RNA–Protein interactions for RNA: ENST00000547614.5

CHMP1A-203, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 653 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-203ENST00000547614 CACNA1SQ13698 1873 aa24.23■■□□□ 1.47
CHMP1A-203ENST00000547614 RNF123Q5XPI4 1314 aa24.22■■□□□ 1.47
CHMP1A-203ENST00000547614 HOXA10P31260 410 aaPredicted RBP24.22■■□□□ 1.47
CHMP1A-203ENST00000547614 DPY19L2Q6NUT2 758 aa24.22■■□□□ 1.47
CHMP1A-203ENST00000547614 C16orf71Q8IYS4 520 aaPredicted RBP24.22■■□□□ 1.47
CHMP1A-203ENST00000547614 RTKN2Q8IZC4 609 aa24.22■■□□□ 1.47
CHMP1A-203ENST00000547614 RBM46Q8TBY0 533 aaKnown RBP24.22■■□□□ 1.47
CHMP1A-203ENST00000547614 UTP14AQ9BVJ6 771 aaKnown RBP24.22■■□□□ 1.47
CHMP1A-203ENST00000547614 TCIRG1Q13488 830 aa24.21■■□□□ 1.47
CHMP1A-203ENST00000547614 SLC10A5Q5PT55 438 aa24.21■■□□□ 1.47
CHMP1A-203ENST00000547614 HYPKQ9NX55 129 aa24.21■■□□□ 1.47
CHMP1A-203ENST00000547614 DICER1Q9UPY3 1922 aaKnown RBP24.21■■□□□ 1.47
CHMP1A-203ENST00000547614 TNRC6CQ9HCJ0 1690 aaKnown RBP24.21■■□□□ 1.47
CHMP1A-203ENST00000547614 RPGRQ92834 1020 aaKnown RBP24.2■■□□□ 1.46
CHMP1A-203ENST00000547614 TIAM2Q8IVF5 1701 aa24.19■■□□□ 1.46
CHMP1A-203ENST00000547614 FKBP4Q02790 459 aaKnown RBP eCLIP24.19■■□□□ 1.46
CHMP1A-203ENST00000547614 CCDC27Q2M243 656 aa24.19■■□□□ 1.46
CHMP1A-203ENST00000547614 NLRP10Q86W26 655 aa24.19■■□□□ 1.46
CHMP1A-203ENST00000547614 PLBD2Q8NHP8 589 aa24.19■■□□□ 1.46
CHMP1A-203ENST00000547614 NLRP3Q96P20 1036 aa24.19■■□□□ 1.46
CHMP1A-203ENST00000547614 VEGFAP15692 232 aaPredicted RBP24.18■■□□□ 1.46
CHMP1A-203ENST00000547614 NCBP3Q53F19 620 aaKnown RBP24.18■■□□□ 1.46
CHMP1A-203ENST00000547614 CC2D2BQ6DHV5 1058 aa24.18■■□□□ 1.46
CHMP1A-203ENST00000547614 ANKRD13DQ6ZTN6 518 aa24.18■■□□□ 1.46
CHMP1A-203ENST00000547614 CRAMP1Q96RY5 1269 aa24.18■■□□□ 1.46
CHMP1A-203ENST00000547614 CHMP4AQ9BY43 222 aa24.18■■□□□ 1.46
CHMP1A-203ENST00000547614 MRS2Q9HD23 443 aa24.18■■□□□ 1.46
CHMP1A-203ENST00000547614 RBM17Q96I25 401 aaKnown RBP24.17■■□□□ 1.46
CHMP1A-203ENST00000547614 FSTL1Q12841 308 aa24.16■■□□□ 1.46
CHMP1A-203ENST00000547614 GRIPAP1Q4V328 841 aa24.16■■□□□ 1.46
CHMP1A-203ENST00000547614 ANKRD36CQ5JPF3 1778 aa24.16■■□□□ 1.46
CHMP1A-203ENST00000547614 OLFM4Q6UX06 510 aa24.15■■□□□ 1.46
CHMP1A-203ENST00000547614 CEP350Q5VT06 3117 aa24.14■■□□□ 1.46
CHMP1A-203ENST00000547614 C3orf67Q6ZVT6 689 aa24.14■■□□□ 1.45
CHMP1A-203ENST00000547614 WWC1Q8IX03 1113 aa24.14■■□□□ 1.45
CHMP1A-203ENST00000547614 TRMT112Q9UI30 125 aaKnown RBP24.14■■□□□ 1.45
CHMP1A-203ENST00000547614 ELL2O00472 640 aaPredicted RBP24.13■■□□□ 1.45
CHMP1A-203ENST00000547614 C8orf58Q8NAV2 365 aa24.13■■□□□ 1.45
CHMP1A-203ENST00000547614 PSMD1Q99460 953 aa24.13■■□□□ 1.45
CHMP1A-203ENST00000547614 SH3TC1Q8TE82 1336 aa24.12■■□□□ 1.45
CHMP1A-203ENST00000547614 SNED1Q8TER0 1413 aa24.12■■□□□ 1.45
CHMP1A-203ENST00000547614 APLP1P51693 650 aa24.12■■□□□ 1.45
CHMP1A-203ENST00000547614 SYNE4Q8N205 404 aa24.12■■□□□ 1.45
CHMP1A-203ENST00000547614 ISCA1Q9BUE6 129 aa24.12■■□□□ 1.45
CHMP1A-203ENST00000547614 ZNF277Q9NRM2 450 aaPredicted RBP24.12■■□□□ 1.45
CHMP1A-203ENST00000547614 WDR90Q96KV7 1748 aa24.11■■□□□ 1.45
CHMP1A-203ENST00000547614 POTECB2RU33 542 aa24.11■■□□□ 1.45
CHMP1A-203ENST00000547614 TRIM28Q13263 835 aaKnown RBP24.11■■□□□ 1.45
CHMP1A-203ENST00000547614 IARSP41252 1262 aaKnown RBP24.1■■□□□ 1.45
CHMP1A-203ENST00000547614 CCDC30Q5VVM6 783 aa24.1■■□□□ 1.45
CHMP1A-203ENST00000547614 SMC1BQ8NDV3 1235 aa24.1■■□□□ 1.45
CHMP1A-203ENST00000547614 IL16Q14005 1332 aa24.1■■□□□ 1.45
CHMP1A-203ENST00000547614 PPEF1O14829 653 aaPredicted RBP24.09■■□□□ 1.45
CHMP1A-203ENST00000547614 HCLS1P14317 486 aaPredicted RBP24.09■■□□□ 1.45
CHMP1A-203ENST00000547614 BBOX1O75936 387 aa24.08■■□□□ 1.45
CHMP1A-203ENST00000547614 DDNO94850 711 aaPredicted RBP24.08■■□□□ 1.45
CHMP1A-203ENST00000547614 GOLGA2Q08379 1002 aa24.08■■□□□ 1.45
CHMP1A-203ENST00000547614 PHAXQ9H814 394 aaKnown RBP24.08■■□□□ 1.45
CHMP1A-203ENST00000547614 ATP5J2-PTCD1G3V325 749 aa24.07■■□□□ 1.44
CHMP1A-203ENST00000547614 RIC3Q7Z5B4 369 aa24.07■■□□□ 1.44
CHMP1A-203ENST00000547614 TMX4Q9H1E5 349 aaPredicted RBP24.07■■□□□ 1.44
CHMP1A-203ENST00000547614 ATP6V0A2Q9Y487 856 aa24.07■■□□□ 1.44
CHMP1A-203ENST00000547614 TSPYL6Q8N831 410 aa24.06■■□□□ 1.44
CHMP1A-203ENST00000547614 TSR2Q969E8 191 aaKnown RBP24.06■■□□□ 1.44
CHMP1A-203ENST00000547614 ABCC4O15439 1325 aa24.06■■□□□ 1.44
CHMP1A-203ENST00000547614 FZD9O00144 591 aa24.05■■□□□ 1.44
CHMP1A-203ENST00000547614 DDX46Q7L014 1031 aaKnown RBP24.05■■□□□ 1.44
CHMP1A-203ENST00000547614 JDP2Q8WYK2 163 aa24.05■■□□□ 1.44
CHMP1A-203ENST00000547614 L3MBTL3Q96JM7 780 aaPredicted RBP24.05■■□□□ 1.44
CHMP1A-203ENST00000547614 FAM89AQ96GI7 184 aa24.04■■□□□ 1.44
CHMP1A-203ENST00000547614 IQCA1LA6NCM1 817 aa24.03■■□□□ 1.44
CHMP1A-203ENST00000547614 TCERG1O14776 1098 aaKnown RBP24.03■■□□□ 1.44
CHMP1A-203ENST00000547614 DDX58O95786 925 aaKnown RBP24.03■■□□□ 1.44
CHMP1A-203ENST00000547614 WDR63Q8IWG1 891 aa24.03■■□□□ 1.44
CHMP1A-203ENST00000547614 SP8Q8IXZ3 490 aa24.03■■□□□ 1.44
CHMP1A-203ENST00000547614 VPS33BQ9H267 617 aa24.03■■□□□ 1.44
CHMP1A-203ENST00000547614 LAMB2P55268 1798 aa24.03■■□□□ 1.44
CHMP1A-203ENST00000547614 GRAPQ13588 217 aa24.02■■□□□ 1.44
CHMP1A-203ENST00000547614 SF3B3Q15393 1217 aaKnown RBP24.02■■□□□ 1.44
CHMP1A-203ENST00000547614 TMC4Q7Z404 712 aa24.02■■□□□ 1.44
CHMP1A-203ENST00000547614 GRAPLQ8TC17 118 aaPredicted RBP24.02■■□□□ 1.44
CHMP1A-203ENST00000547614 TWISTNBQ3B726 338 aaPredicted RBP24.01■■□□□ 1.43
CHMP1A-203ENST00000547614 ZBTB38Q8NAP3 1195 aaPredicted RBP24.01■■□□□ 1.43
CHMP1A-203ENST00000547614 CCDC191Q8NCU4 936 aa24.01■■□□□ 1.43
CHMP1A-203ENST00000547614 STK31Q9BXU1 1019 aa24.01■■□□□ 1.43
CHMP1A-203ENST00000547614 ZNF541Q9H0D2 1346 aa24.01■■□□□ 1.43
CHMP1A-203ENST00000547614 HSP90B1P14625 803 aaKnown RBP24■■□□□ 1.43
CHMP1A-203ENST00000547614 DNAJC5GQ8N7S2 189 aa24■■□□□ 1.43
CHMP1A-203ENST00000547614 SUPT20HQ8NEM7 779 aa24■■□□□ 1.43
CHMP1A-203ENST00000547614 ZNF428Q96B54 188 aa24■■□□□ 1.43
CHMP1A-203ENST00000547614 METTL22Q9BUU2 404 aaPredicted RBP24■■□□□ 1.43
CHMP1A-203ENST00000547614 RTFDC1Q9BY42 306 aaPredicted RBP24■■□□□ 1.43
CHMP1A-203ENST00000547614 SCN4AP35499 1836 aa23.99■■□□□ 1.43
CHMP1A-203ENST00000547614 IRS4O14654 1257 aaPredicted RBP23.99■■□□□ 1.43
CHMP1A-203ENST00000547614 GPC2Q8N158 579 aa23.99■■□□□ 1.43
CHMP1A-203ENST00000547614 LARGE2Q8N3Y3 721 aa23.99■■□□□ 1.43
CHMP1A-203ENST00000547614 MYD88Q99836 296 aa23.99■■□□□ 1.43
CHMP1A-203ENST00000547614 DDX60Q8IY21 1712 aaKnown RBP23.98■■□□□ 1.43
CHMP1A-203ENST00000547614 EIF6P56537 245 aaKnown RBP23.98■■□□□ 1.43
CHMP1A-203ENST00000547614 KSR2Q6VAB6 950 aa23.98■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms