RNA–Protein interactions for RNA: ENST00000524165.5

PVT1-220, Transcript of Pvt1 oncogene, humanhuman

TSL 2

Gene PVT1, Length 458 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-220ENST00000524165 NIP7Q9Y221 180 aaKnown RBP eCLIP23.72■■□□□ 1.39
PVT1-220ENST00000524165 SAGE1Q9NXZ1 904 aa23.71■■□□□ 1.39
PVT1-220ENST00000524165 IL17REQ8NFR9 667 aa23.7■■□□□ 1.38
PVT1-220ENST00000524165 GLIS2Q9BZE0 524 aaPredicted RBP23.7■■□□□ 1.38
PVT1-220ENST00000524165 AKAP11Q9UKA4 1901 aa23.69■■□□□ 1.38
PVT1-220ENST00000524165 NIM1KQ8IY84 436 aa23.69■■□□□ 1.38
PVT1-220ENST00000524165 ZIC5Q96T25 663 aa23.69■■□□□ 1.38
PVT1-220ENST00000524165 ZC3H15Q8WU90 426 aaKnown RBP23.68■■□□□ 1.38
PVT1-220ENST00000524165 GNAT3A8MTJ3 354 aa23.67■■□□□ 1.38
PVT1-220ENST00000524165 GTF2E1P29083 439 aaPredicted RBP23.67■■□□□ 1.38
PVT1-220ENST00000524165 ZNF408Q9H9D4 720 aa23.67■■□□□ 1.38
PVT1-220ENST00000524165 USP16Q9Y5T5 823 aa23.67■■□□□ 1.38
PVT1-220ENST00000524165 FAM177BA6PVY3 158 aa23.66■■□□□ 1.38
PVT1-220ENST00000524165 PIP4K2AP48426 406 aaPredicted RBP23.66■■□□□ 1.38
PVT1-220ENST00000524165 CDC37L1Q7L3B6 337 aa23.66■■□□□ 1.38
PVT1-220ENST00000524165 VPS33BQ9H267 617 aa23.66■■□□□ 1.38
PVT1-220ENST00000524165 HOXA10P31260 410 aaPredicted RBP23.65■■□□□ 1.38
PVT1-220ENST00000524165 GCC1Q96CN9 775 aa23.65■■□□□ 1.38
PVT1-220ENST00000524165 CDHR2Q9BYE9 1310 aa23.64■■□□□ 1.38
PVT1-220ENST00000524165 HUNKP57058 714 aa23.64■■□□□ 1.37
PVT1-220ENST00000524165 NPC1L1Q9UHC9 1359 aa23.64■■□□□ 1.37
PVT1-220ENST00000524165 KIF7Q2M1P5 1343 aa23.63■■□□□ 1.37
PVT1-220ENST00000524165 GAS2L2Q8NHY3 880 aa23.63■■□□□ 1.37
PVT1-220ENST00000524165 CEMIPQ8WUJ3 1361 aa23.63■■□□□ 1.37
PVT1-220ENST00000524165 RIC1Q4ADV7 1423 aa23.62■■□□□ 1.37
PVT1-220ENST00000524165 BTBD11A6QL63 1104 aa23.62■■□□□ 1.37
PVT1-220ENST00000524165 FAM155AB1AL88 458 aaPredicted RBP23.62■■□□□ 1.37
PVT1-220ENST00000524165 PPIP5K2O43314 1243 aa23.62■■□□□ 1.37
PVT1-220ENST00000524165 KCNQ3O43525 872 aa23.62■■□□□ 1.37
PVT1-220ENST00000524165 RPGRQ92834 1020 aaKnown RBP23.62■■□□□ 1.37
PVT1-220ENST00000524165 NYXQ9GZU5 481 aa23.62■■□□□ 1.37
PVT1-220ENST00000524165 ABCC12Q96J65 1359 aa23.62■■□□□ 1.37
PVT1-220ENST00000524165 DIAPH1O60610 1272 aaKnown RBP23.61■■□□□ 1.37
PVT1-220ENST00000524165 GMPSP49915 693 aaPredicted RBP23.61■■□□□ 1.37
PVT1-220ENST00000524165 CXCL9Q07325 125 aa23.61■■□□□ 1.37
PVT1-220ENST00000524165 CTU1Q7Z7A3 348 aaKnown RBP23.61■■□□□ 1.37
PVT1-220ENST00000524165 NBPF15Q8N660 670 aa23.61■■□□□ 1.37
PVT1-220ENST00000524165 ZNRF3Q9ULT6 936 aa23.61■■□□□ 1.37
PVT1-220ENST00000524165 KNSTRNQ9Y448 316 aa23.61■■□□□ 1.37
PVT1-220ENST00000524165 HIRAP54198 1017 aaPredicted RBP23.6■■□□□ 1.37
PVT1-220ENST00000524165 RGMBQ6NW40 437 aa23.6■■□□□ 1.37
PVT1-220ENST00000524165 CCDC102AQ96A19 550 aa23.6■■□□□ 1.37
PVT1-220ENST00000524165 CRAMP1Q96RY5 1269 aa23.6■■□□□ 1.37
PVT1-220ENST00000524165 RNF186Q9NXI6 227 aa23.6■■□□□ 1.37
PVT1-220ENST00000524165 NUP98P52948 1817 aa23.59■■□□□ 1.37
PVT1-220ENST00000524165 PPEF1O14829 653 aaPredicted RBP23.59■■□□□ 1.37
PVT1-220ENST00000524165 SNRPA1P09661 255 aaKnown RBP23.59■■□□□ 1.37
PVT1-220ENST00000524165 HLFQ16534 295 aa23.59■■□□□ 1.37
PVT1-220ENST00000524165 AOC3Q16853 763 aa23.59■■□□□ 1.37
PVT1-220ENST00000524165 PRAMEF22A3QJZ6 481 aa23.58■■□□□ 1.37
PVT1-220ENST00000524165 NBPF26B4DH59 902 aa23.58■■□□□ 1.37
PVT1-220ENST00000524165 TRPA1O75762 1119 aa23.58■■□□□ 1.37
PVT1-220ENST00000524165 NBPF10Q6P3W6 841 aaKnown RBP23.58■■□□□ 1.37
PVT1-220ENST00000524165 KIF23Q02241 960 aaPredicted RBP23.57■■□□□ 1.36
PVT1-220ENST00000524165 NUTM1Q86Y26 1132 aa23.57■■□□□ 1.36
PVT1-220ENST00000524165 RBM17Q96I25 401 aaKnown RBP23.57■■□□□ 1.36
PVT1-220ENST00000524165 POLR2AP24928 1970 aaKnown RBP23.56■■□□□ 1.36
PVT1-220ENST00000524165 HPS5Q9UPZ3 1129 aa23.56■■□□□ 1.36
PVT1-220ENST00000524165 USP48Q86UV5 1035 aa23.55■■□□□ 1.36
PVT1-220ENST00000524165 SUPT20HQ8NEM7 779 aa23.55■■□□□ 1.36
PVT1-220ENST00000524165 TRPM4Q8TD43 1214 aa23.55■■□□□ 1.36
PVT1-220ENST00000524165 BCL2L13Q9BXK5 485 aa23.55■■□□□ 1.36
PVT1-220ENST00000524165 TMX4Q9H1E5 349 aaPredicted RBP23.55■■□□□ 1.36
PVT1-220ENST00000524165 IBTKQ9P2D0 1353 aaPredicted RBP23.54■■□□□ 1.36
PVT1-220ENST00000524165 TNIP1Q15025 636 aa23.54■■□□□ 1.36
PVT1-220ENST00000524165 PKN2Q16513 984 aaKnown RBP23.54■■□□□ 1.36
PVT1-220ENST00000524165 SLC51AQ86UW1 340 aa23.54■■□□□ 1.36
PVT1-220ENST00000524165 AMER1Q5JTC6 1135 aaPredicted RBP23.53■■□□□ 1.36
PVT1-220ENST00000524165 C2orf69Q8N8R5 385 aa23.53■■□□□ 1.36
PVT1-220ENST00000524165 RTFDC1Q9BY42 306 aaPredicted RBP23.53■■□□□ 1.36
PVT1-220ENST00000524165 GBA2Q9HCG7 927 aaPredicted RBP23.53■■□□□ 1.36
PVT1-220ENST00000524165 TCERG1O14776 1098 aaKnown RBP23.52■■□□□ 1.36
PVT1-220ENST00000524165 ZNF157P51786 506 aaPredicted RBP23.52■■□□□ 1.36
PVT1-220ENST00000524165 CNOT7Q9UIV1 285 aaKnown RBP23.52■■□□□ 1.36
PVT1-220ENST00000524165 ATP6V0A2Q9Y487 856 aa23.52■■□□□ 1.36
PVT1-220ENST00000524165 ERVV-1B6SEH8 477 aa23.51■■□□□ 1.35
PVT1-220ENST00000524165 H7C1D1 291 aa23.51■■□□□ 1.35
PVT1-220ENST00000524165 HABP4Q5JVS0 413 aaKnown RBP23.51■■□□□ 1.35
PVT1-220ENST00000524165 REM2Q8IYK8 340 aaPredicted RBP23.51■■□□□ 1.35
PVT1-220ENST00000524165 CSRNP1Q96S65 589 aa23.5■■□□□ 1.35
PVT1-220ENST00000524165 LAMB4A4D0S4 1761 aa23.5■■□□□ 1.35
PVT1-220ENST00000524165 SLC10A3P09131 477 aa23.49■■□□□ 1.35
PVT1-220ENST00000524165 RAD17O75943 681 aa23.48■■□□□ 1.35
PVT1-220ENST00000524165 KIAA2012Q0VF49 1180 aa23.48■■□□□ 1.35
PVT1-220ENST00000524165 DLK2Q6UY11 383 aa23.48■■□□□ 1.35
PVT1-220ENST00000524165 KRT26Q7Z3Y9 468 aa23.48■■□□□ 1.35
PVT1-220ENST00000524165 TIMELESSQ9UNS1 1208 aa23.47■■□□□ 1.35
PVT1-220ENST00000524165 COL3A1P02461 1466 aaPredicted RBP23.47■■□□□ 1.35
PVT1-220ENST00000524165 MAP3K15Q6ZN16 1313 aa23.46■■□□□ 1.35
PVT1-220ENST00000524165 MICALL2Q8IY33 904 aa23.46■■□□□ 1.35
PVT1-220ENST00000524165 UBN2Q6ZU65 1347 aa23.45■■□□□ 1.34
PVT1-220ENST00000524165 SHTN1A0MZ66 631 aa23.45■■□□□ 1.34
PVT1-220ENST00000524165 U2SURPO15042 1029 aaKnown RBP23.45■■□□□ 1.34
PVT1-220ENST00000524165 SUSD4Q5VX71 490 aa23.45■■□□□ 1.34
PVT1-220ENST00000524165 DPP8Q6V1X1 898 aaPredicted RBP23.45■■□□□ 1.34
PVT1-220ENST00000524165 DPF2Q92785 391 aa23.45■■□□□ 1.34
PVT1-220ENST00000524165 EIF4G2P78344 907 aaKnown RBP eCLIP23.44■■□□□ 1.342e-7■■■■■ 34.2
PVT1-220ENST00000524165 C3orf67Q6ZVT6 689 aa23.44■■□□□ 1.34
PVT1-220ENST00000524165 MPNDQ8N594 471 aa23.43■■□□□ 1.34
PVT1-220ENST00000524165 NLRP3Q96P20 1036 aa23.43■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms