RNA–Protein interactions for RNA: ENST00000539662.1

HMGA2-209, Transcript of high mobility group AT-hook 2, human

TSL 3

Gene HMGA2, Length 485 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGA2-209	ENST00000539662	ISCA1	Q9BUE6	129 aa		13.81	□□□□□ -0.2
HMGA2-209	ENST00000539662	GTF2E1	P29083	439 aa	Predicted RBP	13.8	□□□□□ -0.2
HMGA2-209	ENST00000539662	SLFN5	Q08AF3	891 aa		13.8	□□□□□ -0.2
HMGA2-209	ENST00000539662	RIC3	Q7Z5B4	369 aa		13.8	□□□□□ -0.2
HMGA2-209	ENST00000539662	TTLL6	Q8N841	843 aa		13.8	□□□□□ -0.2
HMGA2-209	ENST00000539662	JARID2	Q92833	1246 aa	Predicted RBP	13.8	□□□□□ -0.2
HMGA2-209	ENST00000539662	DDX60	Q8IY21	1712 aa	Known RBP	13.8	□□□□□ -0.2
HMGA2-209	ENST00000539662	ADCY9	O60503	1353 aa		13.8	□□□□□ -0.2
HMGA2-209	ENST00000539662	TAF1	P21675	1872 aa		13.8	□□□□□ -0.2
HMGA2-209	ENST00000539662	COL4A1	P02462	1669 aa		13.79	□□□□□ -0.2
HMGA2-209	ENST00000539662	SBF1	O95248	1867 aa		13.79	□□□□□ -0.2
HMGA2-209	ENST00000539662	C21orf2	O43822	256 aa		13.79	□□□□□ -0.2
HMGA2-209	ENST00000539662	HCLS1	P14317	486 aa	Predicted RBP	13.79	□□□□□ -0.2
HMGA2-209	ENST00000539662	RASSF7	Q02833	373 aa		13.79	□□□□□ -0.2
HMGA2-209	ENST00000539662	RTL5	Q5HYW3	569 aa	Predicted RBP	13.79	□□□□□ -0.2
HMGA2-209	ENST00000539662	MYD88	Q99836	296 aa		13.79	□□□□□ -0.2
HMGA2-209	ENST00000539662	UTP14A	Q9BVJ6	771 aa	Known RBP	13.79	□□□□□ -0.2
HMGA2-209	ENST00000539662	NYX	Q9GZU5	481 aa		13.79	□□□□□ -0.2
HMGA2-209	ENST00000539662	MYH16	Q9H6N6	1097 aa		13.79	□□□□□ -0.2
HMGA2-209	ENST00000539662	IBTK	Q9P2D0	1353 aa	Predicted RBP	13.79	□□□□□ -0.2
HMGA2-209	ENST00000539662	PI4KAP2	A4QPH2	592 aa		13.78	□□□□□ -0.2
HMGA2-209	ENST00000539662	PARP10	Q53GL7	1025 aa		13.78	□□□□□ -0.2
HMGA2-209	ENST00000539662	HSP90AB3P	Q58FF7	597 aa		13.78	□□□□□ -0.2
HMGA2-209	ENST00000539662	STYK1	Q6J9G0	422 aa		13.78	□□□□□ -0.2
HMGA2-209	ENST00000539662	PRPF40B	Q6NWY9	871 aa	Known RBP	13.78	□□□□□ -0.2
HMGA2-209	ENST00000539662	PPP1R42	Q7Z4L9	355 aa		13.78	□□□□□ -0.2
HMGA2-209	ENST00000539662	PI4KAP1	Q8N8J0	262 aa		13.78	□□□□□ -0.2
HMGA2-209	ENST00000539662	MASTL	Q96GX5	879 aa		13.78	□□□□□ -0.2
HMGA2-209	ENST00000539662	TRMT112	Q9UI30	125 aa	Known RBP	13.78	□□□□□ -0.2
HMGA2-209	ENST00000539662	MAP3K2	Q9Y2U5	619 aa		13.78	□□□□□ -0.2
HMGA2-209	ENST00000539662	CCDC88A	Q3V6T2	1871 aa		13.78	□□□□□ -0.2
HMGA2-209	ENST00000539662	IGKV5-2	P06315	115 aa		13.77	□□□□□ -0.21
HMGA2-209	ENST00000539662	CRY2	Q49AN0	593 aa		13.77	□□□□□ -0.21
HMGA2-209	ENST00000539662	SLC10A5	Q5PT55	438 aa		13.77	□□□□□ -0.21
HMGA2-209	ENST00000539662	TRMT2A	Q8IZ69	625 aa	Known RBP	13.77	□□□□□ -0.21
HMGA2-209	ENST00000539662	ZNF784	Q8NCA9	323 aa	Predicted RBP	13.77	□□□□□ -0.21
HMGA2-209	ENST00000539662	FAM89A	Q96GI7	184 aa		13.77	□□□□□ -0.21
HMGA2-209	ENST00000539662	STK31	Q9BXU1	1019 aa		13.77	□□□□□ -0.21
HMGA2-209	ENST00000539662	FER1L6	Q2WGJ9	1857 aa		13.76	□□□□□ -0.21
HMGA2-209	ENST00000539662	RIC1	Q4ADV7	1423 aa		13.76	□□□□□ -0.21
HMGA2-209	ENST00000539662	NFKBIE	O00221	500 aa		13.76	□□□□□ -0.21
HMGA2-209	ENST00000539662	NPR1	P16066	1061 aa		13.76	□□□□□ -0.21
HMGA2-209	ENST00000539662	FLII	Q13045	1269 aa		13.76	□□□□□ -0.21
HMGA2-209	ENST00000539662	KSR2	Q6VAB6	950 aa		13.76	□□□□□ -0.21
HMGA2-209	ENST00000539662	C7orf43	Q8WVR3	580 aa		13.76	□□□□□ -0.21
HMGA2-209	ENST00000539662	METTL22	Q9BUU2	404 aa	Predicted RBP	13.76	□□□□□ -0.21
HMGA2-209	ENST00000539662	CACNA1F	O60840	1977 aa		13.75	□□□□□ -0.21
HMGA2-209	ENST00000539662		E9PSI1	815 aa		13.75	□□□□□ -0.21
HMGA2-209	ENST00000539662	CWF19L2	Q2TBE0	894 aa	Known RBP	13.75	□□□□□ -0.21
HMGA2-209	ENST00000539662	CNKSR1	Q969H4	720 aa		13.75	□□□□□ -0.21
HMGA2-209	ENST00000539662	PDZRN3	Q9UPQ7	1066 aa		13.75	□□□□□ -0.21
HMGA2-209	ENST00000539662	SH3TC1	Q8TE82	1336 aa		13.74	□□□□□ -0.21
HMGA2-209	ENST00000539662		F6X3S4	739 aa		13.74	□□□□□ -0.21
HMGA2-209	ENST00000539662	TRIM28	Q13263	835 aa	Known RBP	13.74	□□□□□ -0.21
HMGA2-209	ENST00000539662	C9orf131	Q5VYM1	1079 aa		13.74	□□□□□ -0.21
HMGA2-209	ENST00000539662	DDX58	O95786	925 aa	Known RBP	13.73	□□□□□ -0.21
HMGA2-209	ENST00000539662	HOXA10	P31260	410 aa	Predicted RBP	13.73	□□□□□ -0.21
HMGA2-209	ENST00000539662	FKBP5	Q13451	457 aa	Predicted RBP	13.73	□□□□□ -0.21
HMGA2-209	ENST00000539662	ZNF526	Q8TF50	670 aa	Predicted RBP	13.73	□□□□□ -0.21
HMGA2-209	ENST00000539662	NLRP3	Q96P20	1036 aa		13.73	□□□□□ -0.21
HMGA2-209	ENST00000539662	SNED1	Q8TER0	1413 aa		13.73	□□□□□ -0.21
HMGA2-209	ENST00000539662	HNRNPU	Q00839	825 aa	Known RBP eCLIP	13.72	□□□□□ -0.21	6e-6	■□□□□ 8.3
HMGA2-209	ENST00000539662	MRPL50	Q8N5N7	158 aa	Known RBP	13.72	□□□□□ -0.21
HMGA2-209	ENST00000539662	SSH1	Q8WYL5	1049 aa		13.72	□□□□□ -0.21
HMGA2-209	ENST00000539662	RPGR	Q92834	1020 aa	Known RBP	13.72	□□□□□ -0.21
HMGA2-209	ENST00000539662	BCL2L13	Q9BXK5	485 aa		13.72	□□□□□ -0.21
HMGA2-209	ENST00000539662	ABCC4	O15439	1325 aa		13.71	□□□□□ -0.21
HMGA2-209	ENST00000539662	NEURL1B	A8MQ27	555 aa		13.71	□□□□□ -0.21
HMGA2-209	ENST00000539662	IRS4	O14654	1257 aa	Predicted RBP	13.71	□□□□□ -0.21
HMGA2-209	ENST00000539662	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	13.71	□□□□□ -0.21
HMGA2-209	ENST00000539662	CCDC191	Q8NCU4	936 aa		13.71	□□□□□ -0.21
HMGA2-209	ENST00000539662	CHMP4A	Q9BY43	222 aa		13.71	□□□□□ -0.21
HMGA2-209	ENST00000539662	CWC25	Q9NXE8	425 aa	Predicted RBP	13.71	□□□□□ -0.21
HMGA2-209	ENST00000539662	RNF181	Q9P0P0	153 aa		13.71	□□□□□ -0.21
HMGA2-209	ENST00000539662	RNF123	Q5XPI4	1314 aa		13.7	□□□□□ -0.22
HMGA2-209	ENST00000539662	ALDH1B1	P30837	517 aa		13.7	□□□□□ -0.22
HMGA2-209	ENST00000539662	DNAAF4	Q8WXU2	420 aa		13.7	□□□□□ -0.22
HMGA2-209	ENST00000539662	RBM17	Q96I25	401 aa	Known RBP	13.7	□□□□□ -0.22
HMGA2-209	ENST00000539662	CCDC85A	Q96PX6	553 aa	Predicted RBP	13.7	□□□□□ -0.22
HMGA2-209	ENST00000539662	CRAMP1	Q96RY5	1269 aa		13.7	□□□□□ -0.22
HMGA2-209	ENST00000539662	TIAM2	Q8IVF5	1701 aa		13.7	□□□□□ -0.22
HMGA2-209	ENST00000539662	PCCA	P05165	728 aa	Predicted RBP	13.69	□□□□□ -0.22
HMGA2-209	ENST00000539662	CELF1	Q92879	486 aa	Known RBP	13.69	□□□□□ -0.22
HMGA2-209	ENST00000539662	DICER1	Q9UPY3	1922 aa	Known RBP	13.68	□□□□□ -0.22
HMGA2-209	ENST00000539662	PPEF1	O14829	653 aa	Predicted RBP	13.68	□□□□□ -0.22
HMGA2-209	ENST00000539662	CASP7	P55210	303 aa		13.68	□□□□□ -0.22
HMGA2-209	ENST00000539662	GCKR	Q14397	625 aa		13.68	□□□□□ -0.22
HMGA2-209	ENST00000539662	SF3B3	Q15393	1217 aa	Known RBP	13.68	□□□□□ -0.22
HMGA2-209	ENST00000539662	BEND3	Q5T5X7	828 aa		13.68	□□□□□ -0.22
HMGA2-209	ENST00000539662	SEC31B	Q9NQW1	1179 aa		13.68	□□□□□ -0.22
HMGA2-209	ENST00000539662	COL4A5	P29400	1685 aa		13.68	□□□□□ -0.22
HMGA2-209	ENST00000539662		H7C1W4	665 aa		13.67	□□□□□ -0.22
HMGA2-209	ENST00000539662	LMNB1	P20700	586 aa		13.67	□□□□□ -0.22
HMGA2-209	ENST00000539662	NEXN	Q0ZGT2	675 aa		13.67	□□□□□ -0.22
HMGA2-209	ENST00000539662	CCDC93	Q567U6	631 aa		13.67	□□□□□ -0.22
HMGA2-209	ENST00000539662	UBE3B	Q7Z3V4	1068 aa		13.67	□□□□□ -0.22
HMGA2-209	ENST00000539662	TAOK3	Q9H2K8	898 aa		13.67	□□□□□ -0.22
HMGA2-209	ENST00000539662	ZNF277	Q9NRM2	450 aa	Predicted RBP	13.67	□□□□□ -0.22
HMGA2-209	ENST00000539662	LINS1	Q8NG48	757 aa		13.66	□□□□□ -0.22
HMGA2-209	ENST00000539662	MYH3	P11055	1940 aa		13.66	□□□□□ -0.22

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