RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 C11orf57Q6ZUT1 292 aaPredicted RBP13.36□□□□□ -0.27
LDLR-208ENST00000558518 IL17REQ8NFR9 667 aa13.36□□□□□ -0.27
LDLR-208ENST00000558518 DNAAF4Q8WXU2 420 aa13.36□□□□□ -0.27
LDLR-208ENST00000558518 OGFRQ9NZT2 677 aa13.36□□□□□ -0.27
LDLR-208ENST00000558518 STAP2Q9UGK3 403 aa13.36□□□□□ -0.27
LDLR-208ENST00000558518 ARHGEF28Q8N1W1 1705 aaKnown RBP13.36□□□□□ -0.27
LDLR-208ENST00000558518 KIF24Q5T7B8 1368 aa13.36□□□□□ -0.27
LDLR-208ENST00000558518 AOPEPQ8N6M6 819 aa13.36□□□□□ -0.27
LDLR-208ENST00000558518 ZSCAN31Q96LW9 406 aaPredicted RBP13.36□□□□□ -0.27
LDLR-208ENST00000558518 FUCA2Q9BTY2 467 aa13.36□□□□□ -0.27
LDLR-208ENST00000558518 LGR6Q9HBX8 967 aa13.36□□□□□ -0.27
LDLR-208ENST00000558518 A0A0D9SFI3 127 aa13.35□□□□□ -0.27
LDLR-208ENST00000558518 GTF2F1P35269 517 aaKnown RBP eCLIP13.35□□□□□ -0.272e-14■□□□□ 9.4
LDLR-208ENST00000558518 CCDC73Q6ZRK6 1079 aa13.35□□□□□ -0.27
LDLR-208ENST00000558518 PPP6R1Q9UPN7 881 aa13.35□□□□□ -0.27
LDLR-208ENST00000558518 VWDEQ8N2E2 1590 aa13.35□□□□□ -0.27
LDLR-208ENST00000558518 SALL3Q9BXA9 1300 aa13.35□□□□□ -0.27
LDLR-208ENST00000558518 KIF20AO95235 890 aa13.35□□□□□ -0.27
LDLR-208ENST00000558518 MYL6BP14649 208 aa13.35□□□□□ -0.27
LDLR-208ENST00000558518 PDCP20941 246 aa13.35□□□□□ -0.27
LDLR-208ENST00000558518 SH2B1Q9NRF2 756 aaPredicted RBP13.35□□□□□ -0.27
LDLR-208ENST00000558518 PPLO60437 1756 aa13.35□□□□□ -0.27
LDLR-208ENST00000558518 DEPDC5O75140 1603 aa13.35□□□□□ -0.27
LDLR-208ENST00000558518 KINO60870 393 aaKnown RBP13.34□□□□□ -0.27
LDLR-208ENST00000558518 ST3GAL1Q11201 340 aa13.34□□□□□ -0.27
LDLR-208ENST00000558518 SLFNL1Q499Z3 407 aa13.34□□□□□ -0.27
LDLR-208ENST00000558518 VPS53Q5VIR6 699 aa13.34□□□□□ -0.27
LDLR-208ENST00000558518 CCAR1Q8IX12 1150 aaKnown RBP13.34□□□□□ -0.27
LDLR-208ENST00000558518 SCAND2PQ9GZW5 306 aaPredicted RBP13.34□□□□□ -0.27
LDLR-208ENST00000558518 EDC4Q6P2E9 1401 aaKnown RBP13.34□□□□□ -0.27
LDLR-208ENST00000558518 CCDC171Q6TFL3 1326 aa13.34□□□□□ -0.27
LDLR-208ENST00000558518 OTUD7BQ6GQQ9 843 aa13.34□□□□□ -0.27
LDLR-208ENST00000558518 SSH3Q8TE77 659 aa13.34□□□□□ -0.27
LDLR-208ENST00000558518 MAP3K2Q9Y2U5 619 aa13.34□□□□□ -0.27
LDLR-208ENST00000558518 METP08581 1390 aa13.34□□□□□ -0.27
LDLR-208ENST00000558518 SLC27A2O14975 620 aa13.34□□□□□ -0.27
LDLR-208ENST00000558518 RNF20Q5VTR2 975 aa13.34□□□□□ -0.27
LDLR-208ENST00000558518 SEC62Q99442 399 aaKnown RBP13.34□□□□□ -0.27
LDLR-208ENST00000558518 CHMP4AQ9BY43 222 aa13.34□□□□□ -0.27
LDLR-208ENST00000558518 NCOA5Q9HCD5 579 aaKnown RBP13.34□□□□□ -0.27
LDLR-208ENST00000558518 INO80Q9ULG1 1556 aaPredicted RBP13.34□□□□□ -0.27
LDLR-208ENST00000558518 PSMA5P28066 241 aa13.33□□□□□ -0.27
LDLR-208ENST00000558518 ERCC6LQ2NKX8 1250 aa13.33□□□□□ -0.27
LDLR-208ENST00000558518 SYT10Q6XYQ8 523 aa13.33□□□□□ -0.27
LDLR-208ENST00000558518 TMEM87AQ8NBN3 555 aa13.33□□□□□ -0.27
LDLR-208ENST00000558518 CTNNA3Q9UI47 895 aa13.33□□□□□ -0.27
LDLR-208ENST00000558518 SKIDA1Q1XH10 827 aa13.33□□□□□ -0.28
LDLR-208ENST00000558518 ABTB2Q8N961 1025 aa13.33□□□□□ -0.28
LDLR-208ENST00000558518 PGBD1Q96JS3 809 aa13.33□□□□□ -0.28
LDLR-208ENST00000558518 KIAA0232Q92628 1395 aa13.33□□□□□ -0.28
LDLR-208ENST00000558518 YEATS2Q9ULM3 1422 aa13.33□□□□□ -0.28
LDLR-208ENST00000558518 CPS1P31327 1500 aa13.33□□□□□ -0.28
LDLR-208ENST00000558518 PRAMEF22A3QJZ6 481 aa13.33□□□□□ -0.28
LDLR-208ENST00000558518 POLR3DP05423 398 aaPredicted RBP13.33□□□□□ -0.28
LDLR-208ENST00000558518 TMC6Q7Z403 805 aa13.33□□□□□ -0.28
LDLR-208ENST00000558518 SETD1BQ9UPS6 1966 aaKnown RBP13.33□□□□□ -0.28
LDLR-208ENST00000558518 KMT5BQ4FZB7 885 aa13.32□□□□□ -0.28
LDLR-208ENST00000558518 ZNF589Q86UQ0 364 aaPredicted RBP13.32□□□□□ -0.28
LDLR-208ENST00000558518 KRT222Q8N1A0 295 aa13.32□□□□□ -0.28
LDLR-208ENST00000558518 ANKRD7Q92527 254 aa13.32□□□□□ -0.28
LDLR-208ENST00000558518 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.32□□□□□ -0.28
LDLR-208ENST00000558518 KIDINS220Q9ULH0 1771 aa13.32□□□□□ -0.28
LDLR-208ENST00000558518 GOLGA8FQ08AF8 430 aa13.32□□□□□ -0.28
LDLR-208ENST00000558518 GOLGA8DPQ0D2H9 430 aa13.32□□□□□ -0.28
LDLR-208ENST00000558518 Q6ZUG5 572 aa13.32□□□□□ -0.28
LDLR-208ENST00000558518 NEUROD6Q96NK8 337 aa13.32□□□□□ -0.28
LDLR-208ENST00000558518 DDX19AQ9NUU7 478 aaKnown RBP13.32□□□□□ -0.28
LDLR-208ENST00000558518 UHRF1BP1LA0JNW5 1464 aa13.32□□□□□ -0.28
LDLR-208ENST00000558518 NEXMIFQ5QGS0 1516 aa13.32□□□□□ -0.28
LDLR-208ENST00000558518 FBXO38Q6PIJ6 1188 aa13.32□□□□□ -0.28
LDLR-208ENST00000558518 FSIP1Q8NA03 581 aa13.32□□□□□ -0.28
LDLR-208ENST00000558518 A0A1B0GVL5 298 aa13.31□□□□□ -0.28
LDLR-208ENST00000558518 HSP90AB4PQ58FF6 505 aa13.31□□□□□ -0.28
LDLR-208ENST00000558518 DDX46Q7L014 1031 aaKnown RBP13.31□□□□□ -0.28
LDLR-208ENST00000558518 KIF18AQ8NI77 898 aa13.31□□□□□ -0.28
LDLR-208ENST00000558518 ZSWIM4Q9H7M6 989 aa13.31□□□□□ -0.28
LDLR-208ENST00000558518 ZSWIM6Q9HCJ5 1215 aa13.31□□□□□ -0.28
LDLR-208ENST00000558518 NPHP3Q7Z494 1330 aa13.31□□□□□ -0.28
LDLR-208ENST00000558518 CLSTN2Q9H4D0 955 aa13.31□□□□□ -0.28
LDLR-208ENST00000558518 USP32Q8NFA0 1604 aa13.31□□□□□ -0.28
LDLR-208ENST00000558518 PROSER3Q2NL68 480 aa13.31□□□□□ -0.28
LDLR-208ENST00000558518 CYB5RLQ6IPT4 315 aa13.31□□□□□ -0.28
LDLR-208ENST00000558518 LRRC8AQ8IWT6 810 aa13.31□□□□□ -0.28
LDLR-208ENST00000558518 EAF2Q96CJ1 260 aaPredicted RBP13.31□□□□□ -0.28
LDLR-208ENST00000558518 FEZ1Q99689 392 aa13.31□□□□□ -0.28
LDLR-208ENST00000558518 EPC1Q9H2F5 836 aa13.31□□□□□ -0.28
LDLR-208ENST00000558518 BTBD11A6QL63 1104 aa13.3□□□□□ -0.28
LDLR-208ENST00000558518 PAXBP1Q9Y5B6 917 aa13.3□□□□□ -0.28
LDLR-208ENST00000558518 IFT172Q9UG01 1749 aa13.3□□□□□ -0.28
LDLR-208ENST00000558518 HTATSF1O43719 755 aaKnown RBP13.3□□□□□ -0.28
LDLR-208ENST00000558518 LMOD1P29536 600 aaPredicted RBP13.3□□□□□ -0.28
LDLR-208ENST00000558518 APOBRQ0VD83 1088 aa13.3□□□□□ -0.28
LDLR-208ENST00000558518 SNW1Q13573 536 aaKnown RBP13.3□□□□□ -0.28
LDLR-208ENST00000558518 EVI5LQ96CN4 794 aa13.3□□□□□ -0.28
LDLR-208ENST00000558518 URI1O94763 535 aaPredicted RBP13.29□□□□□ -0.28
LDLR-208ENST00000558518 RIC3Q7Z5B4 369 aa13.29□□□□□ -0.28
LDLR-208ENST00000558518 PDILTQ8N807 584 aa13.29□□□□□ -0.28
LDLR-208ENST00000558518 LRRN4CLQ8ND94 238 aa13.29□□□□□ -0.28
LDLR-208ENST00000558518 MNS1Q8NEH6 495 aa13.29□□□□□ -0.28
LDLR-208ENST00000558518 LRRC59Q96AG4 307 aaKnown RBP13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms