RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 RPAP2Q8IXW5 612 aaPredicted RBP15.88■□□□□ 0.13
CLK3-206ENST00000562078 SPC24Q8NBT2 197 aa15.88■□□□□ 0.13
CLK3-206ENST00000562078 COL14A1Q05707 1796 aaKnown RBP15.87■□□□□ 0.13
CLK3-206ENST00000562078 TPRNQ4KMQ1 711 aa15.87■□□□□ 0.13
CLK3-206ENST00000562078 AKAP4Q5JQC9 854 aa15.87■□□□□ 0.13
CLK3-206ENST00000562078 HDGFL1Q5TGJ6 251 aa15.87■□□□□ 0.13
CLK3-206ENST00000562078 MPRIPQ6WCQ1 1025 aa15.87■□□□□ 0.13
CLK3-206ENST00000562078 MEGF6O75095 1541 aa15.87■□□□□ 0.13
CLK3-206ENST00000562078 SMARCA5O60264 1052 aaPredicted RBP15.87■□□□□ 0.13
CLK3-206ENST00000562078 AP5Z1O43299 807 aa15.86■□□□□ 0.13
CLK3-206ENST00000562078 KDM4AO75164 1064 aa15.86■□□□□ 0.13
CLK3-206ENST00000562078 PHF14O94880 888 aa15.86■□□□□ 0.13
CLK3-206ENST00000562078 TEFQ10587 303 aa15.86■□□□□ 0.13
CLK3-206ENST00000562078 SYCP1Q15431 976 aa15.86■□□□□ 0.13
CLK3-206ENST00000562078 USP26Q9BXU7 913 aa15.86■□□□□ 0.13
CLK3-206ENST00000562078 GSPT1P15170 499 aaKnown RBP15.86■□□□□ 0.13
CLK3-206ENST00000562078 SCN11AQ9UI33 1791 aa15.86■□□□□ 0.13
CLK3-206ENST00000562078 PARP4Q9UKK3 1724 aaKnown RBP15.86■□□□□ 0.13
CLK3-206ENST00000562078 APBB1O00213 710 aa15.85■□□□□ 0.13
CLK3-206ENST00000562078 ST18O60284 1047 aa15.85■□□□□ 0.13
CLK3-206ENST00000562078 C16orf45Q96MC5 204 aaPredicted RBP15.85■□□□□ 0.13
CLK3-206ENST00000562078 PXDNLA1KZ92 1463 aa15.85■□□□□ 0.13
CLK3-206ENST00000562078 KCNQ3O43525 872 aa15.85■□□□□ 0.13
CLK3-206ENST00000562078 HNRNPH2P55795 449 aaKnown RBP15.85■□□□□ 0.13
CLK3-206ENST00000562078 EIF4A1P60842 406 aaKnown RBP15.85■□□□□ 0.13
CLK3-206ENST00000562078 BTG4Q9NY30 223 aa15.85■□□□□ 0.13
CLK3-206ENST00000562078 ADAMTS7Q9UKP4 1686 aa15.85■□□□□ 0.13
CLK3-206ENST00000562078 KMT5BQ4FZB7 885 aa15.84■□□□□ 0.13
CLK3-206ENST00000562078 CERKQ8TCT0 537 aa15.84■□□□□ 0.13
CLK3-206ENST00000562078 EIF2S2P20042 333 aaKnown RBP15.84■□□□□ 0.13
CLK3-206ENST00000562078 SPG7Q9UQ90 795 aa15.84■□□□□ 0.13
CLK3-206ENST00000562078 PKD1L3Q7Z443 1732 aa15.83■□□□□ 0.13
CLK3-206ENST00000562078 BTBD11A6QL63 1104 aa15.83■□□□□ 0.12
CLK3-206ENST00000562078 SMTNL1A8MU46 457 aa15.83■□□□□ 0.12
CLK3-206ENST00000562078 ADAMTS2O95450 1211 aa15.83■□□□□ 0.12
CLK3-206ENST00000562078 LARP1Q6PKG0 1096 aaKnown RBP15.83■□□□□ 0.12
CLK3-206ENST00000562078 PLEKHM2Q8IWE5 1019 aa15.83■□□□□ 0.12
CLK3-206ENST00000562078 HOMEZQ8IX15 550 aa15.83■□□□□ 0.12
CLK3-206ENST00000562078 TSPYL1Q9H0U9 437 aa15.83■□□□□ 0.12
CLK3-206ENST00000562078 PHAXQ9H814 394 aaKnown RBP15.83■□□□□ 0.12
CLK3-206ENST00000562078 OVOS2A0A0G2JMS6 1433 aa15.83■□□□□ 0.12
CLK3-206ENST00000562078 NUTM2BA6NNL0 878 aaPredicted RBP15.83■□□□□ 0.12
CLK3-206ENST00000562078 NUTM2EB1AL46 878 aaPredicted RBP15.83■□□□□ 0.12
CLK3-206ENST00000562078 RNMTO43148 476 aaKnown RBP15.83■□□□□ 0.12
CLK3-206ENST00000562078 BRD1O95696 1058 aa15.83■□□□□ 0.12
CLK3-206ENST00000562078 RAD51AP2Q09MP3 1159 aa15.83■□□□□ 0.12
CLK3-206ENST00000562078 NUTM2AQ8IVF1 878 aaPredicted RBP15.83■□□□□ 0.12
CLK3-206ENST00000562078 PLCH1Q4KWH8 1693 aa15.82■□□□□ 0.12
CLK3-206ENST00000562078 TULP1O00294 542 aaPredicted RBP15.82■□□□□ 0.12
CLK3-206ENST00000562078 HMMRO75330 724 aa15.82■□□□□ 0.12
CLK3-206ENST00000562078 GNAI2P04899 355 aa15.82■□□□□ 0.12
CLK3-206ENST00000562078 C16orf71Q8IYS4 520 aaPredicted RBP15.82■□□□□ 0.12
CLK3-206ENST00000562078 OTUD7AQ8TE49 926 aaPredicted RBP15.82■□□□□ 0.12
CLK3-206ENST00000562078 USP48Q86UV5 1035 aa15.82■□□□□ 0.12
CLK3-206ENST00000562078 TUBGCP6Q96RT7 1819 aa15.81■□□□□ 0.12
CLK3-206ENST00000562078 CARD10Q9BWT7 1032 aa15.81■□□□□ 0.12
CLK3-206ENST00000562078 CHPF2Q9P2E5 772 aa15.81■□□□□ 0.12
CLK3-206ENST00000562078 PTGS1P23219 599 aa15.8■□□□□ 0.12
CLK3-206ENST00000562078 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.8■□□□□ 0.12
CLK3-206ENST00000562078 V9GYY5 206 aaPredicted RBP15.8■□□□□ 0.12
CLK3-206ENST00000562078 GNAI3P08754 354 aa15.8■□□□□ 0.12
CLK3-206ENST00000562078 HOXB7P09629 217 aa15.8■□□□□ 0.12
CLK3-206ENST00000562078 TNNT3P45378 269 aaPredicted RBP15.8■□□□□ 0.12
CLK3-206ENST00000562078 RBM6P78332 1123 aaKnown RBP15.8■□□□□ 0.12
CLK3-206ENST00000562078 CCDC112Q8NEF3 446 aa15.8■□□□□ 0.12
CLK3-206ENST00000562078 FAM53CQ9NYF3 392 aa15.8■□□□□ 0.12
CLK3-206ENST00000562078 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.8■□□□□ 0.12
CLK3-206ENST00000562078 C5P01031 1676 aa15.8■□□□□ 0.12
CLK3-206ENST00000562078 TNNT1P13805 278 aa15.79■□□□□ 0.12
CLK3-206ENST00000562078 CYP2C19P33261 490 aa15.79■□□□□ 0.12
CLK3-206ENST00000562078 TMX1Q9H3N1 280 aa15.79■□□□□ 0.12
CLK3-206ENST00000562078 RSPH14Q9UHP6 348 aa15.79■□□□□ 0.12
CLK3-206ENST00000562078 PLEKHG2Q9H7P9 1386 aa15.79■□□□□ 0.12
CLK3-206ENST00000562078 CCDC183Q5T5S1 534 aa15.79■□□□□ 0.12
CLK3-206ENST00000562078 TTC22Q5TAA0 569 aa15.79■□□□□ 0.12
CLK3-206ENST00000562078 IFNL2Q8IZJ0 200 aa15.79■□□□□ 0.12
CLK3-206ENST00000562078 RNF216Q9NWF9 866 aaPredicted RBP15.79■□□□□ 0.12
CLK3-206ENST00000562078 ANXA1P04083 346 aa15.78■□□□□ 0.12
CLK3-206ENST00000562078 IL2RBP14784 551 aa15.78■□□□□ 0.12
CLK3-206ENST00000562078 PHKG2P15735 406 aa15.78■□□□□ 0.12
CLK3-206ENST00000562078 ZNF397Q8NF99 534 aaPredicted RBP15.78■□□□□ 0.12
CLK3-206ENST00000562078 TMX3Q96JJ7 454 aa15.78■□□□□ 0.12
CLK3-206ENST00000562078 EXOC6BQ9Y2D4 811 aa15.78■□□□□ 0.12
CLK3-206ENST00000562078 LRRFIP2Q9Y608 721 aaKnown RBP15.78■□□□□ 0.12
CLK3-206ENST00000562078 TPM3P06753 285 aa15.77■□□□□ 0.12
CLK3-206ENST00000562078 LRMPQ12912 555 aa15.77■□□□□ 0.12
CLK3-206ENST00000562078 FBXO38Q6PIJ6 1188 aa15.77■□□□□ 0.12
CLK3-206ENST00000562078 PNMA6EA0A0J9YXQ4 647 aa15.77■□□□□ 0.11
CLK3-206ENST00000562078 SAMD1Q6SPF0 538 aaPredicted RBP15.77■□□□□ 0.11
CLK3-206ENST00000562078 NOL10Q9BSC4 688 aaKnown RBP15.77■□□□□ 0.11
CLK3-206ENST00000562078 USP44Q9H0E7 712 aa15.77■□□□□ 0.11
CLK3-206ENST00000562078 EFCC1Q9HA90 598 aa15.77■□□□□ 0.11
CLK3-206ENST00000562078 UBTFL1P0CB47 393 aaPredicted RBP15.76■□□□□ 0.11
CLK3-206ENST00000562078 NOL8Q76FK4 1167 aaKnown RBP15.76■□□□□ 0.11
CLK3-206ENST00000562078 ZCRB1Q8TBF4 217 aaKnown RBP15.76■□□□□ 0.11
CLK3-206ENST00000562078 ZNF592Q92610 1267 aa15.76■□□□□ 0.11
CLK3-206ENST00000562078 GEMIN8Q9NWZ8 242 aaKnown RBP15.76■□□□□ 0.11
CLK3-206ENST00000562078 KDM6AO15550 1401 aaPredicted RBP15.75■□□□□ 0.11
CLK3-206ENST00000562078 JCADQ9P266 1359 aa15.75■□□□□ 0.11
CLK3-206ENST00000562078 LOC102724159A0A0B4J2E5 919 aa15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms