAM177BA6PVY3 158 aa22.69■■□□□ 1.22
CLK3-217ENST00000566126 HMOX1P09601 288 aa22.69■■□□□ 1.22
CLK3-217ENST00000566126 RNF186Q9NXI6 227 aa22.69■■□□□ 1.22
CLK3-217ENST00000566126 HPS5Q9UPZ3 1129 aa22.69■■□□□ 1.22
CLK3-217ENST00000566126 TRPA1O75762 1119 aa22.68■■□□□ 1.22
CLK3-217ENST00000566126 HIRAP54198 1017 aaPredicted RBP22.68■■□□□ 1.22
CLK3-217ENST00000566126 CRY2Q49AN0 593 aa22.68■■□□□ 1.22
CLK3-217ENST00000566126 NIP7Q9Y221 180 aaKnown RBP eCLIP22.68■■□□□ 1.22
CLK3-217ENST00000566126 NIM1KQ8IY84 436 aa22.67■■□□□ 1.22
CLK3-217ENST00000566126 ZNF652Q9Y2D9 606 aa22.67■■□□□ 1.22
CLK3-217ENST00000566126 KIF23Q02241 960 aaPredicted RBP22.66■■□□□ 1.22
CLK3-217ENST00000566126 CDC37L1Q7L3B6 337 aa22.66■■□□□ 1.22
CLK3-217ENST00000566126 ZC3H15Q8WU90 426 aaKnown RBP22.66■■□□□ 1.22
CLK3-217ENST00000566126 FMNL2Q96PY5 1086 aa22.66■■□□□ 1.22
CLK3-217ENST00000566126 NPC1L1Q9UHC9 1359 aa22.65■■□□□ 1.22
CLK3-217ENST00000566126 GMPSP49915 693 aaPredicted RBP22.65■■□□□ 1.22
CLK3-217ENST00000566126 RGMBQ6NW40 437 aa22.65■■□□□ 1.22
CLK3-217ENST00000566126 DLK2Q6UY11 383 aa22.65■■□□□ 1.22
CLK3-217ENST00000566126 MORC1Q86VD1 984 aa22.65■■□□□ 1.22
CLK3-217ENST00000566126 IL17REQ8NFR9 667 aa22.65■■□□□ 1.22
CLK3-217ENST00000566126 USP16Q9Y5T5 823 aa22.65■■□□□ 1.22
CLK3-217ENST00000566126 ABCC12Q96J65 1359 aa22.64■■□□□ 1.22
CLK3-217ENST00000566126 MKI67P46013 3256 aaKnown RBP22.64■■□□□ 1.22
CLK3-217ENST00000566126 CXCL9Q07325 125 aa22.64■■□□□ 1.21
CLK3-217ENST00000566126 TRPM4Q8TD43 1214 aa22.64■■□□□ 1.21
CLK3-217ENST00000566126 KCNQ3O43525 872 aa22.63■■□□□ 1.21
CLK3-217ENST00000566126 TEFQ10587 303 aa22.63■■□□□ 1.21
CLK3-217ENST00000566126 POLR3GLQ9BT43 218 aa22.63■■□□□ 1.21
CLK3-217ENST00000566126 PPIP5K2O43314 1243 aa22.62■■□□□ 1.21
CLK3-217ENST00000566126 AOC3Q16853 763 aa22.62■■□□□ 1.21
CLK3-217ENST00000566126 GRIPAP1Q4V328 841 aa22.62■■□□□ 1.21
CLK3-217ENST00000566126 HOXA10P31260 410 aaPredicted RBP22.61■■□□□ 1.21
CLK3-217ENST00000566126 USP48Q86UV5 1035 aa22.61■■□□□ 1.21
CLK3-217ENST00000566126 POLR2AP24928 1970 aaKnown RBP22.6■■□□□ 1.21
CLK3-217ENST00000566126 PRAMEF22A3QJZ6 481 aa22.6■■□□□ 1.21
CLK3-217ENST00000566126 RGL2O15211 777 aa22.6■■□□□ 1.21
CLK3-217ENST00000566126 CCDC102AQ96A19 550 aa22.6■■□□□ 1.21
CLK3-217ENST00000566126 CSRNP1Q96S65 589 aa22.6■■□□□ 1.21
CLK3-217ENST00000566126 PANK3Q9H999 370 aa22.6■■□□□ 1.21
CLK3-217ENST00000566126 ZNRF3Q9ULT6 936 aa22.6■■□□□ 1.21
CLK3-217ENST00000566126 CDHR2Q9BYE9 1310 aa22.59■■□□□ 1.21
CLK3-217ENST00000566126 RIC1Q4ADV7 1423 aa22.59■■□□□ 1.21
CLK3-217ENST00000566126 GTF2E1P29083 439 aaPredicted RBP22.59■■□□□ 1.21
CLK3-217ENST00000566126 HLFQ16534 295 aa22.59■■□□□ 1.21
CLK3-217ENST00000566126 NUTM1Q86Y26 1132 aa22.59■■□□□ 1.21
CLK3-217ENST00000566126 SHTN1A0MZ66 631 aa22.58■■□□□ 1.21
CLK3-217ENST00000566126 TCERG1O14776 1098 aaKnown RBP22.58■■□□□ 1.21
CLK3-217ENST00000566126 FXR1P51114 621 aaKnown RBP eCLIP22.58■■□□□ 1.21
CLK3-217ENST00000566126 ZNF157P51786 506 aaPredicted RBP22.57■■□□□ 1.2
CLK3-217ENST00000566126 RPGRQ92834 1020 aaKnown RBP22.57■■□□□ 1.2
CLK3-217ENST00000566126 GBA2Q9HCG7 927 aaPredicted RBP22.57■■□□□ 1.2
CLK3-217ENST00000566126 KIF7Q2M1P5 1343 aa22.57■■□□□ 1.2
CLK3-217ENST00000566126 NBPF26B4DH59 902 aa22.56■■□□□ 1.2
CLK3-217ENST00000566126 PPEF1O14829 653 aaPredicted RBP22.56■■□□□ 1.2
CLK3-217ENST00000566126 PKN2Q16513 984 aaKnown RBP22.56■■□□□ 1.2
CLK3-217ENST00000566126 NBPF10Q6P3W6 841 aaKnown RBP22.56■■□□□ 1.2
CLK3-217ENST00000566126 SLC10A3P09131 477 aa22.55■■□□□ 1.2
CLK3-217ENST00000566126 BCL2L13Q9BXK5 485 aa22.55■■□□□ 1.2
CLK3-217ENST00000566126 VPS33BQ9H267 617 aa22.55■■□□□ 1.2
CLK3-217ENST00000566126 GNAT3A8MTJ3 354 aa22.54■■□□□ 1.2
CLK3-217ENST00000566126 CRAMP1Q96RY5 1269 aa22.54■■□□□ 1.2
CLK3-217ENST00000566126 CNOT7Q9UIV1 285 aaKnown RBP22.54■■□□□ 1.2
CLK3-217ENST00000566126 CEMIPQ8WUJ3 1361 aa22.53■■□□□ 1.2
CLK3-217ENST00000566126 NUP98P52948 1817 aa22.53■■□□□ 1.2
CLK3-217ENST00000566126 RAD17O75943 681 aa22.53■■□□□ 1.2
CLK3-217ENST00000566126 C2orf69Q8N8R5 385 aa22.53■■□□□ 1.2
CLK3-217ENST00000566126 RBM17Q96I25 401 aaKnown RBP22.52■■□□□ 1.2
CLK3-217ENST00000566126 NYXQ9GZU5 481 aa22.52■■□□□ 1.2
CLK3-217ENST00000566126 BTBD11A6QL63 1104 aa22.51■■□□□ 1.19
CLK3-217ENST00000566126 KRT26Q7Z3Y9 468 aa22.51■■□□□ 1.19
CLK3-217ENST00000566126 RTFDC1Q9BY42 306 aaPredicted RBP22.51■■□□□ 1.19
CLK3-217ENST00000566126 SZT2Q5T011 3432 aa22.5■■□□□ 1.19
CLK3-217ENST00000566126 C3orf67Q6ZVT6 689 aa22.5■■□□□ 1.19
CLK3-217ENST00000566126 ZNF296Q8WUU4 475 aaPredicted RBP22.5■■□□□ 1.19
CLK3-217ENST00000566126 HDAC9Q9UKV0 1011 aa22.5■■□□□ 1.19
CLK3-217ENST00000566126 ADM5C9JUS6 153 aa22.49■■□□□ 1.19
CLK3-217ENST00000566126 TNIP1Q15025 636 aa22.49■■□□□ 1.19
CLK3-217ENST00000566126 MICALL2Q8IY33 904 aa22.49■■□□□ 1.19
CLK3-217ENST00000566126 ATP6V0A2Q9Y487 856 aa22.49■■□□□ 1.19
CLK3-217ENST00000566126 H7C1D1 291 aa22.48■■□□□ 1.19
CLK3-217ENST00000566126 SNRPA1P09661 255 aaKnown RBP22.48■■□□□ 1.19
CLK3-217ENST00000566126 SAMD7Q7Z3H4 446 aa22.48■■□□□ 1.19
CLK3-217ENST00000566126 HTTP42858 3142 aa22.48■■□□□ 1.19
CLK3-217ENST00000566126 YDJCA8MPS7 323 aa22.47■■□□□ 1.19
CLK3-217ENST00000566126 EGFRP00533 1210 aa22.47■■□□□ 1.19
CLK3-217ENST00000566126 KIAA2012Q0VF49 1180 aa22.47■■□□□ 1.19
CLK3-217ENST00000566126 FBXO46Q6PJ61 603 aaPredicted RBP22.47■■□□□ 1.19
CLK3-217ENST00000566126 REM2Q8IYK8 340 aaPredicted RBP22.47■■□□□ 1.19
CLK3-217ENST00000566126 SUPT20HQ8NEM7 779 aa22.47■■□□□ 1.19
CLK3-217ENST00000566126 GAS2L2Q8NHY3 880 aa22.47■■□□□ 1.19
CLK3-217ENST00000566126 RASAL3Q86YV0 1011 aa22.46■■□□□ 1.19
CLK3-217ENST00000566126 DIAPH1O60610 1272 aaKnown RBP22.45■■□□□ 1.18
CLK3-217ENST00000566126 ZBTB12Q9Y330 459 aaPredicted RBP22.45■■□□□ 1.18
CLK3-217ENST00000566126 UBN2Q6ZU65 1347 aa22.45■■□□□ 1.18
CLK3-217ENST00000566126 IBTKQ9P2D0 1353 aaPredicted RBP22.45■■□□□ 1.18
CLK3-217ENST00000566126 TBC1D8O95759 1140 aa22.44■■□□□ 1.18
CLK3-217ENST00000566126 TBC1D10BQ4KMP7 808 aaPredicted RBP22.44■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms