RNA–Protein interactions for RNA: ENST00000564255.5

CHD9-209, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 5

Gene CHD9, Length 2,896 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-209ENST00000564255 SF3A1Q15459 793 aaKnown RBP4.08□□□□□ -1.76
CHD9-209ENST00000564255 NBPF10Q6P3W6 841 aaKnown RBP4.08□□□□□ -1.76
CHD9-209ENST00000564255 TRIM67Q6ZTA4 783 aa4.08□□□□□ -1.76
CHD9-209ENST00000564255 ZIC5Q96T25 663 aa4.08□□□□□ -1.76
CHD9-209ENST00000564255 TINF2Q9BSI4 451 aa4.08□□□□□ -1.76
CHD9-209ENST00000564255 CPNE3O75131 537 aaKnown RBP4.07□□□□□ -1.76
CHD9-209ENST00000564255 TATP17735 454 aaPredicted RBP4.07□□□□□ -1.76
CHD9-209ENST00000564255 ATP4AP20648 1035 aa4.07□□□□□ -1.76
CHD9-209ENST00000564255 IDH3AP50213 366 aa4.07□□□□□ -1.76
CHD9-209ENST00000564255 ARSDP51689 593 aa4.07□□□□□ -1.76
CHD9-209ENST00000564255 PTPN12Q05209 780 aaKnown RBP4.07□□□□□ -1.76
CHD9-209ENST00000564255 ZNF280CQ8ND82 737 aa4.07□□□□□ -1.76
CHD9-209ENST00000564255 INSM2Q96T92 566 aaPredicted RBP4.07□□□□□ -1.76
CHD9-209ENST00000564255 ZFYVE28Q9HCC9 887 aa4.07□□□□□ -1.76
CHD9-209ENST00000564255 A6NHS1 94 aa4.07□□□□□ -1.76
CHD9-209ENST00000564255 CTSOP43234 321 aaPredicted RBP4.07□□□□□ -1.76
CHD9-209ENST00000564255 C9orf131Q5VYM1 1079 aa4.07□□□□□ -1.76
CHD9-209ENST00000564255 LINC00528Q8N1L1 170 aa4.07□□□□□ -1.76
CHD9-209ENST00000564255 RNF217Q8TC41 542 aa4.07□□□□□ -1.76
CHD9-209ENST00000564255 POLMQ9NP87 494 aaPredicted RBP4.07□□□□□ -1.76
CHD9-209ENST00000564255 KCNMB2Q9Y691 235 aa4.07□□□□□ -1.76
CHD9-209ENST00000564255 POTECB2RU33 542 aa4.06□□□□□ -1.76
CHD9-209ENST00000564255 GRNP28799 593 aaKnown RBP4.06□□□□□ -1.76
CHD9-209ENST00000564255 ZNF76P36508 570 aa4.06□□□□□ -1.76
CHD9-209ENST00000564255 HSH2DQ96JZ2 352 aa4.06□□□□□ -1.76
CHD9-209ENST00000564255 SPG7Q9UQ90 795 aa4.06□□□□□ -1.76
CHD9-209ENST00000564255 TNFRSF21O75509 655 aa4.06□□□□□ -1.76
CHD9-209ENST00000564255 EIF4BP23588 611 aaKnown RBP4.06□□□□□ -1.76
CHD9-209ENST00000564255 MSX1P28360 303 aa4.06□□□□□ -1.76
CHD9-209ENST00000564255 PHKA2P46019 1235 aa4.06□□□□□ -1.76
CHD9-209ENST00000564255 C8orf34Q49A92 452 aa4.06□□□□□ -1.76
CHD9-209ENST00000564255 NT5DC4Q86YG4 428 aa4.06□□□□□ -1.76
CHD9-209ENST00000564255 UBXN4Q92575 508 aa4.06□□□□□ -1.76
CHD9-209ENST00000564255 CRELD1Q96HD1 420 aa4.06□□□□□ -1.76
CHD9-209ENST00000564255 C12orf49Q9H741 205 aa4.06□□□□□ -1.76
CHD9-209ENST00000564255 FOXD3Q9UJU5 478 aaPredicted RBP4.06□□□□□ -1.76
CHD9-209ENST00000564255 POU4F2Q12837 409 aa4.05□□□□□ -1.76
CHD9-209ENST00000564255 TRIP4Q15650 581 aaPredicted RBP4.05□□□□□ -1.76
CHD9-209ENST00000564255 USPL1Q5W0Q7 1092 aa4.05□□□□□ -1.76
CHD9-209ENST00000564255 PDE12Q6L8Q7 609 aaKnown RBP4.05□□□□□ -1.76
CHD9-209ENST00000564255 BTLAQ7Z6A9 289 aa4.05□□□□□ -1.76
CHD9-209ENST00000564255 SNX29Q8TEQ0 813 aa4.05□□□□□ -1.76
CHD9-209ENST00000564255 CCDC74AQ96AQ1 378 aa4.05□□□□□ -1.76
CHD9-209ENST00000564255 FNDC3AQ9Y2H6 1198 aaKnown RBP4.05□□□□□ -1.76
CHD9-209ENST00000564255 USP31Q70CQ4 1352 aa4.05□□□□□ -1.76
CHD9-209ENST00000564255 TNFRSF10AO00220 468 aa4.05□□□□□ -1.76
CHD9-209ENST00000564255 EGFRP00533 1210 aa4.05□□□□□ -1.76
CHD9-209ENST00000564255 GALNT12Q8IXK2 581 aa4.05□□□□□ -1.76
CHD9-209ENST00000564255 C11orf16Q9NQ32 467 aa4.05□□□□□ -1.76
CHD9-209ENST00000564255 RTCBQ9Y3I0 505 aaKnown RBP4.05□□□□□ -1.76
CHD9-209ENST00000564255 LYSMD3Q7Z3D4 306 aa4.04□□□□□ -1.76
CHD9-209ENST00000564255 TTC16Q8NEE8 873 aa4.04□□□□□ -1.76
CHD9-209ENST00000564255 AIDAQ96BJ3 306 aa4.04□□□□□ -1.76
CHD9-209ENST00000564255 CHRDQ9H2X0 955 aa4.04□□□□□ -1.76
CHD9-209ENST00000564255 NLRP2Q9NX02 1062 aa4.04□□□□□ -1.76
CHD9-209ENST00000564255 TMEM63CQ9P1W3 806 aa4.04□□□□□ -1.76
CHD9-209ENST00000564255 A0A1B0GTH6 734 aa4.04□□□□□ -1.76
CHD9-209ENST00000564255 CAPN5O15484 640 aaPredicted RBP4.04□□□□□ -1.76
CHD9-209ENST00000564255 OSBPL7Q9BZF2 842 aa4.04□□□□□ -1.76
CHD9-209ENST00000564255 CRISPLD1Q9H336 500 aa4.04□□□□□ -1.76
CHD9-209ENST00000564255 DDX41Q9UJV9 622 aaKnown RBP4.04□□□□□ -1.76
CHD9-209ENST00000564255 EPB41L3Q9Y2J2 1087 aaPredicted RBP4.04□□□□□ -1.76
CHD9-209ENST00000564255 USP20Q9Y2K6 914 aa4.04□□□□□ -1.76
CHD9-209ENST00000564255 UBAP1LF5GYI3 381 aa4.04□□□□□ -1.76
CHD9-209ENST00000564255 ST13P50502 369 aaKnown RBP4.04□□□□□ -1.76
CHD9-209ENST00000564255 LARP7Q4G0J3 582 aaKnown RBP eCLIP4.04□□□□□ -1.76
CHD9-209ENST00000564255 ZNF438Q7Z4V0 828 aa4.04□□□□□ -1.76
CHD9-209ENST00000564255 GMLQ99445 158 aa4.04□□□□□ -1.76
CHD9-209ENST00000564255 SOS2Q07890 1332 aaPredicted RBP4.03□□□□□ -1.76
CHD9-209ENST00000564255 UPP2O95045 317 aa4.03□□□□□ -1.76
CHD9-209ENST00000564255 IRS1P35568 1242 aa4.03□□□□□ -1.76
CHD9-209ENST00000564255 TYRO3Q06418 890 aa4.03□□□□□ -1.76
CHD9-209ENST00000564255 SAMD5Q5TGI4 173 aa4.03□□□□□ -1.76
CHD9-209ENST00000564255 PI16Q6UXB8 463 aa4.03□□□□□ -1.76
CHD9-209ENST00000564255 LRRC69Q6ZNQ3 347 aa4.03□□□□□ -1.76
CHD9-209ENST00000564255 EPS8L3Q8TE67 593 aaKnown RBP4.03□□□□□ -1.76
CHD9-209ENST00000564255 ACBD3Q9H3P7 528 aa4.03□□□□□ -1.76
CHD9-209ENST00000564255 CCSER2Q9H7U1 834 aa4.03□□□□□ -1.76
CHD9-209ENST00000564255 ELP3Q9H9T3 547 aa4.03□□□□□ -1.76
CHD9-209ENST00000564255 TIMMDC1Q9NPL8 285 aa4.03□□□□□ -1.76
CHD9-209ENST00000564255 A0A1W2PNR3 127 aa4.03□□□□□ -1.76
CHD9-209ENST00000564255 VEGFBP49765 207 aa4.03□□□□□ -1.76
CHD9-209ENST00000564255 MRPL14Q6P1L8 145 aaKnown RBP4.03□□□□□ -1.76
CHD9-209ENST00000564255 BICDL1Q6ZP65 573 aa4.03□□□□□ -1.76
CHD9-209ENST00000564255 ZNF654Q8IZM8 581 aa4.03□□□□□ -1.76
CHD9-209ENST00000564255 CMTR1Q8N1G2 835 aaKnown RBP4.03□□□□□ -1.76
CHD9-209ENST00000564255 SRA1Q9HD15 236 aaKnown RBP4.03□□□□□ -1.76
CHD9-209ENST00000564255 NEUROD4Q9HD90 331 aa4.03□□□□□ -1.76
CHD9-209ENST00000564255 FAM8A1Q9UBU6 413 aa4.03□□□□□ -1.76
CHD9-209ENST00000564255 PHACTR2O75167 634 aa4.02□□□□□ -1.77
CHD9-209ENST00000564255 AVPP01185 164 aa4.02□□□□□ -1.77
CHD9-209ENST00000564255 BMP2P12643 396 aa4.02□□□□□ -1.77
CHD9-209ENST00000564255 KIAA0319Q5VV43 1072 aa4.02□□□□□ -1.77
CHD9-209ENST00000564255 PRICKLE2Q7Z3G6 844 aa4.02□□□□□ -1.77
CHD9-209ENST00000564255 PMEPA1Q969W9 287 aa4.02□□□□□ -1.77
CHD9-209ENST00000564255 ARMC5Q96C12 935 aa4.02□□□□□ -1.77
CHD9-209ENST00000564255 SRCIN1Q9C0H9 1055 aa4.02□□□□□ -1.77
CHD9-209ENST00000564255 SUV39H2Q9H5I1 410 aa4.02□□□□□ -1.77
CHD9-209ENST00000564255 CNTN3Q9P232 1028 aa4.02□□□□□ -1.77
CHD9-209ENST00000564255 EPB42P16452 691 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms