RNA–Protein interactions for RNA: ENST00000532737.1

USP48-214, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 680 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-214ENST00000532737 PPP1R42Q7Z4L9 355 aa31.67■■■□□ 2.66
USP48-214ENST00000532737 UTP14AQ9BVJ6 771 aaKnown RBP31.67■■■□□ 2.66
USP48-214ENST00000532737 IBTKQ9P2D0 1353 aaPredicted RBP31.67■■■□□ 2.66
USP48-214ENST00000532737 PXDNLA1KZ92 1463 aa31.66■■■□□ 2.66
USP48-214ENST00000532737 DPEP1P16444 411 aa31.66■■■□□ 2.66
USP48-214ENST00000532737 GTF2E1P29083 439 aaPredicted RBP31.66■■■□□ 2.66
USP48-214ENST00000532737 ERFEQ4G0M1 354 aa31.66■■■□□ 2.66
USP48-214ENST00000532737 F6X3S4 739 aa31.65■■■□□ 2.66
USP48-214ENST00000532737 CHRNA5P30532 468 aa31.65■■■□□ 2.66
USP48-214ENST00000532737 DNAAF4Q8WXU2 420 aa31.65■■■□□ 2.66
USP48-214ENST00000532737 ANKRD36CQ5JPF3 1778 aa31.65■■■□□ 2.66
USP48-214ENST00000532737 IGKV5-2P06315 115 aa31.63■■■□□ 2.65
USP48-214ENST00000532737 KCNA3P22001 575 aa31.63■■■□□ 2.65
USP48-214ENST00000532737 ABCC12Q96J65 1359 aa31.63■■■□□ 2.65
USP48-214ENST00000532737 SYNE4Q8N205 404 aa31.62■■■□□ 2.65
USP48-214ENST00000532737 TRMT112Q9UI30 125 aaKnown RBP31.62■■■□□ 2.65
USP48-214ENST00000532737 KIAA1551Q9HCM1 1747 aa31.61■■■□□ 2.65
USP48-214ENST00000532737 PDE6BP35913 854 aa31.61■■■□□ 2.65
USP48-214ENST00000532737 NEXNQ0ZGT2 675 aa31.61■■■□□ 2.65
USP48-214ENST00000532737 C2CD5Q86YS7 1000 aa31.61■■■□□ 2.65
USP48-214ENST00000532737 CCDC191Q8NCU4 936 aa31.61■■■□□ 2.65
USP48-214ENST00000532737 BRPF1P55201 1214 aaPredicted RBP31.6■■■□□ 2.65
USP48-214ENST00000532737 WWC3Q9ULE0 1092 aa31.6■■■□□ 2.65
USP48-214ENST00000532737 PTPRCP08575 1304 aa31.59■■■□□ 2.65
USP48-214ENST00000532737 RNF123Q5XPI4 1314 aa31.59■■■□□ 2.65
USP48-214ENST00000532737 CWF19L2Q2TBE0 894 aaKnown RBP31.59■■■□□ 2.65
USP48-214ENST00000532737 CWC25Q9NXE8 425 aaPredicted RBP31.59■■■□□ 2.65
USP48-214ENST00000532737 ANKRD31Q8N7Z5 1873 aa31.59■■■□□ 2.65
USP48-214ENST00000532737 NEURL1BA8MQ27 555 aa31.58■■■□□ 2.65
USP48-214ENST00000532737 SLC10A5Q5PT55 438 aa31.58■■■□□ 2.65
USP48-214ENST00000532737 FAM89AQ96GI7 184 aa31.58■■■□□ 2.65
USP48-214ENST00000532737 NOB1Q9ULX3 412 aaKnown RBP31.58■■■□□ 2.65
USP48-214ENST00000532737 SH3TC1Q8TE82 1336 aa31.57■■■□□ 2.64
USP48-214ENST00000532737 KLRG2A4D1S0 409 aaPredicted RBP31.57■■■□□ 2.64
USP48-214ENST00000532737 H0YIN7 160 aa31.57■■■□□ 2.64
USP48-214ENST00000532737 BCAR3O75815 825 aa31.57■■■□□ 2.64
USP48-214ENST00000532737 N4BP2Q86UW6 1770 aaPredicted RBP31.56■■■□□ 2.64
USP48-214ENST00000532737 BEND3Q5T5X7 828 aa31.56■■■□□ 2.64
USP48-214ENST00000532737 LINS1Q8NG48 757 aa31.56■■■□□ 2.64
USP48-214ENST00000532737 RTL5Q5HYW3 569 aaPredicted RBP31.55■■■□□ 2.64
USP48-214ENST00000532737 PDZRN3Q9UPQ7 1066 aa31.55■■■□□ 2.64
USP48-214ENST00000532737 SRGNP10124 158 aa31.54■■■□□ 2.64
USP48-214ENST00000532737 HCLS1P14317 486 aaPredicted RBP31.54■■■□□ 2.64
USP48-214ENST00000532737 C3orf67Q6ZVT6 689 aa31.54■■■□□ 2.64
USP48-214ENST00000532737 ZBTB38Q8NAP3 1195 aaPredicted RBP31.54■■■□□ 2.64
USP48-214ENST00000532737 JARID2Q92833 1246 aaPredicted RBP31.54■■■□□ 2.64
USP48-214ENST00000532737 PIM2Q9P1W9 311 aa31.54■■■□□ 2.64
USP48-214ENST00000532737 RIC1Q4ADV7 1423 aa31.53■■■□□ 2.64
USP48-214ENST00000532737 SLC4A10Q6U841 1118 aa31.53■■■□□ 2.64
USP48-214ENST00000532737 PCCAP05165 728 aaPredicted RBP31.52■■■□□ 2.64
USP48-214ENST00000532737 GCKRQ14397 625 aa31.51■■■□□ 2.63
USP48-214ENST00000532737 ZNF622Q969S3 477 aaKnown RBP eCLIP31.51■■■□□ 2.63
USP48-214ENST00000532737 TNRC6CQ9HCJ0 1690 aaKnown RBP31.51■■■□□ 2.63
USP48-214ENST00000532737 CRY2Q49AN0 593 aa31.5■■■□□ 2.63
USP48-214ENST00000532737 NLRP3Q96P20 1036 aa31.5■■■□□ 2.63
USP48-214ENST00000532737 BRCA1P38398 1863 aaKnown RBP31.5■■■□□ 2.63
USP48-214ENST00000532737 KIF16BQ96L93 1317 aa31.49■■■□□ 2.63
USP48-214ENST00000532737 IRS4O14654 1257 aaPredicted RBP31.49■■■□□ 2.63
USP48-214ENST00000532737 STYK1Q6J9G0 422 aa31.49■■■□□ 2.63
USP48-214ENST00000532737 MASTLQ96GX5 879 aa31.49■■■□□ 2.63
USP48-214ENST00000532737 BCS1LQ9Y276 419 aa31.49■■■□□ 2.63
USP48-214ENST00000532737 H7C1W4 665 aa31.48■■■□□ 2.63
USP48-214ENST00000532737 DALRD3Q5D0E6 543 aaKnown RBP31.48■■■□□ 2.63
USP48-214ENST00000532737 API5Q9BZZ5 524 aaKnown RBP31.48■■■□□ 2.63
USP48-214ENST00000532737 SRCIN1Q9C0H9 1055 aa31.48■■■□□ 2.63
USP48-214ENST00000532737 COL11A2P13942 1736 aaPredicted RBP31.48■■■□□ 2.63
USP48-214ENST00000532737 NPR1P16066 1061 aa31.47■■■□□ 2.63
USP48-214ENST00000532737 ARHGAP45Q92619 1136 aa31.47■■■□□ 2.63
USP48-214ENST00000532737 ALDH1L1O75891 902 aa31.46■■■□□ 2.63
USP48-214ENST00000532737 TTLL6Q8N841 843 aa31.46■■■□□ 2.63
USP48-214ENST00000532737 FRAT1Q92837 279 aaPredicted RBP31.46■■■□□ 2.63
USP48-214ENST00000532737 UBE3BQ7Z3V4 1068 aa31.45■■■□□ 2.63
USP48-214ENST00000532737 CASP7P55210 303 aa31.44■■■□□ 2.62
USP48-214ENST00000532737 CDHR2Q9BYE9 1310 aa31.44■■■□□ 2.62
USP48-214ENST00000532737 DLEC1Q9Y238 1755 aa31.43■■■□□ 2.62
USP48-214ENST00000532737 IPO8O15397 1037 aaKnown RBP31.43■■■□□ 2.62
USP48-214ENST00000532737 HOXA10P31260 410 aaPredicted RBP31.43■■■□□ 2.62
USP48-214ENST00000532737 RPGRQ92834 1020 aaKnown RBP31.43■■■□□ 2.62
USP48-214ENST00000532737 CNKSR1Q969H4 720 aa31.43■■■□□ 2.62
USP48-214ENST00000532737 RCAN3Q9UKA8 241 aa31.42■■■□□ 2.62
USP48-214ENST00000532737 TNNQ9UQP3 1299 aa31.42■■■□□ 2.62
USP48-214ENST00000532737 CEP350Q5VT06 3117 aa31.41■■■□□ 2.62
USP48-214ENST00000532737 SF3B3Q15393 1217 aaKnown RBP31.41■■■□□ 2.62
USP48-214ENST00000532737 ATF7IPQ6VMQ6 1270 aa31.41■■■□□ 2.62
USP48-214ENST00000532737 PDE8AO60658 829 aa31.4■■■□□ 2.62
USP48-214ENST00000532737 TRIM27P14373 513 aa31.4■■■□□ 2.62
USP48-214ENST00000532737 HSP90B1P14625 803 aaKnown RBP31.4■■■□□ 2.62
USP48-214ENST00000532737 DDX60Q8IY21 1712 aaKnown RBP31.4■■■□□ 2.62
USP48-214ENST00000532737 GRM8O00222 908 aa31.39■■■□□ 2.62
USP48-214ENST00000532737 ZKSCAN2Q63HK3 967 aa31.39■■■□□ 2.62
USP48-214ENST00000532737 PRPF40BQ6NWY9 871 aaKnown RBP31.39■■■□□ 2.62
USP48-214ENST00000532737 RBM17Q96I25 401 aaKnown RBP31.39■■■□□ 2.62
USP48-214ENST00000532737 GPBP1L1Q9HC44 474 aaPredicted RBP31.39■■■□□ 2.62
USP48-214ENST00000532737 ALDH1B1P30837 517 aa31.38■■■□□ 2.61
USP48-214ENST00000532737 CRAMP1Q96RY5 1269 aa31.38■■■□□ 2.61
USP48-214ENST00000532737 C9orf78Q9NZ63 289 aaPredicted RBP31.38■■■□□ 2.61
USP48-214ENST00000532737 ARFGEF1Q9Y6D6 1849 aa31.38■■■□□ 2.61
USP48-214ENST00000532737 CCT4P50991 539 aaKnown RBP31.37■■■□□ 2.61
USP48-214ENST00000532737 ABCC4O15439 1325 aa31.37■■■□□ 2.61
USP48-214ENST00000532737 ZNF219Q9P2Y4 722 aaPredicted RBP31.36■■■□□ 2.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms