RNA–Protein interactions for RNA: ENST00000540537.5

CHFR-217, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 913 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-217ENST00000540537 AIMP1Q12904 312 aaKnown RBP27.28■■□□□ 1.96
CHFR-217ENST00000540537 HSP90AB3PQ58FF7 597 aa27.28■■□□□ 1.96
CHFR-217ENST00000540537 CHPF2Q9P2E5 772 aa27.27■■□□□ 1.96
CHFR-217ENST00000540537 RNF123Q5XPI4 1314 aa27.26■■□□□ 1.95
CHFR-217ENST00000540537 HOXA10P31260 410 aaPredicted RBP27.26■■□□□ 1.95
CHFR-217ENST00000540537 GNAI1P63096 354 aa27.26■■□□□ 1.95
CHFR-217ENST00000540537 CCDC184Q52MB2 194 aa27.26■■□□□ 1.95
CHFR-217ENST00000540537 DUSP27Q5VZP5 1158 aa27.26■■□□□ 1.95
CHFR-217ENST00000540537 UTP14AQ9BVJ6 771 aaKnown RBP27.26■■□□□ 1.95
CHFR-217ENST00000540537 DPY19L2Q6NUT2 758 aa27.25■■□□□ 1.95
CHFR-217ENST00000540537 RTKN2Q8IZC4 609 aa27.25■■□□□ 1.95
CHFR-217ENST00000540537 RPGRQ92834 1020 aaKnown RBP27.25■■□□□ 1.95
CHFR-217ENST00000540537 DBF4Q9UBU7 674 aaPredicted RBP27.25■■□□□ 1.95
CHFR-217ENST00000540537 FKBP4Q02790 459 aaKnown RBP eCLIP27.24■■□□□ 1.95
CHFR-217ENST00000540537 TCIRG1Q13488 830 aa27.23■■□□□ 1.95
CHFR-217ENST00000540537 WDR90Q96KV7 1748 aa27.23■■□□□ 1.95
CHFR-217ENST00000540537 VEGFAP15692 232 aaPredicted RBP27.22■■□□□ 1.95
CHFR-217ENST00000540537 FSTL1Q12841 308 aa27.22■■□□□ 1.95
CHFR-217ENST00000540537 SLC10A5Q5PT55 438 aa27.22■■□□□ 1.95
CHFR-217ENST00000540537 OLFM4Q6UX06 510 aa27.22■■□□□ 1.95
CHFR-217ENST00000540537 NLRP10Q86W26 655 aa27.22■■□□□ 1.95
CHFR-217ENST00000540537 RBM17Q96I25 401 aaKnown RBP27.21■■□□□ 1.95
CHFR-217ENST00000540537 NLRP3Q96P20 1036 aa27.21■■□□□ 1.95
CHFR-217ENST00000540537 CRAMP1Q96RY5 1269 aa27.21■■□□□ 1.95
CHFR-217ENST00000540537 HYPKQ9NX55 129 aa27.21■■□□□ 1.95
CHFR-217ENST00000540537 ANP32CO43423 234 aa27.2■■□□□ 1.94
CHFR-217ENST00000540537 APLP1P51693 650 aa27.2■■□□□ 1.94
CHFR-217ENST00000540537 CC2D2BQ6DHV5 1058 aa27.2■■□□□ 1.94
CHFR-217ENST00000540537 PLBD2Q8NHP8 589 aa27.2■■□□□ 1.94
CHFR-217ENST00000540537 SNED1Q8TER0 1413 aa27.2■■□□□ 1.94
CHFR-217ENST00000540537 C3orf67Q6ZVT6 689 aa27.19■■□□□ 1.94
CHFR-217ENST00000540537 ANKRD13DQ6ZTN6 518 aa27.18■■□□□ 1.94
CHFR-217ENST00000540537 PSMD1Q99460 953 aa27.18■■□□□ 1.94
CHFR-217ENST00000540537 ZNF277Q9NRM2 450 aaPredicted RBP27.18■■□□□ 1.94
CHFR-217ENST00000540537 CCDC27Q2M243 656 aa27.17■■□□□ 1.94
CHFR-217ENST00000540537 GRIPAP1Q4V328 841 aa27.17■■□□□ 1.94
CHFR-217ENST00000540537 SMC1BQ8NDV3 1235 aa27.17■■□□□ 1.94
CHFR-217ENST00000540537 POTECB2RU33 542 aa27.16■■□□□ 1.94
CHFR-217ENST00000540537 SYNE4Q8N205 404 aa27.16■■□□□ 1.94
CHFR-217ENST00000540537 MRS2Q9HD23 443 aa27.16■■□□□ 1.94
CHFR-217ENST00000540537 TRMT112Q9UI30 125 aaKnown RBP27.16■■□□□ 1.94
CHFR-217ENST00000540537 SH3TC1Q8TE82 1336 aa27.16■■□□□ 1.94
CHFR-217ENST00000540537 LAMB2P55268 1798 aa27.15■■□□□ 1.94
CHFR-217ENST00000540537 PPEF1O14829 653 aaPredicted RBP27.14■■□□□ 1.94
CHFR-217ENST00000540537 IARSP41252 1262 aaKnown RBP27.14■■□□□ 1.94
CHFR-217ENST00000540537 NCBP3Q53F19 620 aaKnown RBP27.14■■□□□ 1.94
CHFR-217ENST00000540537 ISCA1Q9BUE6 129 aa27.14■■□□□ 1.94
CHFR-217ENST00000540537 ELL2O00472 640 aaPredicted RBP27.13■■□□□ 1.93
CHFR-217ENST00000540537 DDNO94850 711 aaPredicted RBP27.13■■□□□ 1.93
CHFR-217ENST00000540537 C8orf58Q8NAV2 365 aa27.13■■□□□ 1.93
CHFR-217ENST00000540537 CHMP4AQ9BY43 222 aa27.13■■□□□ 1.93
CHFR-217ENST00000540537 HCLS1P14317 486 aaPredicted RBP27.12■■□□□ 1.93
CHFR-217ENST00000540537 ABCC4O15439 1325 aa27.12■■□□□ 1.93
CHFR-217ENST00000540537 WWC1Q8IX03 1113 aa27.11■■□□□ 1.93
CHFR-217ENST00000540537 GOLGA2Q08379 1002 aa27.1■■□□□ 1.93
CHFR-217ENST00000540537 L3MBTL3Q96JM7 780 aaPredicted RBP27.1■■□□□ 1.93
CHFR-217ENST00000540537 TRIM28Q13263 835 aaKnown RBP27.09■■□□□ 1.93
CHFR-217ENST00000540537 CCDC30Q5VVM6 783 aa27.09■■□□□ 1.93
CHFR-217ENST00000540537 TMX4Q9H1E5 349 aaPredicted RBP27.09■■□□□ 1.93
CHFR-217ENST00000540537 ATP6V0A2Q9Y487 856 aa27.09■■□□□ 1.93
CHFR-217ENST00000540537 ZNF541Q9H0D2 1346 aa27.09■■□□□ 1.93
CHFR-217ENST00000540537 SCN4AP35499 1836 aa27.09■■□□□ 1.93
CHFR-217ENST00000540537 DDX60Q8IY21 1712 aaKnown RBP27.08■■□□□ 1.93
CHFR-217ENST00000540537 ATP5J2-PTCD1G3V325 749 aa27.08■■□□□ 1.93
CHFR-217ENST00000540537 FZD9O00144 591 aa27.08■■□□□ 1.93
CHFR-217ENST00000540537 RIC3Q7Z5B4 369 aa27.08■■□□□ 1.93
CHFR-217ENST00000540537 PHAXQ9H814 394 aaKnown RBP27.08■■□□□ 1.93
CHFR-217ENST00000540537 IL16Q14005 1332 aa27.08■■□□□ 1.93
CHFR-217ENST00000540537 IQCA1LA6NCM1 817 aa27.07■■□□□ 1.92
CHFR-217ENST00000540537 TCERG1O14776 1098 aaKnown RBP27.07■■□□□ 1.92
CHFR-217ENST00000540537 BBOX1O75936 387 aa27.07■■□□□ 1.92
CHFR-217ENST00000540537 JDP2Q8WYK2 163 aa27.07■■□□□ 1.92
CHFR-217ENST00000540537 TSR2Q969E8 191 aaKnown RBP27.07■■□□□ 1.92
CHFR-217ENST00000540537 DDX46Q7L014 1031 aaKnown RBP27.06■■□□□ 1.92
CHFR-217ENST00000540537 SLC51AQ86UW1 340 aa27.06■■□□□ 1.92
CHFR-217ENST00000540537 TSPYL6Q8N831 410 aa27.06■■□□□ 1.92
CHFR-217ENST00000540537 FAM89AQ96GI7 184 aa27.05■■□□□ 1.92
CHFR-217ENST00000540537 GRAPQ13588 217 aa27.04■■□□□ 1.92
CHFR-217ENST00000540537 DNAJC5GQ8N7S2 189 aa27.04■■□□□ 1.92
CHFR-217ENST00000540537 GRAPLQ8TC17 118 aaPredicted RBP27.04■■□□□ 1.92
CHFR-217ENST00000540537 ZNF428Q96B54 188 aa27.04■■□□□ 1.92
CHFR-217ENST00000540537 COL4A5P29400 1685 aa27.04■■□□□ 1.92
CHFR-217ENST00000540537 SP8Q8IXZ3 490 aa27.03■■□□□ 1.92
CHFR-217ENST00000540537 LARGE2Q8N3Y3 721 aa27.03■■□□□ 1.92
CHFR-217ENST00000540537 DDX58O95786 925 aaKnown RBP27.02■■□□□ 1.92
CHFR-217ENST00000540537 SF3B3Q15393 1217 aaKnown RBP27.02■■□□□ 1.92
CHFR-217ENST00000540537 GPC2Q8N158 579 aa27.02■■□□□ 1.92
CHFR-217ENST00000540537 VPS33BQ9H267 617 aa27.02■■□□□ 1.92
CHFR-217ENST00000540537 CHADLQ6NUI6 762 aa27.01■■□□□ 1.91
CHFR-217ENST00000540537 TMC4Q7Z404 712 aa27.01■■□□□ 1.91
CHFR-217ENST00000540537 SUPT20HQ8NEM7 779 aa27.01■■□□□ 1.91
CHFR-217ENST00000540537 RTFDC1Q9BY42 306 aaPredicted RBP27.01■■□□□ 1.91
CHFR-217ENST00000540537 TAF1DQ9H5J8 278 aaPredicted RBP27.01■■□□□ 1.91
CHFR-217ENST00000540537 TAF1P21675 1872 aa27.01■■□□□ 1.91
CHFR-217ENST00000540537 EIF6P56537 245 aaKnown RBP27■■□□□ 1.91
CHFR-217ENST00000540537 ZBTB38Q8NAP3 1195 aaPredicted RBP27■■□□□ 1.91
CHFR-217ENST00000540537 MYD88Q99836 296 aa27■■□□□ 1.91
CHFR-217ENST00000540537 IRS4O14654 1257 aaPredicted RBP26.99■■□□□ 1.91
CHFR-217ENST00000540537 HTRA3P83110 453 aa26.99■■□□□ 1.91
CHFR-217ENST00000540537 TWISTNBQ3B726 338 aaPredicted RBP26.99■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms