RNA–Protein interactions for RNA: ENST00000564841.1

LINC00554-201, long intergenic non-protein coding RNA 554, humanhuman

BASIC

Gene LINC00554, Length 3,011 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00554-201ENST00000564841 TMEM94Q12767 1356 aa19.33■□□□□ 0.69
LINC00554-201ENST00000564841 ZFP91Q96JP5 570 aaPredicted RBP19.33■□□□□ 0.69
LINC00554-201ENST00000564841 CBX8Q9HC52 389 aa19.33■□□□□ 0.69
LINC00554-201ENST00000564841 TYRO3Q06418 890 aa19.33■□□□□ 0.68
LINC00554-201ENST00000564841 FAM200AQ8TCP9 573 aa19.33■□□□□ 0.68
LINC00554-201ENST00000564841 GTF3C6Q969F1 213 aa19.33■□□□□ 0.68
LINC00554-201ENST00000564841 SMC3Q9UQE7 1217 aa19.33■□□□□ 0.68
LINC00554-201ENST00000564841 FMN2Q9NZ56 1722 aa19.33■□□□□ 0.68
LINC00554-201ENST00000564841 CEP135Q66GS9 1140 aa19.33■□□□□ 0.68
LINC00554-201ENST00000564841 CCDC66A2RUB6 948 aa19.32■□□□□ 0.68
LINC00554-201ENST00000564841 TPM3P06753 285 aa19.32■□□□□ 0.68
LINC00554-201ENST00000564841 OSBPL3Q9H4L5 887 aa19.32■□□□□ 0.68
LINC00554-201ENST00000564841 ZNF446Q9NWS9 450 aa19.32■□□□□ 0.68
LINC00554-201ENST00000564841 NUTM1Q86Y26 1132 aa19.31■□□□□ 0.68
LINC00554-201ENST00000564841 KCNH5Q8NCM2 988 aa19.31■□□□□ 0.68
LINC00554-201ENST00000564841 GJB2P29033 226 aa19.31■□□□□ 0.68
LINC00554-201ENST00000564841 ZNF530Q6P9A1 599 aaPredicted RBP19.31■□□□□ 0.68
LINC00554-201ENST00000564841 ANKRD24Q8TF21 1146 aa19.31■□□□□ 0.68
LINC00554-201ENST00000564841 ANAPC15P60006 121 aa19.3■□□□□ 0.68
LINC00554-201ENST00000564841 NLRP2Q9NX02 1062 aa19.3■□□□□ 0.68
LINC00554-201ENST00000564841 A0A087WWV3 80 aa19.3■□□□□ 0.68
LINC00554-201ENST00000564841 ANXA1P04083 346 aa19.3■□□□□ 0.68
LINC00554-201ENST00000564841 CSB-PGBD3P0DP91 1061 aa19.3■□□□□ 0.68
LINC00554-201ENST00000564841 TTC6Q86TZ1 520 aa19.3■□□□□ 0.68
LINC00554-201ENST00000564841 LRRN4CLQ8ND94 238 aa19.3■□□□□ 0.68
LINC00554-201ENST00000564841 HNRNPH2P55795 449 aaKnown RBP19.3■□□□□ 0.68
LINC00554-201ENST00000564841 NECAB1Q8N987 351 aa19.3■□□□□ 0.68
LINC00554-201ENST00000564841 MTMR6Q9Y217 621 aa19.3■□□□□ 0.68
LINC00554-201ENST00000564841 KCNQ3O43525 872 aa19.29■□□□□ 0.68
LINC00554-201ENST00000564841 ZNF75DP51815 510 aa19.29■□□□□ 0.68
LINC00554-201ENST00000564841 ZNF397Q8NF99 534 aaPredicted RBP19.29■□□□□ 0.68
LINC00554-201ENST00000564841 STK31Q9BXU1 1019 aa19.29■□□□□ 0.68
LINC00554-201ENST00000564841 TFIP11Q9UBB9 837 aaKnown RBP19.29■□□□□ 0.68
LINC00554-201ENST00000564841 SNX14Q9Y5W7 946 aa19.29■□□□□ 0.68
LINC00554-201ENST00000564841 CLIP2Q9UDT6 1046 aa19.29■□□□□ 0.68
LINC00554-201ENST00000564841 SYCP1Q15431 976 aa19.28■□□□□ 0.68
LINC00554-201ENST00000564841 PAXIP1Q6ZW49 1069 aaPredicted RBP19.28■□□□□ 0.68
LINC00554-201ENST00000564841 DNAJC25Q9H1X3 360 aa19.28■□□□□ 0.68
LINC00554-201ENST00000564841 DACT1Q9NYF0 836 aa19.28■□□□□ 0.68
LINC00554-201ENST00000564841 SPG7Q9UQ90 795 aa19.28■□□□□ 0.68
LINC00554-201ENST00000564841 CRB1P82279 1406 aa19.28■□□□□ 0.68
LINC00554-201ENST00000564841 KDRP35968 1356 aa19.28■□□□□ 0.68
LINC00554-201ENST00000564841 HSPA4P34932 840 aa19.28■□□□□ 0.68
LINC00554-201ENST00000564841 MAP3K11Q16584 847 aa19.28■□□□□ 0.68
LINC00554-201ENST00000564841 PAXBP1Q9Y5B6 917 aa19.28■□□□□ 0.68
LINC00554-201ENST00000564841 LRRFIP2Q9Y608 721 aaKnown RBP19.28■□□□□ 0.68
LINC00554-201ENST00000564841 COL9A3Q14050 684 aaPredicted RBP19.27■□□□□ 0.68
LINC00554-201ENST00000564841 NUP62CLQ9H1M0 184 aa19.27■□□□□ 0.68
LINC00554-201ENST00000564841 SALL3Q9BXA9 1300 aa19.27■□□□□ 0.68
LINC00554-201ENST00000564841 HMMRO75330 724 aa19.27■□□□□ 0.67
LINC00554-201ENST00000564841 TEFQ10587 303 aa19.27■□□□□ 0.67
LINC00554-201ENST00000564841 ARHGEF25Q86VW2 580 aa19.27■□□□□ 0.67
LINC00554-201ENST00000564841 LRRCC1Q9C099 1032 aa19.27■□□□□ 0.67
LINC00554-201ENST00000564841 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.27■□□□□ 0.67
LINC00554-201ENST00000564841 ERBB3P21860 1342 aa19.27■□□□□ 0.67
LINC00554-201ENST00000564841 TTC14Q96N46 770 aa19.26■□□□□ 0.67
LINC00554-201ENST00000564841 TAF7Q15545 349 aaPredicted RBP19.26■□□□□ 0.67
LINC00554-201ENST00000564841 PHAXQ9H814 394 aaKnown RBP19.26■□□□□ 0.67
LINC00554-201ENST00000564841 LIMCH1Q9UPQ0 1083 aa19.25■□□□□ 0.67
LINC00554-201ENST00000564841 MAP3K5Q99683 1374 aa19.25■□□□□ 0.67
LINC00554-201ENST00000564841 TULP2O00295 520 aa19.25■□□□□ 0.67
LINC00554-201ENST00000564841 CASTP20810 708 aaKnown RBP19.25■□□□□ 0.67
LINC00554-201ENST00000564841 PLA2G4DQ86XP0 818 aa19.25■□□□□ 0.67
LINC00554-201ENST00000564841 DNAJC2Q99543 621 aaKnown RBP19.25■□□□□ 0.67
LINC00554-201ENST00000564841 TNMDQ9H2S6 317 aa19.25■□□□□ 0.67
LINC00554-201ENST00000564841 RAD50Q92878 1312 aa19.25■□□□□ 0.67
LINC00554-201ENST00000564841 GNAI2P04899 355 aa19.25■□□□□ 0.67
LINC00554-201ENST00000564841 ERCC6LQ2NKX8 1250 aa19.25■□□□□ 0.67
LINC00554-201ENST00000564841 FILIP1Q7Z7B0 1213 aa19.25■□□□□ 0.67
LINC00554-201ENST00000564841 USP16Q9Y5T5 823 aa19.25■□□□□ 0.67
LINC00554-201ENST00000564841 FLIIQ13045 1269 aa19.24■□□□□ 0.67
LINC00554-201ENST00000564841 NEK11Q8NG66 645 aa19.24■□□□□ 0.67
LINC00554-201ENST00000564841 ZNF142P52746 1687 aaPredicted RBP19.24■□□□□ 0.67
LINC00554-201ENST00000564841 HAP1P54257 671 aaPredicted RBP19.24■□□□□ 0.67
LINC00554-201ENST00000564841 ST3GAL1Q11201 340 aa19.24■□□□□ 0.67
LINC00554-201ENST00000564841 ADCK5Q3MIX3 580 aa19.24■□□□□ 0.67
LINC00554-201ENST00000564841 NOL10Q9BSC4 688 aaKnown RBP19.24■□□□□ 0.67
LINC00554-201ENST00000564841 PTPN14Q15678 1187 aa19.23■□□□□ 0.67
LINC00554-201ENST00000564841 C1orf141Q5JVX7 400 aa19.23■□□□□ 0.67
LINC00554-201ENST00000564841 HDGFL1Q5TGJ6 251 aa19.23■□□□□ 0.67
LINC00554-201ENST00000564841 CALCOCO1Q9P1Z2 691 aa19.23■□□□□ 0.67
LINC00554-201ENST00000564841 C1orf167Q5SNV9 1468 aa19.23■□□□□ 0.67
LINC00554-201ENST00000564841 POLR3GO15318 223 aaPredicted RBP19.23■□□□□ 0.67
LINC00554-201ENST00000564841 CWC27Q6UX04 472 aaKnown RBP19.23■□□□□ 0.67
LINC00554-201ENST00000564841 CDC37L1Q7L3B6 337 aa19.23■□□□□ 0.67
LINC00554-201ENST00000564841 FAM53CQ9NYF3 392 aa19.23■□□□□ 0.67
LINC00554-201ENST00000564841 ZNF165P49910 485 aa19.22■□□□□ 0.67
LINC00554-201ENST00000564841 KIF24Q5T7B8 1368 aa19.22■□□□□ 0.67
LINC00554-201ENST00000564841 FBXW7Q969H0 707 aa19.22■□□□□ 0.67
LINC00554-201ENST00000564841 TMX1Q9H3N1 280 aa19.22■□□□□ 0.67
LINC00554-201ENST00000564841 ATP6V1DQ9Y5K8 247 aa19.22■□□□□ 0.67
LINC00554-201ENST00000564841 LRRC8AQ8IWT6 810 aa19.22■□□□□ 0.67
LINC00554-201ENST00000564841 TCEANC2Q96MN5 208 aa19.22■□□□□ 0.67
LINC00554-201ENST00000564841 SKILP12757 684 aa19.21■□□□□ 0.67
LINC00554-201ENST00000564841 FEZ2Q9UHY8 353 aaPredicted RBP19.21■□□□□ 0.67
LINC00554-201ENST00000564841 ZNF335Q9H4Z2 1342 aaPredicted RBP19.21■□□□□ 0.67
LINC00554-201ENST00000564841 NR1I2O75469 434 aa19.21■□□□□ 0.67
LINC00554-201ENST00000564841 PLEKHO1Q53GL0 409 aaPredicted RBP19.21■□□□□ 0.67
LINC00554-201ENST00000564841 BTBD11A6QL63 1104 aa19.2■□□□□ 0.66
LINC00554-201ENST00000564841 PTPRCP08575 1304 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms