RNA–Protein interactions for RNA: ENST00000541416.5

SNHG1-216, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 996 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-216ENST00000541416 ABT1Q9ULW3 272 aaKnown RBP16.25■□□□□ 0.19
SNHG1-216ENST00000541416 GJA3Q9Y6H8 435 aa16.25■□□□□ 0.19
SNHG1-216ENST00000541416 NGEFQ8N5V2 710 aa16.24■□□□□ 0.19
SNHG1-216ENST00000541416 BEGAINQ9BUH8 593 aa16.24■□□□□ 0.19
SNHG1-216ENST00000541416 IBTKQ9P2D0 1353 aaPredicted RBP16.24■□□□□ 0.19
SNHG1-216ENST00000541416 ADAMTSL1Q8N6G6 1762 aa16.23■□□□□ 0.19
SNHG1-216ENST00000541416 MAP3K15Q6ZN16 1313 aa16.23■□□□□ 0.19
SNHG1-216ENST00000541416 RIC1Q4ADV7 1423 aa16.23■□□□□ 0.19
SNHG1-216ENST00000541416 LARGE2Q8N3Y3 721 aa16.23■□□□□ 0.19
SNHG1-216ENST00000541416 RBM17Q96I25 401 aaKnown RBP16.23■□□□□ 0.19
SNHG1-216ENST00000541416 WDR33Q9C0J8 1336 aaKnown RBP16.22■□□□□ 0.19
SNHG1-216ENST00000541416 HOXA10P31260 410 aaPredicted RBP16.22■□□□□ 0.19
SNHG1-216ENST00000541416 ECE1P42892 770 aa16.22■□□□□ 0.19
SNHG1-216ENST00000541416 LBX1P52954 281 aa16.22■□□□□ 0.19
SNHG1-216ENST00000541416 NUTM1Q86Y26 1132 aa16.22■□□□□ 0.19
SNHG1-216ENST00000541416 PNNQ9H307 717 aaKnown RBP16.22■□□□□ 0.19
SNHG1-216ENST00000541416 DDX21Q9NR30 783 aaKnown RBP eCLIP16.22■□□□□ 0.191e-323■■■□□ 15.6
SNHG1-216ENST00000541416 RRP7AQ9Y3A4 280 aaKnown RBP16.22■□□□□ 0.19
SNHG1-216ENST00000541416 NUP98P52948 1817 aa16.22■□□□□ 0.19
SNHG1-216ENST00000541416 USP50Q70EL3 339 aaPredicted RBP16.21■□□□□ 0.19
SNHG1-216ENST00000541416 PPP1R42Q7Z4L9 355 aa16.21■□□□□ 0.19
SNHG1-216ENST00000541416 NIM1KQ8IY84 436 aa16.21■□□□□ 0.19
SNHG1-216ENST00000541416 CRAMP1Q96RY5 1269 aa16.21■□□□□ 0.19
SNHG1-216ENST00000541416 MIS18AQ9NYP9 233 aa16.21■□□□□ 0.19
SNHG1-216ENST00000541416 ABCC12Q96J65 1359 aa16.21■□□□□ 0.19
SNHG1-216ENST00000541416 PPEF1O14829 653 aaPredicted RBP16.2■□□□□ 0.18
SNHG1-216ENST00000541416 PAXIP1Q6ZW49 1069 aaPredicted RBP16.2■□□□□ 0.18
SNHG1-216ENST00000541416 VPS33BQ9H267 617 aa16.2■□□□□ 0.18
SNHG1-216ENST00000541416 ERBB4Q15303 1308 aa16.19■□□□□ 0.18
SNHG1-216ENST00000541416 MYL6BP14649 208 aa16.19■□□□□ 0.18
SNHG1-216ENST00000541416 GPTP24298 496 aa16.19■□□□□ 0.18
SNHG1-216ENST00000541416 SUPT20HQ8NEM7 779 aa16.19■□□□□ 0.18
SNHG1-216ENST00000541416 NLRP3Q96P20 1036 aa16.19■□□□□ 0.18
SNHG1-216ENST00000541416 SNED1Q8TER0 1413 aa16.19■□□□□ 0.18
SNHG1-216ENST00000541416 EIF4A1P60842 406 aaKnown RBP16.18■□□□□ 0.18
SNHG1-216ENST00000541416 PARP10Q53GL7 1025 aa16.18■□□□□ 0.18
SNHG1-216ENST00000541416 ZBTB3Q9H5J0 574 aa16.18■□□□□ 0.18
SNHG1-216ENST00000541416 MAPK8IP3Q9UPT6 1336 aa16.18■□□□□ 0.18
SNHG1-216ENST00000541416 PPIP5K2O43314 1243 aa16.17■□□□□ 0.18
SNHG1-216ENST00000541416 HSPA8P11142 646 aaKnown RBP16.17■□□□□ 0.18
SNHG1-216ENST00000541416 SCNN1DP51172 638 aa16.17■□□□□ 0.18
SNHG1-216ENST00000541416 GIGYF2Q6Y7W6 1299 aaKnown RBP16.17■□□□□ 0.18
SNHG1-216ENST00000541416 TTLL7Q6ZT98 887 aa16.17■□□□□ 0.18
SNHG1-216ENST00000541416 KDM3BQ7LBC6 1761 aa16.17■□□□□ 0.18
SNHG1-216ENST00000541416 UBN2Q6ZU65 1347 aa16.17■□□□□ 0.18
SNHG1-216ENST00000541416 TCERG1O14776 1098 aaKnown RBP16.16■□□□□ 0.18
SNHG1-216ENST00000541416 EPS15P42566 896 aa16.16■□□□□ 0.18
SNHG1-216ENST00000541416 NFE2L2Q16236 605 aa16.16■□□□□ 0.18
SNHG1-216ENST00000541416 SUSD4Q5VX71 490 aa16.16■□□□□ 0.18
SNHG1-216ENST00000541416 ZNF34Q8IZ26 560 aa16.16■□□□□ 0.18
SNHG1-216ENST00000541416 CAPNS2Q96L46 248 aa16.16■□□□□ 0.18
SNHG1-216ENST00000541416 ADARB2Q9NS39 739 aaKnown RBP16.16■□□□□ 0.18
SNHG1-216ENST00000541416 DLG5Q8TDM6 1919 aa16.15■□□□□ 0.18
SNHG1-216ENST00000541416 NTSR2O95665 410 aa16.15■□□□□ 0.18
SNHG1-216ENST00000541416 ABHD8Q96I13 439 aa16.15■□□□□ 0.18
SNHG1-216ENST00000541416 GPR101Q96P66 508 aaPredicted RBP16.15■□□□□ 0.18
SNHG1-216ENST00000541416 ATP6V0A2Q9Y487 856 aa16.15■□□□□ 0.18
SNHG1-216ENST00000541416 TRPM7Q96QT4 1865 aa16.14■□□□□ 0.17
SNHG1-216ENST00000541416 GRM1Q13255 1194 aa16.14■□□□□ 0.17
SNHG1-216ENST00000541416 UTP14AQ9BVJ6 771 aaKnown RBP16.14■□□□□ 0.17
SNHG1-216ENST00000541416 ZNRF3Q9ULT6 936 aa16.14■□□□□ 0.17
SNHG1-216ENST00000541416 CA12O43570 354 aa16.13■□□□□ 0.17
SNHG1-216ENST00000541416 BBOX1O75936 387 aa16.13■□□□□ 0.17
SNHG1-216ENST00000541416 MAP2K2P36507 400 aa16.13■□□□□ 0.17
SNHG1-216ENST00000541416 HSP90AB3PQ58FF7 597 aa16.13■□□□□ 0.17
SNHG1-216ENST00000541416 GPRC5DQ9NZD1 345 aa16.13■□□□□ 0.17
SNHG1-216ENST00000541416 TSPYL4Q9UJ04 414 aa16.13■□□□□ 0.17
SNHG1-216ENST00000541416 TLL2Q9Y6L7 1015 aa16.13■□□□□ 0.17
SNHG1-216ENST00000541416 CDHR2Q9BYE9 1310 aa16.13■□□□□ 0.17
SNHG1-216ENST00000541416 COL4A5P29400 1685 aa16.12■□□□□ 0.17
SNHG1-216ENST00000541416 LTBP1Q14766 1721 aa16.12■□□□□ 0.17
SNHG1-216ENST00000541416 AOC3Q16853 763 aa16.12■□□□□ 0.17
SNHG1-216ENST00000541416 CYP4F22Q6NT55 531 aa16.12■□□□□ 0.17
SNHG1-216ENST00000541416 DPP8Q6V1X1 898 aaPredicted RBP16.12■□□□□ 0.17
SNHG1-216ENST00000541416 THSD7BQ9C0I4 1608 aa16.12■□□□□ 0.17
SNHG1-216ENST00000541416 TNIP1Q15025 636 aa16.11■□□□□ 0.17
SNHG1-216ENST00000541416 SLC10A5Q5PT55 438 aa16.11■□□□□ 0.17
SNHG1-216ENST00000541416 PLEKHF1Q96S99 279 aa16.11■□□□□ 0.17
SNHG1-216ENST00000541416 BCL2L13Q9BXK5 485 aa16.11■□□□□ 0.17
SNHG1-216ENST00000541416 RTFDC1Q9BY42 306 aaPredicted RBP16.11■□□□□ 0.17
SNHG1-216ENST00000541416 BABAM1Q9NWV8 329 aa16.11■□□□□ 0.17
SNHG1-216ENST00000541416 TRAF5O00463 557 aa16.1■□□□□ 0.17
SNHG1-216ENST00000541416 EIF2S2P20042 333 aaKnown RBP16.1■□□□□ 0.17
SNHG1-216ENST00000541416 CXCL9Q07325 125 aa16.1■□□□□ 0.17
SNHG1-216ENST00000541416 CST9Q5W186 159 aa16.1■□□□□ 0.17
SNHG1-216ENST00000541416 CIAPIN1Q6FI81 312 aa16.1■□□□□ 0.17
SNHG1-216ENST00000541416 DDX46Q7L014 1031 aaKnown RBP16.1■□□□□ 0.17
SNHG1-216ENST00000541416 SP8Q8IXZ3 490 aa16.1■□□□□ 0.17
SNHG1-216ENST00000541416 MPNDQ8N594 471 aa16.1■□□□□ 0.17
SNHG1-216ENST00000541416 ZC3H15Q8WU90 426 aaKnown RBP16.1■□□□□ 0.17
SNHG1-216ENST00000541416 HHIPL1Q96JK4 782 aa16.1■□□□□ 0.17
SNHG1-216ENST00000541416 THUMPD2Q9BTF0 503 aaKnown RBP16.1■□□□□ 0.17
SNHG1-216ENST00000541416 ABCC4O15439 1325 aa16.1■□□□□ 0.17
SNHG1-216ENST00000541416 CELF2O95319 508 aaKnown RBP16.09■□□□□ 0.17
SNHG1-216ENST00000541416 LMOD3Q0VAK6 560 aa16.09■□□□□ 0.17
SNHG1-216ENST00000541416 TMC4Q7Z404 712 aa16.09■□□□□ 0.17
SNHG1-216ENST00000541416 GMPSP49915 693 aaPredicted RBP16.08■□□□□ 0.16
SNHG1-216ENST00000541416 KIAA2012Q0VF49 1180 aa16.08■□□□□ 0.16
SNHG1-216ENST00000541416 C3orf67Q6ZVT6 689 aa16.08■□□□□ 0.16
SNHG1-216ENST00000541416 SAPCD2Q86UD0 394 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms