RNA–Protein interactions for RNA: ENST00000545042.1

DDX55-213, Transcript of DEAD-box helicase 55, humanhuman

TSL 5

Gene DDX55, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-213ENST00000545042 PRPF40BQ6NWY9 871 aaKnown RBP17.05■□□□□ 0.32
DDX55-213ENST00000545042 RPGRQ92834 1020 aaKnown RBP17.05■□□□□ 0.32
DDX55-213ENST00000545042 PHAXQ9H814 394 aaKnown RBP17.05■□□□□ 0.32
DDX55-213ENST00000545042 ZNF219Q9P2Y4 722 aaPredicted RBP17.05■□□□□ 0.32
DDX55-213ENST00000545042 TRMT112Q9UI30 125 aaKnown RBP17.05■□□□□ 0.32
DDX55-213ENST00000545042 ANKRD36CQ5JPF3 1778 aa17.05■□□□□ 0.32
DDX55-213ENST00000545042 ADCY9O60503 1353 aa17.04■□□□□ 0.32
DDX55-213ENST00000545042 C9orf131Q5VYM1 1079 aa17.04■□□□□ 0.32
DDX55-213ENST00000545042 NLRP3Q96P20 1036 aa17.04■□□□□ 0.32
DDX55-213ENST00000545042 EXOSC9Q06265 439 aaKnown RBP17.03■□□□□ 0.32
DDX55-213ENST00000545042 CRY2Q49AN0 593 aa17.03■□□□□ 0.32
DDX55-213ENST00000545042 RNF181Q9P0P0 153 aa17.03■□□□□ 0.32
DDX55-213ENST00000545042 SH3TC1Q8TE82 1336 aa17.02■□□□□ 0.32
DDX55-213ENST00000545042 ATP5J2-PTCD1G3V325 749 aa17.02■□□□□ 0.32
DDX55-213ENST00000545042 LMNB1P20700 586 aa17.02■□□□□ 0.32
DDX55-213ENST00000545042 RASSF7Q02833 373 aa17.02■□□□□ 0.32
DDX55-213ENST00000545042 SLC10A5Q5PT55 438 aa17.02■□□□□ 0.32
DDX55-213ENST00000545042 RBM17Q96I25 401 aaKnown RBP17.02■□□□□ 0.32
DDX55-213ENST00000545042 ISCA1Q9BUE6 129 aa17.02■□□□□ 0.32
DDX55-213ENST00000545042 GPBP1L1Q9HC44 474 aaPredicted RBP17.02■□□□□ 0.32
DDX55-213ENST00000545042 TCERG1O14776 1098 aaKnown RBP17.01■□□□□ 0.31
DDX55-213ENST00000545042 SLC4A2P04920 1241 aa17.01■□□□□ 0.31
DDX55-213ENST00000545042 TRIM28Q13263 835 aaKnown RBP17.01■□□□□ 0.31
DDX55-213ENST00000545042 ZNF526Q8TF50 670 aaPredicted RBP17.01■□□□□ 0.31
DDX55-213ENST00000545042 TNRC6CQ9HCJ0 1690 aaKnown RBP17.01■□□□□ 0.31
DDX55-213ENST00000545042 SLX4Q8IY92 1834 aa17■□□□□ 0.31
DDX55-213ENST00000545042 ARFGEF2Q9Y6D5 1785 aa17■□□□□ 0.31
DDX55-213ENST00000545042 HOXA10P31260 410 aaPredicted RBP17■□□□□ 0.31
DDX55-213ENST00000545042 CCDC93Q567U6 631 aa17■□□□□ 0.31
DDX55-213ENST00000545042 MYD88Q99836 296 aa17■□□□□ 0.31
DDX55-213ENST00000545042 SPINK5Q9NQ38 1064 aaPredicted RBP17■□□□□ 0.31
DDX55-213ENST00000545042 ZNF521Q96K83 1311 aa16.99■□□□□ 0.31
DDX55-213ENST00000545042 CACNA1SQ13698 1873 aa16.99■□□□□ 0.31
DDX55-213ENST00000545042 NFKBIEO00221 500 aa16.99■□□□□ 0.31
DDX55-213ENST00000545042 VAMP4O75379 141 aa16.99■□□□□ 0.31
DDX55-213ENST00000545042 KSR2Q6VAB6 950 aa16.99■□□□□ 0.31
DDX55-213ENST00000545042 CRAMP1Q96RY5 1269 aa16.99■□□□□ 0.31
DDX55-213ENST00000545042 METTL22Q9BUU2 404 aaPredicted RBP16.99■□□□□ 0.31
DDX55-213ENST00000545042 TAOK3Q9H2K8 898 aa16.99■□□□□ 0.31
DDX55-213ENST00000545042 MAP3K2Q9Y2U5 619 aa16.99■□□□□ 0.31
DDX55-213ENST00000545042 LTBP3Q9NS15 1303 aa16.98■□□□□ 0.31
DDX55-213ENST00000545042 E9PSI1 815 aa16.98■□□□□ 0.31
DDX55-213ENST00000545042 HCLS1P14317 486 aaPredicted RBP16.98■□□□□ 0.31
DDX55-213ENST00000545042 HSP90B1P14625 803 aaKnown RBP16.98■□□□□ 0.31
DDX55-213ENST00000545042 NEXNQ0ZGT2 675 aa16.98■□□□□ 0.31
DDX55-213ENST00000545042 RTKN2Q8IZC4 609 aa16.98■□□□□ 0.31
DDX55-213ENST00000545042 C7orf43Q8WVR3 580 aa16.98■□□□□ 0.31
DDX55-213ENST00000545042 ZNF428Q96B54 188 aa16.98■□□□□ 0.31
DDX55-213ENST00000545042 TMX4Q9H1E5 349 aaPredicted RBP16.98■□□□□ 0.31
DDX55-213ENST00000545042 ZC3H4Q9UPT8 1303 aaKnown RBP16.97■□□□□ 0.31
DDX55-213ENST00000545042 PI4KAP2A4QPH2 592 aa16.97■□□□□ 0.31
DDX55-213ENST00000545042 CC2D2BQ6DHV5 1058 aa16.97■□□□□ 0.31
DDX55-213ENST00000545042 C3orf67Q6ZVT6 689 aa16.97■□□□□ 0.31
DDX55-213ENST00000545042 SYNE4Q8N205 404 aa16.97■□□□□ 0.31
DDX55-213ENST00000545042 PI4KAP1Q8N8J0 262 aa16.97■□□□□ 0.31
DDX55-213ENST00000545042 CCDC191Q8NCU4 936 aa16.97■□□□□ 0.31
DDX55-213ENST00000545042 FAM89AQ96GI7 184 aa16.97■□□□□ 0.31
DDX55-213ENST00000545042 CWC25Q9NXE8 425 aaPredicted RBP16.97■□□□□ 0.31
DDX55-213ENST00000545042 SBF1O95248 1867 aa16.97■□□□□ 0.31
DDX55-213ENST00000545042 FLIIQ13045 1269 aa16.96■□□□□ 0.31
DDX55-213ENST00000545042 FKBP5Q13451 457 aaPredicted RBP16.96■□□□□ 0.31
DDX55-213ENST00000545042 GRIPAP1Q4V328 841 aa16.96■□□□□ 0.31
DDX55-213ENST00000545042 DDX46Q7L014 1031 aaKnown RBP16.96■□□□□ 0.31
DDX55-213ENST00000545042 MIER1Q8N108 512 aa16.96■□□□□ 0.31
DDX55-213ENST00000545042 ZBTB38Q8NAP3 1195 aaPredicted RBP16.96■□□□□ 0.31
DDX55-213ENST00000545042 FER1L6Q2WGJ9 1857 aa16.95■□□□□ 0.3
DDX55-213ENST00000545042 PPEF1O14829 653 aaPredicted RBP16.95■□□□□ 0.3
DDX55-213ENST00000545042 RTL5Q5HYW3 569 aaPredicted RBP16.95■□□□□ 0.3
DDX55-213ENST00000545042 G2E3Q7L622 706 aa16.95■□□□□ 0.3
DDX55-213ENST00000545042 CACNA1FO60840 1977 aa16.95■□□□□ 0.3
DDX55-213ENST00000545042 KDM2BQ8NHM5 1336 aa16.95■□□□□ 0.3
DDX55-213ENST00000545042 IRS4O14654 1257 aaPredicted RBP16.94■□□□□ 0.3
DDX55-213ENST00000545042 FKBP4Q02790 459 aaKnown RBP eCLIP16.94■□□□□ 0.3
DDX55-213ENST00000545042 BBOX1O75936 387 aa16.93■□□□□ 0.3
DDX55-213ENST00000545042 PCCAP05165 728 aaPredicted RBP16.93■□□□□ 0.3
DDX55-213ENST00000545042 PRELPP51888 382 aa16.93■□□□□ 0.3
DDX55-213ENST00000545042 ABCC4O15439 1325 aa16.93■□□□□ 0.3
DDX55-213ENST00000545042 SLFN5Q08AF3 891 aa16.92■□□□□ 0.3
DDX55-213ENST00000545042 OLFM4Q6UX06 510 aa16.92■□□□□ 0.3
DDX55-213ENST00000545042 DNAAF4Q8WXU2 420 aa16.92■□□□□ 0.3
DDX55-213ENST00000545042 CCDC88AQ3V6T2 1871 aa16.91■□□□□ 0.3
DDX55-213ENST00000545042 GRAPQ13588 217 aa16.91■□□□□ 0.3
DDX55-213ENST00000545042 SF3B3Q15393 1217 aaKnown RBP16.91■□□□□ 0.3
DDX55-213ENST00000545042 DPY19L2Q6NUT2 758 aa16.91■□□□□ 0.3
DDX55-213ENST00000545042 TMC4Q7Z404 712 aa16.91■□□□□ 0.3
DDX55-213ENST00000545042 GRAPLQ8TC17 118 aaPredicted RBP16.91■□□□□ 0.3
DDX55-213ENST00000545042 PSMD1Q99460 953 aa16.91■□□□□ 0.3
DDX55-213ENST00000545042 ATP6V0A2Q9Y487 856 aa16.91■□□□□ 0.3
DDX55-213ENST00000545042 LAMB2P55268 1798 aa16.91■□□□□ 0.3
DDX55-213ENST00000545042 NEURL1BA8MQ27 555 aa16.9■□□□□ 0.3
DDX55-213ENST00000545042 IGKV5-2P06315 115 aa16.9■□□□□ 0.3
DDX55-213ENST00000545042 ZNF277Q9NRM2 450 aaPredicted RBP16.9■□□□□ 0.3
DDX55-213ENST00000545042 DDX60Q8IY21 1712 aaKnown RBP16.9■□□□□ 0.3
DDX55-213ENST00000545042 GLTPD2A6NH11 291 aa16.89■□□□□ 0.29
DDX55-213ENST00000545042 PDE8AO60658 829 aa16.89■□□□□ 0.29
DDX55-213ENST00000545042 C1QTNF8P60827 252 aa16.89■□□□□ 0.29
DDX55-213ENST00000545042 CWF19L2Q2TBE0 894 aaKnown RBP16.89■□□□□ 0.29
DDX55-213ENST00000545042 CCDC152Q4G0S7 254 aa16.89■□□□□ 0.29
DDX55-213ENST00000545042 SP8Q8IXZ3 490 aa16.89■□□□□ 0.29
DDX55-213ENST00000545042 LINS1Q8NG48 757 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms