RNA–Protein interactions for RNA: ENST00000527142.5

SYVN1-208, Transcript of synoviolin 1, human

TSL 5

Gene SYVN1, Length 796 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYVN1-208	ENST00000527142	SALL2	Q9Y467	1007 aa	Predicted RBP	13.86	□□□□□ -0.19
SYVN1-208	ENST00000527142	TNRC6C	Q9HCJ0	1690 aa	Known RBP	13.85	□□□□□ -0.19
SYVN1-208	ENST00000527142	DDX58	O95786	925 aa	Known RBP	13.85	□□□□□ -0.19
SYVN1-208	ENST00000527142	ERFE	Q4G0M1	354 aa		13.85	□□□□□ -0.19
SYVN1-208	ENST00000527142	NUTM1	Q86Y26	1132 aa		13.85	□□□□□ -0.19
SYVN1-208	ENST00000527142	ARFGEF2	Q9Y6D5	1785 aa		13.85	□□□□□ -0.19
SYVN1-208	ENST00000527142	TRIM28	Q13263	835 aa	Known RBP	13.84	□□□□□ -0.19
SYVN1-208	ENST00000527142	SH3TC1	Q8TE82	1336 aa		13.84	□□□□□ -0.19
SYVN1-208	ENST00000527142	ZC3H4	Q9UPT8	1303 aa	Known RBP	13.84	□□□□□ -0.19
SYVN1-208	ENST00000527142	HOXA10	P31260	410 aa	Predicted RBP	13.83	□□□□□ -0.2
SYVN1-208	ENST00000527142	SLC10A5	Q5PT55	438 aa		13.83	□□□□□ -0.2
SYVN1-208	ENST00000527142	DIEXF	Q68CQ4	756 aa	Known RBP	13.83	□□□□□ -0.2
SYVN1-208	ENST00000527142	ISCA1	Q9BUE6	129 aa		13.83	□□□□□ -0.2
SYVN1-208	ENST00000527142	LTBP3	Q9NS15	1303 aa		13.83	□□□□□ -0.2
SYVN1-208	ENST00000527142	NFKBIE	O00221	500 aa		13.82	□□□□□ -0.2
SYVN1-208	ENST00000527142	ALDH1B1	P30837	517 aa		13.82	□□□□□ -0.2
SYVN1-208	ENST00000527142	C9orf131	Q5VYM1	1079 aa		13.82	□□□□□ -0.2
SYVN1-208	ENST00000527142	RIC3	Q7Z5B4	369 aa		13.82	□□□□□ -0.2
SYVN1-208	ENST00000527142	RPGR	Q92834	1020 aa	Known RBP	13.82	□□□□□ -0.2
SYVN1-208	ENST00000527142	PHAX	Q9H814	394 aa	Known RBP	13.82	□□□□□ -0.2
SYVN1-208	ENST00000527142	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.82	□□□□□ -0.2
SYVN1-208	ENST00000527142	TRMT112	Q9UI30	125 aa	Known RBP	13.82	□□□□□ -0.2
SYVN1-208	ENST00000527142	C21orf2	O43822	256 aa		13.81	□□□□□ -0.2
SYVN1-208	ENST00000527142	LMNB1	P20700	586 aa		13.81	□□□□□ -0.2
SYVN1-208	ENST00000527142	EXOSC9	Q06265	439 aa	Known RBP	13.81	□□□□□ -0.2
SYVN1-208	ENST00000527142	C7orf43	Q8WVR3	580 aa		13.81	□□□□□ -0.2
SYVN1-208	ENST00000527142	NLRP3	Q96P20	1036 aa		13.81	□□□□□ -0.2
SYVN1-208	ENST00000527142		E9PSI1	815 aa		13.8	□□□□□ -0.2
SYVN1-208	ENST00000527142	VAMP4	O75379	141 aa		13.8	□□□□□ -0.2
SYVN1-208	ENST00000527142	CCDC93	Q567U6	631 aa		13.8	□□□□□ -0.2
SYVN1-208	ENST00000527142	RBM17	Q96I25	401 aa	Known RBP	13.8	□□□□□ -0.2
SYVN1-208	ENST00000527142	CRAMP1	Q96RY5	1269 aa		13.8	□□□□□ -0.2
SYVN1-208	ENST00000527142	TAOK3	Q9H2K8	898 aa		13.8	□□□□□ -0.2
SYVN1-208	ENST00000527142	RNF181	Q9P0P0	153 aa		13.8	□□□□□ -0.2
SYVN1-208	ENST00000527142	SLX4	Q8IY92	1834 aa		13.8	□□□□□ -0.2
SYVN1-208	ENST00000527142	ATP5J2-PTCD1	G3V325	749 aa		13.79	□□□□□ -0.2
SYVN1-208	ENST00000527142	SLC4A2	P04920	1241 aa		13.79	□□□□□ -0.2
SYVN1-208	ENST00000527142	HSP90B1	P14625	803 aa	Known RBP	13.79	□□□□□ -0.2
SYVN1-208	ENST00000527142	RASSF7	Q02833	373 aa		13.79	□□□□□ -0.2
SYVN1-208	ENST00000527142	CC2D2B	Q6DHV5	1058 aa		13.79	□□□□□ -0.2
SYVN1-208	ENST00000527142	KSR2	Q6VAB6	950 aa		13.79	□□□□□ -0.2
SYVN1-208	ENST00000527142	C3orf67	Q6ZVT6	689 aa		13.79	□□□□□ -0.2
SYVN1-208	ENST00000527142	CCDC191	Q8NCU4	936 aa		13.79	□□□□□ -0.2
SYVN1-208	ENST00000527142	METTL22	Q9BUU2	404 aa	Predicted RBP	13.79	□□□□□ -0.2
SYVN1-208	ENST00000527142	GPBP1L1	Q9HC44	474 aa	Predicted RBP	13.79	□□□□□ -0.2
SYVN1-208	ENST00000527142	HCLS1	P14317	486 aa	Predicted RBP	13.78	□□□□□ -0.2
SYVN1-208	ENST00000527142	FLII	Q13045	1269 aa		13.78	□□□□□ -0.2
SYVN1-208	ENST00000527142	GRIPAP1	Q4V328	841 aa		13.78	□□□□□ -0.2
SYVN1-208	ENST00000527142	RTKN2	Q8IZC4	609 aa		13.78	□□□□□ -0.2
SYVN1-208	ENST00000527142	ZNF219	Q9P2Y4	722 aa	Predicted RBP	13.78	□□□□□ -0.2
SYVN1-208	ENST00000527142	MAP3K2	Q9Y2U5	619 aa		13.78	□□□□□ -0.2
SYVN1-208	ENST00000527142	FER1L6	Q2WGJ9	1857 aa		13.78	□□□□□ -0.2
SYVN1-208	ENST00000527142	PI4KAP2	A4QPH2	592 aa		13.77	□□□□□ -0.21
SYVN1-208	ENST00000527142	NEXN	Q0ZGT2	675 aa		13.77	□□□□□ -0.21
SYVN1-208	ENST00000527142	PI4KAP1	Q8N8J0	262 aa		13.77	□□□□□ -0.21
SYVN1-208	ENST00000527142	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	13.77	□□□□□ -0.21
SYVN1-208	ENST00000527142	SNED1	Q8TER0	1413 aa		13.77	□□□□□ -0.21
SYVN1-208	ENST00000527142	MYD88	Q99836	296 aa		13.77	□□□□□ -0.21
SYVN1-208	ENST00000527142	CWC25	Q9NXE8	425 aa	Predicted RBP	13.77	□□□□□ -0.21
SYVN1-208	ENST00000527142	LAMB2	P55268	1798 aa		13.76	□□□□□ -0.21
SYVN1-208	ENST00000527142	TCERG1	O14776	1098 aa	Known RBP	13.76	□□□□□ -0.21
SYVN1-208	ENST00000527142	PPEF1	O14829	653 aa	Predicted RBP	13.76	□□□□□ -0.21
SYVN1-208	ENST00000527142	PCCA	P05165	728 aa	Predicted RBP	13.76	□□□□□ -0.21
SYVN1-208	ENST00000527142	MIER1	Q8N108	512 aa		13.76	□□□□□ -0.21
SYVN1-208	ENST00000527142	FAM89A	Q96GI7	184 aa		13.76	□□□□□ -0.21
SYVN1-208	ENST00000527142	ABCC4	O15439	1325 aa		13.75	□□□□□ -0.21
SYVN1-208	ENST00000527142	KDM2B	Q8NHM5	1336 aa		13.75	□□□□□ -0.21
SYVN1-208	ENST00000527142	CACNA1F	O60840	1977 aa		13.75	□□□□□ -0.21
SYVN1-208	ENST00000527142	IRS4	O14654	1257 aa	Predicted RBP	13.75	□□□□□ -0.21
SYVN1-208	ENST00000527142	PRELP	P51888	382 aa		13.75	□□□□□ -0.21
SYVN1-208	ENST00000527142	FKBP4	Q02790	459 aa	Known RBP eCLIP	13.75	□□□□□ -0.21
SYVN1-208	ENST00000527142	SLFN5	Q08AF3	891 aa		13.75	□□□□□ -0.21
SYVN1-208	ENST00000527142	FKBP5	Q13451	457 aa	Predicted RBP	13.75	□□□□□ -0.21
SYVN1-208	ENST00000527142	SF3B3	Q15393	1217 aa	Known RBP	13.75	□□□□□ -0.21
SYVN1-208	ENST00000527142	DDX46	Q7L014	1031 aa	Known RBP	13.75	□□□□□ -0.21
SYVN1-208	ENST00000527142	G2E3	Q7L622	706 aa		13.75	□□□□□ -0.21
SYVN1-208	ENST00000527142	TMC4	Q7Z404	712 aa		13.75	□□□□□ -0.21
SYVN1-208	ENST00000527142	SYNE4	Q8N205	404 aa		13.75	□□□□□ -0.21
SYVN1-208	ENST00000527142	ZNF428	Q96B54	188 aa		13.75	□□□□□ -0.21
SYVN1-208	ENST00000527142	PSMD1	Q99460	953 aa		13.75	□□□□□ -0.21
SYVN1-208	ENST00000527142	SBF1	O95248	1867 aa		13.75	□□□□□ -0.21
SYVN1-208	ENST00000527142	TIAM2	Q8IVF5	1701 aa		13.75	□□□□□ -0.21
SYVN1-208	ENST00000527142	DDX60	Q8IY21	1712 aa	Known RBP	13.75	□□□□□ -0.21
SYVN1-208	ENST00000527142	CACNA1S	Q13698	1873 aa		13.74	□□□□□ -0.21
SYVN1-208	ENST00000527142	CDHR2	Q9BYE9	1310 aa		13.74	□□□□□ -0.21
SYVN1-208	ENST00000527142	BBOX1	O75936	387 aa		13.74	□□□□□ -0.21
SYVN1-208	ENST00000527142	IGKV5-2	P06315	115 aa		13.74	□□□□□ -0.21
SYVN1-208	ENST00000527142	ZNF526	Q8TF50	670 aa	Predicted RBP	13.74	□□□□□ -0.21
SYVN1-208	ENST00000527142	DNAAF4	Q8WXU2	420 aa		13.74	□□□□□ -0.21
SYVN1-208	ENST00000527142	NEURL1B	A8MQ27	555 aa		13.73	□□□□□ -0.21
SYVN1-208	ENST00000527142	GRAP	Q13588	217 aa		13.73	□□□□□ -0.21
SYVN1-208	ENST00000527142	LINS1	Q8NG48	757 aa		13.73	□□□□□ -0.21
SYVN1-208	ENST00000527142	GRAPL	Q8TC17	118 aa	Predicted RBP	13.73	□□□□□ -0.21
SYVN1-208	ENST00000527142	TMX4	Q9H1E5	349 aa	Predicted RBP	13.73	□□□□□ -0.21
SYVN1-208	ENST00000527142	ATP6V0A2	Q9Y487	856 aa		13.73	□□□□□ -0.21
SYVN1-208	ENST00000527142	CT47B1	P0C2W7	299 aa	Predicted RBP	13.72	□□□□□ -0.21
SYVN1-208	ENST00000527142	OLFM4	Q6UX06	510 aa		13.72	□□□□□ -0.21
SYVN1-208	ENST00000527142	TRMT2A	Q8IZ69	625 aa	Known RBP	13.72	□□□□□ -0.21
SYVN1-208	ENST00000527142	GLTPD2	A6NH11	291 aa		13.71	□□□□□ -0.21
SYVN1-208	ENST00000527142	CCDC152	Q4G0S7	254 aa		13.71	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 49 ms