RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 FBXW7Q969H0 707 aa6.74□□□□□ -1.33
LIMA1-215ENST00000552823 RRAGDQ9NQL2 400 aaPredicted RBP6.74□□□□□ -1.33
LIMA1-215ENST00000552823 RBM8AQ9Y5S9 174 aaKnown RBP6.74□□□□□ -1.33
LIMA1-215ENST00000552823 SGSM2O43147 1006 aa6.73□□□□□ -1.33
LIMA1-215ENST00000552823 POLA2Q14181 598 aa6.73□□□□□ -1.33
LIMA1-215ENST00000552823 FAM182BQ5T319 152 aa6.73□□□□□ -1.33
LIMA1-215ENST00000552823 ZNF589Q86UQ0 364 aaPredicted RBP6.73□□□□□ -1.33
LIMA1-215ENST00000552823 NAP1L5Q96NT1 182 aaPredicted RBP6.73□□□□□ -1.33
LIMA1-215ENST00000552823 PDRG1Q9NUG6 133 aa6.73□□□□□ -1.33
LIMA1-215ENST00000552823 TFIP11Q9UBB9 837 aaKnown RBP6.73□□□□□ -1.33
LIMA1-215ENST00000552823 GUCY1B3Q02153 619 aa6.73□□□□□ -1.33
LIMA1-215ENST00000552823 WASHC4Q2M389 1173 aa6.73□□□□□ -1.33
LIMA1-215ENST00000552823 DCAF5Q96JK2 942 aa6.73□□□□□ -1.33
LIMA1-215ENST00000552823 METTL22Q9BUU2 404 aaPredicted RBP6.73□□□□□ -1.33
LIMA1-215ENST00000552823 C1orf167Q5SNV9 1468 aa6.73□□□□□ -1.33
LIMA1-215ENST00000552823 ANKARQ7Z5J8 1434 aa6.73□□□□□ -1.33
LIMA1-215ENST00000552823 NRKQ7Z2Y5 1582 aa6.73□□□□□ -1.33
LIMA1-215ENST00000552823 KNDC1Q76NI1 1749 aa6.72□□□□□ -1.33
LIMA1-215ENST00000552823 MON2Q7Z3U7 1717 aa6.72□□□□□ -1.33
LIMA1-215ENST00000552823 A0A0G2JLW4 131 aa6.72□□□□□ -1.33
LIMA1-215ENST00000552823 PI16Q6UXB8 463 aa6.72□□□□□ -1.33
LIMA1-215ENST00000552823 BICDL1Q6ZP65 573 aa6.72□□□□□ -1.33
LIMA1-215ENST00000552823 ANP32BQ92688 251 aaKnown RBP6.72□□□□□ -1.33
LIMA1-215ENST00000552823 TMOD3Q9NYL9 352 aa6.72□□□□□ -1.33
LIMA1-215ENST00000552823 IQSEC3Q9UPP2 1182 aaPredicted RBP6.72□□□□□ -1.33
LIMA1-215ENST00000552823 CNPY2Q9Y2B0 182 aa6.72□□□□□ -1.33
LIMA1-215ENST00000552823 SLIT1O75093 1534 aa6.72□□□□□ -1.33
LIMA1-215ENST00000552823 PIK3C2AO00443 1686 aa6.72□□□□□ -1.33
LIMA1-215ENST00000552823 TULP1O00294 542 aaPredicted RBP6.72□□□□□ -1.33
LIMA1-215ENST00000552823 ALDH1L1O75891 902 aa6.72□□□□□ -1.33
LIMA1-215ENST00000552823 ZKSCAN1P17029 563 aaPredicted RBP6.72□□□□□ -1.33
LIMA1-215ENST00000552823 CCT2P78371 535 aaKnown RBP6.72□□□□□ -1.33
LIMA1-215ENST00000552823 RUFY2Q8WXA3 655 aa6.72□□□□□ -1.33
LIMA1-215ENST00000552823 ARID3AQ99856 593 aa6.72□□□□□ -1.33
LIMA1-215ENST00000552823 BCL11BQ9C0K0 894 aaPredicted RBP6.72□□□□□ -1.33
LIMA1-215ENST00000552823 OSBPL3Q9H4L5 887 aa6.72□□□□□ -1.33
LIMA1-215ENST00000552823 DBNLQ9UJU6 430 aaKnown RBP6.72□□□□□ -1.33
LIMA1-215ENST00000552823 CEMIPQ8WUJ3 1361 aa6.72□□□□□ -1.33
LIMA1-215ENST00000552823 ZBTB22O15209 634 aa6.72□□□□□ -1.33
LIMA1-215ENST00000552823 PRIM1P49642 420 aaKnown RBP6.72□□□□□ -1.33
LIMA1-215ENST00000552823 CIZ1Q9ULV3 898 aaPredicted RBP6.72□□□□□ -1.33
LIMA1-215ENST00000552823 KIF24Q5T7B8 1368 aa6.71□□□□□ -1.33
LIMA1-215ENST00000552823 IL2RBP14784 551 aa6.71□□□□□ -1.33
LIMA1-215ENST00000552823 NASPP49321 788 aaPredicted RBP6.71□□□□□ -1.33
LIMA1-215ENST00000552823 LSG1Q9H089 658 aaKnown RBP6.71□□□□□ -1.33
LIMA1-215ENST00000552823 LMBRD1Q9NUN5 540 aa6.71□□□□□ -1.33
LIMA1-215ENST00000552823 CYP46A1Q9Y6A2 500 aa6.71□□□□□ -1.33
LIMA1-215ENST00000552823 APPP05067 770 aa6.71□□□□□ -1.34
LIMA1-215ENST00000552823 PTMAP06454 111 aaKnown RBP6.71□□□□□ -1.34
LIMA1-215ENST00000552823 GJB2P29033 226 aa6.71□□□□□ -1.34
LIMA1-215ENST00000552823 RUFY3Q7L099 469 aa6.71□□□□□ -1.34
LIMA1-215ENST00000552823 GPT2Q8TD30 523 aa6.71□□□□□ -1.34
LIMA1-215ENST00000552823 STAP2Q9UGK3 403 aa6.71□□□□□ -1.34
LIMA1-215ENST00000552823 SPATA31A3Q5VYP0 1347 aa6.71□□□□□ -1.34
LIMA1-215ENST00000552823 SALL3Q9BXA9 1300 aa6.71□□□□□ -1.34
LIMA1-215ENST00000552823 MRE11P49959 708 aa6.7□□□□□ -1.34
LIMA1-215ENST00000552823 PTPN12Q05209 780 aaKnown RBP6.7□□□□□ -1.34
LIMA1-215ENST00000552823 CAMK4Q16566 473 aa6.7□□□□□ -1.34
LIMA1-215ENST00000552823 VPS53Q5VIR6 699 aa6.7□□□□□ -1.34
LIMA1-215ENST00000552823 CREB3L3Q68CJ9 461 aa6.7□□□□□ -1.34
LIMA1-215ENST00000552823 TTLL5Q6EMB2 1281 aa6.7□□□□□ -1.34
LIMA1-215ENST00000552823 ERC1Q8IUD2 1116 aa6.7□□□□□ -1.34
LIMA1-215ENST00000552823 CHMP4AQ9BY43 222 aa6.7□□□□□ -1.34
LIMA1-215ENST00000552823 AKAP12Q02952 1782 aa6.7□□□□□ -1.34
LIMA1-215ENST00000552823 HCLS1P14317 486 aaPredicted RBP6.7□□□□□ -1.34
LIMA1-215ENST00000552823 ADORA1P30542 326 aa6.7□□□□□ -1.34
LIMA1-215ENST00000552823 HSPA4P34932 840 aa6.7□□□□□ -1.34
LIMA1-215ENST00000552823 ZSCAN23Q3MJ62 389 aa6.7□□□□□ -1.34
LIMA1-215ENST00000552823 TNNI3KQ59H18 835 aa6.7□□□□□ -1.34
LIMA1-215ENST00000552823 USP48Q86UV5 1035 aa6.7□□□□□ -1.34
LIMA1-215ENST00000552823 EVI5LQ96CN4 794 aa6.7□□□□□ -1.34
LIMA1-215ENST00000552823 TOMM22Q9NS69 142 aa6.7□□□□□ -1.34
LIMA1-215ENST00000552823 CWC25Q9NXE8 425 aaPredicted RBP6.7□□□□□ -1.34
LIMA1-215ENST00000552823 TMEM63CQ9P1W3 806 aa6.7□□□□□ -1.34
LIMA1-215ENST00000552823 FPGT-TNNI3KV9GXZ4 949 aa6.7□□□□□ -1.34
LIMA1-215ENST00000552823 MEGF6O75095 1541 aa6.7□□□□□ -1.34
LIMA1-215ENST00000552823 DNM1Q05193 864 aaKnown RBP6.7□□□□□ -1.34
LIMA1-215ENST00000552823 HLFQ16534 295 aa6.7□□□□□ -1.34
LIMA1-215ENST00000552823 CCDC57Q2TAC2 916 aa6.7□□□□□ -1.34
LIMA1-215ENST00000552823 LARP1BQ659C4 914 aaKnown RBP6.7□□□□□ -1.34
LIMA1-215ENST00000552823 BLOC1S2Q6QNY1 142 aa6.7□□□□□ -1.34
LIMA1-215ENST00000552823 RBSNQ9H1K0 784 aa6.7□□□□□ -1.34
LIMA1-215ENST00000552823 CNNM1Q9NRU3 951 aa6.7□□□□□ -1.34
LIMA1-215ENST00000552823 HOXB7P09629 217 aa6.69□□□□□ -1.34
LIMA1-215ENST00000552823 IFIT1P09914 478 aaKnown RBP6.69□□□□□ -1.34
LIMA1-215ENST00000552823 SYT1P21579 422 aa6.69□□□□□ -1.34
LIMA1-215ENST00000552823 DDIT3P35638 169 aa6.69□□□□□ -1.34
LIMA1-215ENST00000552823 ME3Q16798 604 aa6.69□□□□□ -1.34
LIMA1-215ENST00000552823 PIGBQ92521 554 aa6.69□□□□□ -1.34
LIMA1-215ENST00000552823 GPHNQ9NQX3 736 aaPredicted RBP6.69□□□□□ -1.34
LIMA1-215ENST00000552823 BABAM1Q9NWV8 329 aa6.69□□□□□ -1.34
LIMA1-215ENST00000552823 CEP126Q9P2H0 1117 aa6.69□□□□□ -1.34
LIMA1-215ENST00000552823 LIMCH1Q9UPQ0 1083 aa6.69□□□□□ -1.34
LIMA1-215ENST00000552823 JAK2O60674 1132 aa6.69□□□□□ -1.34
LIMA1-215ENST00000552823 SKOR2Q2VWA4 1001 aaPredicted RBP6.69□□□□□ -1.34
LIMA1-215ENST00000552823 TRMT112Q9UI30 125 aaKnown RBP6.69□□□□□ -1.34
LIMA1-215ENST00000552823 HDAC5Q9UQL6 1122 aa6.69□□□□□ -1.34
LIMA1-215ENST00000552823 CCDC171Q6TFL3 1326 aa6.69□□□□□ -1.34
LIMA1-215ENST00000552823 RAD50Q92878 1312 aa6.69□□□□□ -1.34
LIMA1-215ENST00000552823 RGPD2P0DJD1 1756 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms