RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 TAF1LQ8IZX4 1826 aa13.98□□□□□ -0.17
USP3-218ENST00000560202 SSH3Q8TE77 659 aa13.98□□□□□ -0.17
USP3-218ENST00000560202 BICC1Q9H694 974 aaKnown RBP13.98□□□□□ -0.17
USP3-218ENST00000560202 NARFQ9UHQ1 456 aa13.98□□□□□ -0.17
USP3-218ENST00000560202 ZNF652Q9Y2D9 606 aa13.98□□□□□ -0.17
USP3-218ENST00000560202 AFDNP55196 1824 aaKnown RBP13.97□□□□□ -0.17
USP3-218ENST00000560202 RGL2O15211 777 aa13.97□□□□□ -0.17
USP3-218ENST00000560202 PCCAP05165 728 aaPredicted RBP13.97□□□□□ -0.17
USP3-218ENST00000560202 EPHA10Q5JZY3 1008 aa13.97□□□□□ -0.17
USP3-218ENST00000560202 TRAPPC3LQ5T215 181 aa13.97□□□□□ -0.17
USP3-218ENST00000560202 CLEC4GQ6UXB4 293 aa13.97□□□□□ -0.17
USP3-218ENST00000560202 ARHGEF1Q92888 912 aaKnown RBP13.97□□□□□ -0.17
USP3-218ENST00000560202 UBN2Q6ZU65 1347 aa13.96□□□□□ -0.17
USP3-218ENST00000560202 NUCB1Q02818 461 aa13.96□□□□□ -0.17
USP3-218ENST00000560202 RTL5Q5HYW3 569 aaPredicted RBP13.96□□□□□ -0.17
USP3-218ENST00000560202 ZBTB38Q8NAP3 1195 aaPredicted RBP13.96□□□□□ -0.17
USP3-218ENST00000560202 ZPR1O75312 459 aa13.95□□□□□ -0.18
USP3-218ENST00000560202 PHF14O94880 888 aa13.95□□□□□ -0.18
USP3-218ENST00000560202 ANKRD45Q5TZF3 282 aa13.95□□□□□ -0.18
USP3-218ENST00000560202 USPL1Q5W0Q7 1092 aa13.95□□□□□ -0.18
USP3-218ENST00000560202 TNS1Q9HBL0 1735 aaKnown RBP13.95□□□□□ -0.18
USP3-218ENST00000560202 RFC4P35249 363 aa13.95□□□□□ -0.18
USP3-218ENST00000560202 FOXO4P98177 505 aa13.95□□□□□ -0.18
USP3-218ENST00000560202 RABL6Q3YEC7 729 aaPredicted RBP13.95□□□□□ -0.18
USP3-218ENST00000560202 PARP10Q53GL7 1025 aa13.95□□□□□ -0.18
USP3-218ENST00000560202 CHD1LQ86WJ1 897 aa13.95□□□□□ -0.18
USP3-218ENST00000560202 FAM89AQ96GI7 184 aa13.95□□□□□ -0.18
USP3-218ENST00000560202 BCL2L12Q9HB09 334 aa13.95□□□□□ -0.18
USP3-218ENST00000560202 SRP68Q9UHB9 627 aaKnown RBP13.95□□□□□ -0.18
USP3-218ENST00000560202 TRMT112Q9UI30 125 aaKnown RBP13.95□□□□□ -0.18
USP3-218ENST00000560202 NIP7Q9Y221 180 aaKnown RBP eCLIP13.95□□□□□ -0.18
USP3-218ENST00000560202 NUP98P52948 1817 aa13.94□□□□□ -0.18
USP3-218ENST00000560202 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.94□□□□□ -0.18
USP3-218ENST00000560202 SSFA2P28290 1259 aa13.94□□□□□ -0.18
USP3-218ENST00000560202 RGS3P49796 1198 aa13.94□□□□□ -0.18
USP3-218ENST00000560202 SUSD4Q5VX71 490 aa13.94□□□□□ -0.18
USP3-218ENST00000560202 EXOC6BQ9Y2D4 811 aa13.94□□□□□ -0.18
USP3-218ENST00000560202 ANKRD36CQ5JPF3 1778 aa13.93□□□□□ -0.18
USP3-218ENST00000560202 CDHR2Q9BYE9 1310 aa13.93□□□□□ -0.18
USP3-218ENST00000560202 USP42Q9H9J4 1324 aaKnown RBP13.93□□□□□ -0.18
USP3-218ENST00000560202 LNPKQ9C0E8 428 aa13.93□□□□□ -0.18
USP3-218ENST00000560202 BCORQ6W2J9 1755 aa13.93□□□□□ -0.18
USP3-218ENST00000560202 SURF6O75683 361 aaKnown RBP13.92□□□□□ -0.18
USP3-218ENST00000560202 LMBR1LQ6UX01 489 aa13.92□□□□□ -0.18
USP3-218ENST00000560202 SYNE4Q8N205 404 aa13.92□□□□□ -0.18
USP3-218ENST00000560202 AKT1S1Q96B36 256 aa13.92□□□□□ -0.18
USP3-218ENST00000560202 UTP14AQ9BVJ6 771 aaKnown RBP13.92□□□□□ -0.18
USP3-218ENST00000560202 PLA2G12BQ9BX93 195 aa13.92□□□□□ -0.18
USP3-218ENST00000560202 SCN7AQ01118 1682 aa13.92□□□□□ -0.18
USP3-218ENST00000560202 APBB1O00213 710 aa13.91□□□□□ -0.18
USP3-218ENST00000560202 PDE4AP27815 886 aa13.91□□□□□ -0.18
USP3-218ENST00000560202 EN1Q05925 392 aaPredicted RBP13.91□□□□□ -0.18
USP3-218ENST00000560202 SF3B2Q13435 895 aaKnown RBP13.91□□□□□ -0.18
USP3-218ENST00000560202 ZNF827Q17R98 1081 aa13.91□□□□□ -0.18
USP3-218ENST00000560202 TBC1D9BQ66K14 1250 aa13.91□□□□□ -0.18
USP3-218ENST00000560202 CAMKK2Q96RR4 588 aa13.91□□□□□ -0.18
USP3-218ENST00000560202 ZBTB47Q9UFB7 747 aaPredicted RBP13.91□□□□□ -0.18
USP3-218ENST00000560202 NOP58Q9Y2X3 529 aaKnown RBP13.91□□□□□ -0.18
USP3-218ENST00000560202 RGPD3A6NKT7 1758 aaPredicted RBP13.91□□□□□ -0.18
USP3-218ENST00000560202 RGPD4Q7Z3J3 1758 aa13.91□□□□□ -0.18
USP3-218ENST00000560202 FAM177BA6PVY3 158 aa13.91□□□□□ -0.18
USP3-218ENST00000560202 IRS4O14654 1257 aaPredicted RBP13.91□□□□□ -0.18
USP3-218ENST00000560202 NTSR2O95665 410 aa13.91□□□□□ -0.18
USP3-218ENST00000560202 EZH2Q15910 746 aaKnown RBP13.91□□□□□ -0.18
USP3-218ENST00000560202 HSP90AB4PQ58FF6 505 aa13.91□□□□□ -0.18
USP3-218ENST00000560202 TFCP2L1Q9NZI6 479 aa13.91□□□□□ -0.18
USP3-218ENST00000560202 SH3TC1Q8TE82 1336 aa13.9□□□□□ -0.18
USP3-218ENST00000560202 RAB11FIP3O75154 756 aa13.9□□□□□ -0.18
USP3-218ENST00000560202 RFX5P48382 616 aaPredicted RBP13.9□□□□□ -0.18
USP3-218ENST00000560202 BICDL1Q6ZP65 573 aa13.9□□□□□ -0.18
USP3-218ENST00000560202 SETDB2Q96T68 719 aa13.9□□□□□ -0.18
USP3-218ENST00000560202 LRRCC1Q9C099 1032 aa13.9□□□□□ -0.18
USP3-218ENST00000560202 PA2G4Q9UQ80 394 aaKnown RBP13.9□□□□□ -0.18
USP3-218ENST00000560202 UBR3Q6ZT12 1888 aa13.89□□□□□ -0.19
USP3-218ENST00000560202 SMARCA5O60264 1052 aaPredicted RBP13.89□□□□□ -0.19
USP3-218ENST00000560202 CSF1RP07333 972 aa13.89□□□□□ -0.19
USP3-218ENST00000560202 BAG6P46379 1132 aa13.89□□□□□ -0.19
USP3-218ENST00000560202 CHMP3Q9Y3E7 222 aa13.89□□□□□ -0.19
USP3-218ENST00000560202 PDE8AO60658 829 aa13.88□□□□□ -0.19
USP3-218ENST00000560202 PTPN12Q05209 780 aaKnown RBP13.88□□□□□ -0.19
USP3-218ENST00000560202 COPRSQ9NQ92 184 aa13.88□□□□□ -0.19
USP3-218ENST00000560202 C4AP0C0L4 1744 aa13.88□□□□□ -0.19
USP3-218ENST00000560202 GYS1P13807 737 aa13.88□□□□□ -0.19
USP3-218ENST00000560202 CTSWP56202 376 aa13.88□□□□□ -0.19
USP3-218ENST00000560202 G3BP1Q13283 466 aaKnown RBP eCLIP13.88□□□□□ -0.19
USP3-218ENST00000560202 OS9Q13438 667 aaPredicted RBP13.88□□□□□ -0.19
USP3-218ENST00000560202 NUTM1Q86Y26 1132 aa13.88□□□□□ -0.19
USP3-218ENST00000560202 FLAD1Q8NFF5 587 aa13.88□□□□□ -0.19
USP3-218ENST00000560202 KLHDC4Q8TBB5 520 aa13.88□□□□□ -0.19
USP3-218ENST00000560202 KIF1BPQ96EK5 621 aa13.88□□□□□ -0.19
USP3-218ENST00000560202 HCLS1P14317 486 aaPredicted RBP13.87□□□□□ -0.19
USP3-218ENST00000560202 HSP90B1P14625 803 aaKnown RBP13.87□□□□□ -0.19
USP3-218ENST00000560202 ERC1Q8IUD2 1116 aa13.87□□□□□ -0.19
USP3-218ENST00000560202 C16orf71Q8IYS4 520 aaPredicted RBP13.87□□□□□ -0.19
USP3-218ENST00000560202 TTLL11Q8NHH1 800 aa13.87□□□□□ -0.19
USP3-218ENST00000560202 RHPN1Q8TCX5 695 aa13.87□□□□□ -0.19
USP3-218ENST00000560202 NYXQ9GZU5 481 aa13.87□□□□□ -0.19
USP3-218ENST00000560202 NFIXQ14938 502 aa13.86□□□□□ -0.19
USP3-218ENST00000560202 CCDC57Q2TAC2 916 aa13.86□□□□□ -0.19
USP3-218ENST00000560202 DEFB132Q7Z7B7 95 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms