RNA–Protein interactions for RNA: ENST00000558314.5

TPM1-211, Transcript of tropomyosin 1, humanhuman

TSL 1 (best)

Gene TPM1, Length 1,031 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-211ENST00000558314 XAGE3Q8WTP9 111 aa20.3■□□□□ 0.84
TPM1-211ENST00000558314 RBM17Q96I25 401 aaKnown RBP20.3■□□□□ 0.84
TPM1-211ENST00000558314 NTSR2O95665 410 aa20.29■□□□□ 0.84
TPM1-211ENST00000558314 IARSP41252 1262 aaKnown RBP20.29■□□□□ 0.84
TPM1-211ENST00000558314 CRY2Q49AN0 593 aa20.29■□□□□ 0.84
TPM1-211ENST00000558314 PARP10Q53GL7 1025 aa20.29■□□□□ 0.84
TPM1-211ENST00000558314 EAPPQ56P03 285 aaPredicted RBP20.29■□□□□ 0.84
TPM1-211ENST00000558314 C3orf67Q6ZVT6 689 aa20.29■□□□□ 0.84
TPM1-211ENST00000558314 UTP14AQ9BVJ6 771 aaKnown RBP20.29■□□□□ 0.84
TPM1-211ENST00000558314 BABAM1Q9NWV8 329 aa20.29■□□□□ 0.84
TPM1-211ENST00000558314 CHADLQ6NUI6 762 aa20.28■□□□□ 0.84
TPM1-211ENST00000558314 SLC51AQ86UW1 340 aa20.28■□□□□ 0.84
TPM1-211ENST00000558314 TRIM35Q9UPQ4 493 aa20.28■□□□□ 0.84
TPM1-211ENST00000558314 IQCA1LA6NCM1 817 aa20.27■□□□□ 0.84
TPM1-211ENST00000558314 PPEF1O14829 653 aaPredicted RBP20.27■□□□□ 0.84
TPM1-211ENST00000558314 JDP2Q8WYK2 163 aa20.27■□□□□ 0.84
TPM1-211ENST00000558314 NLRP3Q96P20 1036 aa20.27■□□□□ 0.84
TPM1-211ENST00000558314 CLEC11AQ9Y240 323 aa20.27■□□□□ 0.84
TPM1-211ENST00000558314 CHL1O00533 1208 aa20.26■□□□□ 0.83
TPM1-211ENST00000558314 IFFO2Q5TF58 517 aa20.26■□□□□ 0.83
TPM1-211ENST00000558314 LRP10Q7Z4F1 713 aa20.26■□□□□ 0.83
TPM1-211ENST00000558314 TMX4Q9H1E5 349 aaPredicted RBP20.26■□□□□ 0.83
TPM1-211ENST00000558314 CHPF2Q9P2E5 772 aa20.26■□□□□ 0.83
TPM1-211ENST00000558314 GJA3Q9Y6H8 435 aa20.26■□□□□ 0.83
TPM1-211ENST00000558314 IBTKQ9P2D0 1353 aaPredicted RBP20.25■□□□□ 0.83
TPM1-211ENST00000558314 HCLS1P14317 486 aaPredicted RBP20.25■□□□□ 0.83
TPM1-211ENST00000558314 HDGFL1Q5TGJ6 251 aa20.25■□□□□ 0.83
TPM1-211ENST00000558314 PRKRIP1Q9H875 184 aaPredicted RBP20.25■□□□□ 0.83
TPM1-211ENST00000558314 HSP90AB3PQ58FF7 597 aa20.24■□□□□ 0.83
TPM1-211ENST00000558314 LARGE2Q8N3Y3 721 aa20.24■□□□□ 0.83
TPM1-211ENST00000558314 TAF1DQ9H5J8 278 aaPredicted RBP20.24■□□□□ 0.83
TPM1-211ENST00000558314 DDX21Q9NR30 783 aaKnown RBP eCLIP20.24■□□□□ 0.83
TPM1-211ENST00000558314 RNF123Q5XPI4 1314 aa20.24■□□□□ 0.83
TPM1-211ENST00000558314 HOXA10P31260 410 aaPredicted RBP20.23■□□□□ 0.83
TPM1-211ENST00000558314 EIF6P56537 245 aaKnown RBP20.23■□□□□ 0.83
TPM1-211ENST00000558314 CC2D2BQ6DHV5 1058 aa20.23■□□□□ 0.83
TPM1-211ENST00000558314 CRAMP1Q96RY5 1269 aa20.23■□□□□ 0.83
TPM1-211ENST00000558314 PSMD1Q99460 953 aa20.23■□□□□ 0.83
TPM1-211ENST00000558314 TRMT112Q9UI30 125 aaKnown RBP20.23■□□□□ 0.83
TPM1-211ENST00000558314 HACL1Q9UJ83 578 aa20.23■□□□□ 0.83
TPM1-211ENST00000558314 NLRP10Q86W26 655 aa20.22■□□□□ 0.83
TPM1-211ENST00000558314 L3MBTL3Q96JM7 780 aaPredicted RBP20.22■□□□□ 0.83
TPM1-211ENST00000558314 APAF1O14727 1248 aa20.21■□□□□ 0.83
TPM1-211ENST00000558314 EPHX2P34913 555 aa20.21■□□□□ 0.83
TPM1-211ENST00000558314 TCIRG1Q13488 830 aa20.21■□□□□ 0.83
TPM1-211ENST00000558314 LDHDQ86WU2 507 aa20.21■□□□□ 0.83
TPM1-211ENST00000558314 MKRN1Q9UHC7 482 aaKnown RBP20.21■□□□□ 0.83
TPM1-211ENST00000558314 RIC1Q4ADV7 1423 aa20.2■□□□□ 0.82
TPM1-211ENST00000558314 FZD9O00144 591 aa20.2■□□□□ 0.82
TPM1-211ENST00000558314 ELL2O00472 640 aaPredicted RBP20.2■□□□□ 0.82
TPM1-211ENST00000558314 DUSP27Q5VZP5 1158 aa20.2■□□□□ 0.82
TPM1-211ENST00000558314 JMYQ8N9B5 988 aa20.2■□□□□ 0.82
TPM1-211ENST00000558314 MBIPQ9NS73 344 aa20.2■□□□□ 0.82
TPM1-211ENST00000558314 ABCC4O15439 1325 aa20.2■□□□□ 0.82
TPM1-211ENST00000558314 ATP5J2-PTCD1G3V325 749 aa20.19■□□□□ 0.82
TPM1-211ENST00000558314 PPIP5K2O43314 1243 aa20.19■□□□□ 0.82
TPM1-211ENST00000558314 RTL5Q5HYW3 569 aaPredicted RBP20.19■□□□□ 0.82
TPM1-211ENST00000558314 NIM1KQ8IY84 436 aa20.19■□□□□ 0.82
TPM1-211ENST00000558314 SH3TC1Q8TE82 1336 aa20.19■□□□□ 0.82
TPM1-211ENST00000558314 LMOD1P29536 600 aaPredicted RBP20.18■□□□□ 0.82
TPM1-211ENST00000558314 AOC3Q16853 763 aa20.18■□□□□ 0.82
TPM1-211ENST00000558314 SLC10A5Q5PT55 438 aa20.18■□□□□ 0.82
TPM1-211ENST00000558314 DDX46Q7L014 1031 aaKnown RBP20.18■□□□□ 0.82
TPM1-211ENST00000558314 GPC2Q8N158 579 aa20.18■□□□□ 0.82
TPM1-211ENST00000558314 CFAP44Q96MT7 982 aa20.18■□□□□ 0.82
TPM1-211ENST00000558314 DBF4Q9UBU7 674 aaPredicted RBP20.18■□□□□ 0.82
TPM1-211ENST00000558314 ANKRD13DQ6ZTN6 518 aa20.17■□□□□ 0.82
TPM1-211ENST00000558314 PLBD2Q8NHP8 589 aa20.17■□□□□ 0.82
TPM1-211ENST00000558314 ATP6V0A2Q9Y487 856 aa20.17■□□□□ 0.82
TPM1-211ENST00000558314 GRIPAP1Q4V328 841 aa20.16■□□□□ 0.82
TPM1-211ENST00000558314 MAP1SQ66K74 1059 aaPredicted RBP20.16■□□□□ 0.82
TPM1-211ENST00000558314 DPP8Q6V1X1 898 aaPredicted RBP20.16■□□□□ 0.82
TPM1-211ENST00000558314 CREBZFQ9NS37 354 aa20.16■□□□□ 0.82
TPM1-211ENST00000558314 SNED1Q8TER0 1413 aa20.16■□□□□ 0.82
TPM1-211ENST00000558314 HOXB7P09629 217 aa20.15■□□□□ 0.82
TPM1-211ENST00000558314 PNMA8AQ86V59 439 aaPredicted RBP20.15■□□□□ 0.82
TPM1-211ENST00000558314 FAM89AQ96GI7 184 aa20.15■□□□□ 0.82
TPM1-211ENST00000558314 HYPKQ9NX55 129 aa20.15■□□□□ 0.82
TPM1-211ENST00000558314 COL4A5P29400 1685 aa20.15■□□□□ 0.82
TPM1-211ENST00000558314 SCN4AP35499 1836 aa20.15■□□□□ 0.82
TPM1-211ENST00000558314 HSPA1AP0DMV8 641 aaKnown RBP20.14■□□□□ 0.81
TPM1-211ENST00000558314 HSPA1BP0DMV9 641 aaKnown RBP20.14■□□□□ 0.81
TPM1-211ENST00000558314 RIC3Q7Z5B4 369 aa20.14■□□□□ 0.81
TPM1-211ENST00000558314 MPNDQ8N594 471 aa20.14■□□□□ 0.81
TPM1-211ENST00000558314 ANKRD36CQ5JPF3 1778 aa20.13■□□□□ 0.81
TPM1-211ENST00000558314 BBOX1O75936 387 aa20.13■□□□□ 0.81
TPM1-211ENST00000558314 EPS15P42566 896 aa20.13■□□□□ 0.81
TPM1-211ENST00000558314 GNAI1P63096 354 aa20.13■□□□□ 0.81
TPM1-211ENST00000558314 CALD1Q05682 793 aaKnown RBP20.13■□□□□ 0.81
TPM1-211ENST00000558314 GOLGA2Q08379 1002 aa20.13■□□□□ 0.81
TPM1-211ENST00000558314 GRAPQ13588 217 aa20.13■□□□□ 0.81
TPM1-211ENST00000558314 COL13A1Q5TAT6 717 aaPredicted RBP20.13■□□□□ 0.81
TPM1-211ENST00000558314 SUPT20HQ8NEM7 779 aa20.13■□□□□ 0.81
TPM1-211ENST00000558314 GRAPLQ8TC17 118 aaPredicted RBP20.13■□□□□ 0.81
TPM1-211ENST00000558314 SP8Q8IXZ3 490 aa20.12■□□□□ 0.81
TPM1-211ENST00000558314 CNTROBQ8N137 903 aa20.12■□□□□ 0.81
TPM1-211ENST00000558314 PHAXQ9H814 394 aaKnown RBP20.12■□□□□ 0.81
TPM1-211ENST00000558314 IFT57Q9NWB7 429 aa20.12■□□□□ 0.81
TPM1-211ENST00000558314 PASKQ96RG2 1323 aa20.11■□□□□ 0.81
TPM1-211ENST00000558314 TMEM88BA6NKF7 163 aa20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 217.1 ms