RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 MRPL50Q8N5N7 158 aaKnown RBP16.58■□□□□ 0.24
NEDD8-208ENST00000560427 SSH1Q8WYL5 1049 aa16.58■□□□□ 0.24
NEDD8-208ENST00000560427 PIM2Q9P1W9 311 aa16.58■□□□□ 0.24
NEDD8-208ENST00000560427 SH3TC1Q8TE82 1336 aa16.58■□□□□ 0.24
NEDD8-208ENST00000560427 ABCC12Q96J65 1359 aa16.58■□□□□ 0.24
NEDD8-208ENST00000560427 BRCA1P38398 1863 aaKnown RBP16.58■□□□□ 0.24
NEDD8-208ENST00000560427 N4BP2Q86UW6 1770 aaPredicted RBP16.57■□□□□ 0.24
NEDD8-208ENST00000560427 HSP90B1P14625 803 aaKnown RBP16.57■□□□□ 0.24
NEDD8-208ENST00000560427 SLC10A5Q5PT55 438 aa16.57■□□□□ 0.24
NEDD8-208ENST00000560427 NUTM1Q86Y26 1132 aa16.57■□□□□ 0.24
NEDD8-208ENST00000560427 C2CD5Q86YS7 1000 aa16.57■□□□□ 0.24
NEDD8-208ENST00000560427 DNAAF4Q8WXU2 420 aa16.57■□□□□ 0.24
NEDD8-208ENST00000560427 MYD88Q99836 296 aa16.57■□□□□ 0.24
NEDD8-208ENST00000560427 SMC4Q9NTJ3 1288 aa16.57■□□□□ 0.24
NEDD8-208ENST00000560427 COL11A2P13942 1736 aaPredicted RBP16.56■□□□□ 0.24
NEDD8-208ENST00000560427 ATP5J2-PTCD1G3V325 749 aa16.56■□□□□ 0.24
NEDD8-208ENST00000560427 GRIN3BO60391 1043 aa16.56■□□□□ 0.24
NEDD8-208ENST00000560427 KCNA3P22001 575 aa16.56■□□□□ 0.24
NEDD8-208ENST00000560427 CHRNA5P30532 468 aa16.56■□□□□ 0.24
NEDD8-208ENST00000560427 GPR162Q16538 588 aa16.56■□□□□ 0.24
NEDD8-208ENST00000560427 ERFEQ4G0M1 354 aa16.56■□□□□ 0.24
NEDD8-208ENST00000560427 STYK1Q6J9G0 422 aa16.56■□□□□ 0.24
NEDD8-208ENST00000560427 CWC25Q9NXE8 425 aaPredicted RBP16.56■□□□□ 0.24
NEDD8-208ENST00000560427 TRMT112Q9UI30 125 aaKnown RBP16.56■□□□□ 0.24
NEDD8-208ENST00000560427 SRGNP10124 158 aa16.55■□□□□ 0.24
NEDD8-208ENST00000560427 CRY2Q49AN0 593 aa16.55■□□□□ 0.24
NEDD8-208ENST00000560427 DALRD3Q5D0E6 543 aaKnown RBP16.55■□□□□ 0.24
NEDD8-208ENST00000560427 CCDC24Q8N4L8 307 aa16.55■□□□□ 0.24
NEDD8-208ENST00000560427 ZBTB38Q8NAP3 1195 aaPredicted RBP16.55■□□□□ 0.24
NEDD8-208ENST00000560427 LINS1Q8NG48 757 aa16.55■□□□□ 0.24
NEDD8-208ENST00000560427 MASTLQ96GX5 879 aa16.55■□□□□ 0.24
NEDD8-208ENST00000560427 TNRC6CQ9HCJ0 1690 aaKnown RBP16.55■□□□□ 0.24
NEDD8-208ENST00000560427 KIF16BQ96L93 1317 aa16.54■□□□□ 0.24
NEDD8-208ENST00000560427 IGKV5-2P06315 115 aa16.54■□□□□ 0.24
NEDD8-208ENST00000560427 NPR1P16066 1061 aa16.54■□□□□ 0.24
NEDD8-208ENST00000560427 RARSP54136 660 aaKnown RBP16.54■□□□□ 0.24
NEDD8-208ENST00000560427 TTLL6Q8N841 843 aa16.54■□□□□ 0.24
NEDD8-208ENST00000560427 CNKSR1Q969H4 720 aa16.54■□□□□ 0.24
NEDD8-208ENST00000560427 NLRP3Q96P20 1036 aa16.54■□□□□ 0.24
NEDD8-208ENST00000560427 NEURL1BA8MQ27 555 aa16.53■□□□□ 0.24
NEDD8-208ENST00000560427 PCCAP05165 728 aaPredicted RBP16.53■□□□□ 0.24
NEDD8-208ENST00000560427 PELP1Q8IZL8 1130 aaKnown RBP16.53■□□□□ 0.24
NEDD8-208ENST00000560427 LAMB2P55268 1798 aa16.53■□□□□ 0.24
NEDD8-208ENST00000560427 YBX3P16989 372 aaKnown RBP eCLIP16.52■□□□□ 0.24
NEDD8-208ENST00000560427 BCL2L13Q9BXK5 485 aa16.52■□□□□ 0.24
NEDD8-208ENST00000560427 BCS1LQ9Y276 419 aa16.52■□□□□ 0.24
NEDD8-208ENST00000560427 ARFGEF1Q9Y6D6 1849 aa16.52■□□□□ 0.23
NEDD8-208ENST00000560427 CDHR2Q9BYE9 1310 aa16.51■□□□□ 0.23
NEDD8-208ENST00000560427 ALDH1B1P30837 517 aa16.51■□□□□ 0.23
NEDD8-208ENST00000560427 HOXA10P31260 410 aaPredicted RBP16.51■□□□□ 0.23
NEDD8-208ENST00000560427 BEND3Q5T5X7 828 aa16.51■□□□□ 0.23
NEDD8-208ENST00000560427 ZNF622Q969S3 477 aaKnown RBP eCLIP16.51■□□□□ 0.23
NEDD8-208ENST00000560427 FAM89AQ96GI7 184 aa16.51■□□□□ 0.23
NEDD8-208ENST00000560427 F6X3S4 739 aa16.5■□□□□ 0.23
NEDD8-208ENST00000560427 IRS4O14654 1257 aaPredicted RBP16.5■□□□□ 0.23
NEDD8-208ENST00000560427 ALDH1L1O75891 902 aa16.5■□□□□ 0.23
NEDD8-208ENST00000560427 GCKRQ14397 625 aa16.5■□□□□ 0.23
NEDD8-208ENST00000560427 CWF19L2Q2TBE0 894 aaKnown RBP16.5■□□□□ 0.23
NEDD8-208ENST00000560427 ARHGAP45Q92619 1136 aa16.5■□□□□ 0.23
NEDD8-208ENST00000560427 RPGRQ92834 1020 aaKnown RBP16.5■□□□□ 0.23
NEDD8-208ENST00000560427 API5Q9BZZ5 524 aaKnown RBP16.5■□□□□ 0.23
NEDD8-208ENST00000560427 SOGA3Q5TF21 947 aa16.49■□□□□ 0.23
NEDD8-208ENST00000560427 DDX60Q8IY21 1712 aaKnown RBP16.49■□□□□ 0.23
NEDD8-208ENST00000560427 RBM17Q96I25 401 aaKnown RBP16.49■□□□□ 0.23
NEDD8-208ENST00000560427 CRAMP1Q96RY5 1269 aa16.49■□□□□ 0.23
NEDD8-208ENST00000560427 IPO8O15397 1037 aaKnown RBP16.48■□□□□ 0.23
NEDD8-208ENST00000560427 HCLS1P14317 486 aaPredicted RBP16.48■□□□□ 0.23
NEDD8-208ENST00000560427 SF3B3Q15393 1217 aaKnown RBP16.48■□□□□ 0.23
NEDD8-208ENST00000560427 PRPF40BQ6NWY9 871 aaKnown RBP16.48■□□□□ 0.23
NEDD8-208ENST00000560427 SRCIN1Q9C0H9 1055 aa16.48■□□□□ 0.23
NEDD8-208ENST00000560427 H7C1W4 665 aa16.47■□□□□ 0.23
NEDD8-208ENST00000560427 PDE8AO60658 829 aa16.47■□□□□ 0.23
NEDD8-208ENST00000560427 SLC4A10Q6U841 1118 aa16.47■□□□□ 0.23
NEDD8-208ENST00000560427 SYNE4Q8N205 404 aa16.47■□□□□ 0.23
NEDD8-208ENST00000560427 WWC3Q9ULE0 1092 aa16.47■□□□□ 0.23
NEDD8-208ENST00000560427 NOB1Q9ULX3 412 aaKnown RBP16.47■□□□□ 0.23
NEDD8-208ENST00000560427 C3orf67Q6ZVT6 689 aa16.46■□□□□ 0.23
NEDD8-208ENST00000560427 UBE3BQ7Z3V4 1068 aa16.46■□□□□ 0.23
NEDD8-208ENST00000560427 PLA2G12BQ9BX93 195 aa16.46■□□□□ 0.23
NEDD8-208ENST00000560427 GRM8O00222 908 aa16.45■□□□□ 0.22
NEDD8-208ENST00000560427 CCT4P50991 539 aaKnown RBP16.45■□□□□ 0.22
NEDD8-208ENST00000560427 GRIPAP1Q4V328 841 aa16.45■□□□□ 0.22
NEDD8-208ENST00000560427 DDX46Q7L014 1031 aaKnown RBP16.45■□□□□ 0.22
NEDD8-208ENST00000560427 RTL9Q8NET4 1388 aa16.44■□□□□ 0.22
NEDD8-208ENST00000560427 CASP7P55210 303 aa16.44■□□□□ 0.22
NEDD8-208ENST00000560427 CTSWP56202 376 aa16.44■□□□□ 0.22
NEDD8-208ENST00000560427 CCDC152Q4G0S7 254 aa16.44■□□□□ 0.22
NEDD8-208ENST00000560427 RTL5Q5HYW3 569 aaPredicted RBP16.44■□□□□ 0.22
NEDD8-208ENST00000560427 CC2D2BQ6DHV5 1058 aa16.44■□□□□ 0.22
NEDD8-208ENST00000560427 TMC4Q7Z404 712 aa16.44■□□□□ 0.22
NEDD8-208ENST00000560427 ABCC4O15439 1325 aa16.44■□□□□ 0.22
NEDD8-208ENST00000560427 BCAR3O75815 825 aa16.43■□□□□ 0.22
NEDD8-208ENST00000560427 BBOX1O75936 387 aa16.43■□□□□ 0.22
NEDD8-208ENST00000560427 GRAPQ13588 217 aa16.43■□□□□ 0.22
NEDD8-208ENST00000560427 CCDC93Q567U6 631 aa16.43■□□□□ 0.22
NEDD8-208ENST00000560427 ATF7IPQ6VMQ6 1270 aa16.43■□□□□ 0.22
NEDD8-208ENST00000560427 GRAPLQ8TC17 118 aaPredicted RBP16.43■□□□□ 0.22
NEDD8-208ENST00000560427 C7orf43Q8WVR3 580 aa16.43■□□□□ 0.22
NEDD8-208ENST00000560427 C9orf78Q9NZ63 289 aaPredicted RBP16.43■□□□□ 0.22
NEDD8-208ENST00000560427 UTYO14607 1347 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 96.4 ms