RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 CCDC88AQ3V6T2 1871 aa15.37■□□□□ 0.05
VRK1-204ENST00000555351 ABCC12Q96J65 1359 aa15.36■□□□□ 0.05
VRK1-204ENST00000555351 SENP3-EIF4A1A0A087X0R7 540 aa15.36■□□□□ 0.05
VRK1-204ENST00000555351 GLTPD2A6NH11 291 aa15.36■□□□□ 0.05
VRK1-204ENST00000555351 FAM177BA6PVY3 158 aa15.36■□□□□ 0.05
VRK1-204ENST00000555351 CCDC184Q52MB2 194 aa15.36■□□□□ 0.05
VRK1-204ENST00000555351 RTKN2Q8IZC4 609 aa15.36■□□□□ 0.05
VRK1-204ENST00000555351 PLBD2Q8NHP8 589 aa15.36■□□□□ 0.05
VRK1-204ENST00000555351 UTP14AQ9BVJ6 771 aaKnown RBP15.36■□□□□ 0.05
VRK1-204ENST00000555351 ANXA1P04083 346 aa15.35■□□□□ 0.05
VRK1-204ENST00000555351 TCIRG1Q13488 830 aa15.35■□□□□ 0.05
VRK1-204ENST00000555351 NUTM1Q86Y26 1132 aa15.35■□□□□ 0.05
VRK1-204ENST00000555351 RBM46Q8TBY0 533 aaKnown RBP15.35■□□□□ 0.05
VRK1-204ENST00000555351 CRAMP1Q96RY5 1269 aa15.35■□□□□ 0.05
VRK1-204ENST00000555351 MRS2Q9HD23 443 aa15.35■□□□□ 0.05
VRK1-204ENST00000555351 NMRK2Q9NPI5 230 aa15.35■□□□□ 0.05
VRK1-204ENST00000555351 IL16Q14005 1332 aa15.35■□□□□ 0.05
VRK1-204ENST00000555351 DPY19L2Q6NUT2 758 aa15.34■□□□□ 0.05
VRK1-204ENST00000555351 ANKRD13DQ6ZTN6 518 aa15.34■□□□□ 0.05
VRK1-204ENST00000555351 NLRP10Q86W26 655 aa15.34■□□□□ 0.05
VRK1-204ENST00000555351 NECTIN2Q92692 538 aa15.34■□□□□ 0.05
VRK1-204ENST00000555351 RPGRQ92834 1020 aaKnown RBP15.34■□□□□ 0.05
VRK1-204ENST00000555351 NLRP3Q96P20 1036 aa15.34■□□□□ 0.05
VRK1-204ENST00000555351 HSPA6P17066 643 aa15.33■□□□□ 0.04
VRK1-204ENST00000555351 FKBP4Q02790 459 aaKnown RBP eCLIP15.33■□□□□ 0.04
VRK1-204ENST00000555351 AIMP1Q12904 312 aaKnown RBP15.33■□□□□ 0.04
VRK1-204ENST00000555351 TRIM28Q13263 835 aaKnown RBP15.33■□□□□ 0.04
VRK1-204ENST00000555351 RBM17Q96I25 401 aaKnown RBP15.33■□□□□ 0.04
VRK1-204ENST00000555351 ZNF219Q9P2Y4 722 aaPredicted RBP15.33■□□□□ 0.04
VRK1-204ENST00000555351 SNED1Q8TER0 1413 aa15.33■□□□□ 0.04
VRK1-204ENST00000555351 WDR90Q96KV7 1748 aa15.32■□□□□ 0.04
VRK1-204ENST00000555351 VEGFAP15692 232 aaPredicted RBP15.32■□□□□ 0.04
VRK1-204ENST00000555351 FSTL1Q12841 308 aa15.32■□□□□ 0.04
VRK1-204ENST00000555351 WWC1Q8IX03 1113 aa15.32■□□□□ 0.04
VRK1-204ENST00000555351 C16orf71Q8IYS4 520 aaPredicted RBP15.32■□□□□ 0.04
VRK1-204ENST00000555351 PSMD1Q99460 953 aa15.32■□□□□ 0.04
VRK1-204ENST00000555351 CCDC30Q5VVM6 783 aa15.31■□□□□ 0.04
VRK1-204ENST00000555351 ISCA1Q9BUE6 129 aa15.31■□□□□ 0.04
VRK1-204ENST00000555351 RRAGCQ9HB90 399 aa15.31■□□□□ 0.04
VRK1-204ENST00000555351 SH3TC1Q8TE82 1336 aa15.31■□□□□ 0.04
VRK1-204ENST00000555351 TRMT112Q9UI30 125 aaKnown RBP15.3■□□□□ 0.04
VRK1-204ENST00000555351 C8orf58Q8NAV2 365 aa15.29■□□□□ 0.04
VRK1-204ENST00000555351 LAMB2P55268 1798 aa15.29■□□□□ 0.04
VRK1-204ENST00000555351 BBOX1O75936 387 aa15.28■□□□□ 0.04
VRK1-204ENST00000555351 APLP1P51693 650 aa15.28■□□□□ 0.04
VRK1-204ENST00000555351 GOLGA2Q08379 1002 aa15.28■□□□□ 0.04
VRK1-204ENST00000555351 TMC4Q7Z404 712 aa15.28■□□□□ 0.04
VRK1-204ENST00000555351 WDR63Q8IWG1 891 aa15.28■□□□□ 0.04
VRK1-204ENST00000555351 VPS33BQ9H267 617 aa15.28■□□□□ 0.04
VRK1-204ENST00000555351 PPEF1O14829 653 aaPredicted RBP15.27■□□□□ 0.04
VRK1-204ENST00000555351 DDX58O95786 925 aaKnown RBP15.27■□□□□ 0.04
VRK1-204ENST00000555351 HSP90B1P14625 803 aaKnown RBP15.27■□□□□ 0.04
VRK1-204ENST00000555351 IARSP41252 1262 aaKnown RBP15.27■□□□□ 0.04
VRK1-204ENST00000555351 SYNE4Q8N205 404 aa15.27■□□□□ 0.04
VRK1-204ENST00000555351 TMX4Q9H1E5 349 aaPredicted RBP15.27■□□□□ 0.04
VRK1-204ENST00000555351 ELL2O00472 640 aaPredicted RBP15.26■□□□□ 0.03
VRK1-204ENST00000555351 C3orf67Q6ZVT6 689 aa15.26■□□□□ 0.03
VRK1-204ENST00000555351 RIC3Q7Z5B4 369 aa15.26■□□□□ 0.03
VRK1-204ENST00000555351 SMC1BQ8NDV3 1235 aa15.26■□□□□ 0.03
VRK1-204ENST00000555351 L3MBTL3Q96JM7 780 aaPredicted RBP15.26■□□□□ 0.03
VRK1-204ENST00000555351 ATP6V0A2Q9Y487 856 aa15.26■□□□□ 0.03
VRK1-204ENST00000555351 DDX60Q8IY21 1712 aaKnown RBP15.26■□□□□ 0.03
VRK1-204ENST00000555351 ABCC4O15439 1325 aa15.25■□□□□ 0.03
VRK1-204ENST00000555351 SCN4AP35499 1836 aa15.25■□□□□ 0.03
VRK1-204ENST00000555351 SF3B3Q15393 1217 aaKnown RBP15.25■□□□□ 0.03
VRK1-204ENST00000555351 OLFM4Q6UX06 510 aa15.25■□□□□ 0.03
VRK1-204ENST00000555351 DDX46Q7L014 1031 aaKnown RBP15.25■□□□□ 0.03
VRK1-204ENST00000555351 CCDC191Q8NCU4 936 aa15.25■□□□□ 0.03
VRK1-204ENST00000555351 PHAXQ9H814 394 aaKnown RBP15.25■□□□□ 0.03
VRK1-204ENST00000555351 ZNF277Q9NRM2 450 aaPredicted RBP15.25■□□□□ 0.03
VRK1-204ENST00000555351 IQCA1LA6NCM1 817 aa15.24■□□□□ 0.03
VRK1-204ENST00000555351 POTECB2RU33 542 aa15.24■□□□□ 0.03
VRK1-204ENST00000555351 FZD9O00144 591 aa15.24■□□□□ 0.03
VRK1-204ENST00000555351 HCLS1P14317 486 aaPredicted RBP15.24■□□□□ 0.03
VRK1-204ENST00000555351 TWISTNBQ3B726 338 aaPredicted RBP15.24■□□□□ 0.03
VRK1-204ENST00000555351 SP8Q8IXZ3 490 aa15.24■□□□□ 0.03
VRK1-204ENST00000555351 TSPYL6Q8N831 410 aa15.24■□□□□ 0.03
VRK1-204ENST00000555351 JDP2Q8WYK2 163 aa15.24■□□□□ 0.03
VRK1-204ENST00000555351 TSR2Q969E8 191 aaKnown RBP15.24■□□□□ 0.03
VRK1-204ENST00000555351 STK31Q9BXU1 1019 aa15.24■□□□□ 0.03
VRK1-204ENST00000555351 ATP5J2-PTCD1G3V325 749 aa15.23■□□□□ 0.03
VRK1-204ENST00000555351 GRAPQ13588 217 aa15.23■□□□□ 0.03
VRK1-204ENST00000555351 ZBTB38Q8NAP3 1195 aaPredicted RBP15.23■□□□□ 0.03
VRK1-204ENST00000555351 SUPT20HQ8NEM7 779 aa15.23■□□□□ 0.03
VRK1-204ENST00000555351 GRAPLQ8TC17 118 aaPredicted RBP15.23■□□□□ 0.03
VRK1-204ENST00000555351 METTL22Q9BUU2 404 aaPredicted RBP15.23■□□□□ 0.03
VRK1-204ENST00000555351 RTFDC1Q9BY42 306 aaPredicted RBP15.23■□□□□ 0.03
VRK1-204ENST00000555351 CACNA1FO60840 1977 aa15.23■□□□□ 0.03
VRK1-204ENST00000555351 DDNO94850 711 aaPredicted RBP15.22■□□□□ 0.03
VRK1-204ENST00000555351 KSR2Q6VAB6 950 aa15.22■□□□□ 0.03
VRK1-204ENST00000555351 GPC2Q8N158 579 aa15.22■□□□□ 0.03
VRK1-204ENST00000555351 FAM89AQ96GI7 184 aa15.22■□□□□ 0.03
VRK1-204ENST00000555351 LRRC37AA6NMS7 1700 aa15.22■□□□□ 0.03
VRK1-204ENST00000555351 FANCIQ9NVI1 1328 aa15.21■□□□□ 0.03
VRK1-204ENST00000555351 PCCAP05165 728 aaPredicted RBP15.21■□□□□ 0.03
VRK1-204ENST00000555351 CWC25Q9NXE8 425 aaPredicted RBP15.21■□□□□ 0.03
VRK1-204ENST00000555351 IRS4O14654 1257 aaPredicted RBP15.2■□□□□ 0.02
VRK1-204ENST00000555351 MYD88Q99836 296 aa15.2■□□□□ 0.02
VRK1-204ENST00000555351 ZNF541Q9H0D2 1346 aa15.19■□□□□ 0.02
VRK1-204ENST00000555351 EIF6P56537 245 aaKnown RBP15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms