RNA–Protein interactions for RNA: ENST00000523541.1

CCNC-213, Transcript of cyclin C, humanhuman

TSL 1 (best)

Gene CCNC, Length 1,123 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNC-213ENST00000523541 ERFEQ4G0M1 354 aa22.31■■□□□ 1.16
CCNC-213ENST00000523541 UTP14AQ9BVJ6 771 aaKnown RBP22.31■■□□□ 1.16
CCNC-213ENST00000523541 TAOK3Q9H2K8 898 aa22.31■■□□□ 1.16
CCNC-213ENST00000523541 HOXA10P31260 410 aaPredicted RBP22.3■■□□□ 1.16
CCNC-213ENST00000523541 WDR63Q8IWG1 891 aa22.3■■□□□ 1.16
CCNC-213ENST00000523541 C7orf43Q8WVR3 580 aa22.3■■□□□ 1.16
CCNC-213ENST00000523541 TOMM70O94826 608 aa22.29■■□□□ 1.16
CCNC-213ENST00000523541 GRIPAP1Q4V328 841 aa22.29■■□□□ 1.16
CCNC-213ENST00000523541 CCDC30Q5VVM6 783 aa22.29■■□□□ 1.16
CCNC-213ENST00000523541 RPGRQ92834 1020 aaKnown RBP22.29■■□□□ 1.16
CCNC-213ENST00000523541 NLRP3Q96P20 1036 aa22.29■■□□□ 1.16
CCNC-213ENST00000523541 RRAGCQ9HB90 399 aa22.29■■□□□ 1.16
CCNC-213ENST00000523541 CCDC93Q567U6 631 aa22.28■■□□□ 1.16
CCNC-213ENST00000523541 CC2D2BQ6DHV5 1058 aa22.28■■□□□ 1.16
CCNC-213ENST00000523541 NLRP10Q86W26 655 aa22.28■■□□□ 1.16
CCNC-213ENST00000523541 RTKN2Q8IZC4 609 aa22.28■■□□□ 1.16
CCNC-213ENST00000523541 C8orf58Q8NAV2 365 aa22.28■■□□□ 1.16
CCNC-213ENST00000523541 SLX4Q8IY92 1834 aa22.28■■□□□ 1.16
CCNC-213ENST00000523541 TRIM28Q13263 835 aaKnown RBP22.27■■□□□ 1.16
CCNC-213ENST00000523541 CCDC88AQ3V6T2 1871 aa22.27■■□□□ 1.16
CCNC-213ENST00000523541 TIAM2Q8IVF5 1701 aa22.27■■□□□ 1.16
CCNC-213ENST00000523541 CRAMP1Q96RY5 1269 aa22.27■■□□□ 1.16
CCNC-213ENST00000523541 ABCC12Q96J65 1359 aa22.26■■□□□ 1.15
CCNC-213ENST00000523541 HSPA6P17066 643 aa22.26■■□□□ 1.15
CCNC-213ENST00000523541 PRELPP51888 382 aa22.26■■□□□ 1.15
CCNC-213ENST00000523541 DPY19L2Q6NUT2 758 aa22.26■■□□□ 1.15
CCNC-213ENST00000523541 RBM17Q96I25 401 aaKnown RBP22.26■■□□□ 1.15
CCNC-213ENST00000523541 ARFGEF2Q9Y6D5 1785 aa22.25■■□□□ 1.15
CCNC-213ENST00000523541 ELL2O00472 640 aaPredicted RBP22.25■■□□□ 1.15
CCNC-213ENST00000523541 GLTPD2A6NH11 291 aa22.24■■□□□ 1.15
CCNC-213ENST00000523541 GOLGA2Q08379 1002 aa22.24■■□□□ 1.15
CCNC-213ENST00000523541 ISCA1Q9BUE6 129 aa22.24■■□□□ 1.15
CCNC-213ENST00000523541 TRMT112Q9UI30 125 aaKnown RBP22.24■■□□□ 1.15
CCNC-213ENST00000523541 FER1L6Q2WGJ9 1857 aa22.24■■□□□ 1.15
CCNC-213ENST00000523541 TNRC6CQ9HCJ0 1690 aaKnown RBP22.23■■□□□ 1.15
CCNC-213ENST00000523541 DDX58O95786 925 aaKnown RBP22.23■■□□□ 1.15
CCNC-213ENST00000523541 FAM9BQ8IZU0 186 aa22.23■■□□□ 1.15
CCNC-213ENST00000523541 SH3TC1Q8TE82 1336 aa22.23■■□□□ 1.15
CCNC-213ENST00000523541 RIC3Q7Z5B4 369 aa22.22■■□□□ 1.15
CCNC-213ENST00000523541 HSP90B1P14625 803 aaKnown RBP22.21■■□□□ 1.15
CCNC-213ENST00000523541 FKBP4Q02790 459 aaKnown RBP eCLIP22.21■■□□□ 1.15
CCNC-213ENST00000523541 RBM46Q8TBY0 533 aaKnown RBP22.21■■□□□ 1.15
CCNC-213ENST00000523541 TSR2Q969E8 191 aaKnown RBP22.21■■□□□ 1.15
CCNC-213ENST00000523541 STK31Q9BXU1 1019 aa22.21■■□□□ 1.15
CCNC-213ENST00000523541 TMX4Q9H1E5 349 aaPredicted RBP22.21■■□□□ 1.15
CCNC-213ENST00000523541 TCERG1O14776 1098 aaKnown RBP22.2■■□□□ 1.14
CCNC-213ENST00000523541 VEGFAP15692 232 aaPredicted RBP22.2■■□□□ 1.14
CCNC-213ENST00000523541 TWISTNBQ3B726 338 aaPredicted RBP22.2■■□□□ 1.14
CCNC-213ENST00000523541 OLFM4Q6UX06 510 aa22.2■■□□□ 1.14
CCNC-213ENST00000523541 TSPYL6Q8N831 410 aa22.2■■□□□ 1.14
CCNC-213ENST00000523541 BBOX1O75936 387 aa22.19■■□□□ 1.14
CCNC-213ENST00000523541 ZNF428Q96B54 188 aa22.19■■□□□ 1.14
CCNC-213ENST00000523541 PSMD1Q99460 953 aa22.19■■□□□ 1.14
CCNC-213ENST00000523541 PHAXQ9H814 394 aaKnown RBP22.19■■□□□ 1.14
CCNC-213ENST00000523541 ZNF277Q9NRM2 450 aaPredicted RBP22.19■■□□□ 1.14
CCNC-213ENST00000523541 ANKRD36CQ5JPF3 1778 aa22.17■■□□□ 1.14
CCNC-213ENST00000523541 CCDC191Q8NCU4 936 aa22.17■■□□□ 1.14
CCNC-213ENST00000523541 MYH16Q9H6N6 1097 aa22.17■■□□□ 1.14
CCNC-213ENST00000523541 DICER1Q9UPY3 1922 aaKnown RBP22.16■■□□□ 1.14
CCNC-213ENST00000523541 PPEF1O14829 653 aaPredicted RBP22.16■■□□□ 1.14
CCNC-213ENST00000523541 APLP1P51693 650 aa22.16■■□□□ 1.14
CCNC-213ENST00000523541 TMC4Q7Z404 712 aa22.16■■□□□ 1.14
CCNC-213ENST00000523541 VPS33BQ9H267 617 aa22.16■■□□□ 1.14
CCNC-213ENST00000523541 FANCIQ9NVI1 1328 aa22.15■■□□□ 1.14
CCNC-213ENST00000523541 ATP5J2-PTCD1G3V325 749 aa22.15■■□□□ 1.14
CCNC-213ENST00000523541 HCLS1P14317 486 aaPredicted RBP22.15■■□□□ 1.14
CCNC-213ENST00000523541 FSTL1Q12841 308 aa22.15■■□□□ 1.14
CCNC-213ENST00000523541 SF3B3Q15393 1217 aaKnown RBP22.15■■□□□ 1.14
CCNC-213ENST00000523541 KSR2Q6VAB6 950 aa22.15■■□□□ 1.14
CCNC-213ENST00000523541 C3orf67Q6ZVT6 689 aa22.15■■□□□ 1.14
CCNC-213ENST00000523541 DDX46Q7L014 1031 aaKnown RBP22.15■■□□□ 1.14
CCNC-213ENST00000523541 SYNE4Q8N205 404 aa22.15■■□□□ 1.14
CCNC-213ENST00000523541 SMC1BQ8NDV3 1235 aa22.15■■□□□ 1.14
CCNC-213ENST00000523541 METTL22Q9BUU2 404 aaPredicted RBP22.15■■□□□ 1.14
CCNC-213ENST00000523541 SALL2Q9Y467 1007 aaPredicted RBP22.15■■□□□ 1.14
CCNC-213ENST00000523541 IARSP41252 1262 aaKnown RBP22.14■■□□□ 1.13
CCNC-213ENST00000523541 ZBTB38Q8NAP3 1195 aaPredicted RBP22.14■■□□□ 1.13
CCNC-213ENST00000523541 ATP6V0A2Q9Y487 856 aa22.14■■□□□ 1.13
CCNC-213ENST00000523541 CCER2I3L3R5 266 aa22.13■■□□□ 1.13
CCNC-213ENST00000523541 DDNO94850 711 aaPredicted RBP22.13■■□□□ 1.13
CCNC-213ENST00000523541 SLC4A2P04920 1241 aa22.13■■□□□ 1.13
CCNC-213ENST00000523541 SP8Q8IXZ3 490 aa22.13■■□□□ 1.13
CCNC-213ENST00000523541 FAM89AQ96GI7 184 aa22.13■■□□□ 1.13
CCNC-213ENST00000523541 VAMP4O75379 141 aa22.12■■□□□ 1.13
CCNC-213ENST00000523541 JDP2Q8WYK2 163 aa22.12■■□□□ 1.13
CCNC-213ENST00000523541 ABCC4O15439 1325 aa22.11■■□□□ 1.13
CCNC-213ENST00000523541 PCCAP05165 728 aaPredicted RBP22.11■■□□□ 1.13
CCNC-213ENST00000523541 NEXNQ0ZGT2 675 aa22.11■■□□□ 1.13
CCNC-213ENST00000523541 GRAPQ13588 217 aa22.11■■□□□ 1.13
CCNC-213ENST00000523541 GRAPLQ8TC17 118 aaPredicted RBP22.11■■□□□ 1.13
CCNC-213ENST00000523541 MYD88Q99836 296 aa22.11■■□□□ 1.13
CCNC-213ENST00000523541 CWC25Q9NXE8 425 aaPredicted RBP22.11■■□□□ 1.13
CCNC-213ENST00000523541 SNED1Q8TER0 1413 aa22.11■■□□□ 1.13
CCNC-213ENST00000523541 PI4KAP2A4QPH2 592 aa22.1■■□□□ 1.13
CCNC-213ENST00000523541 IRS4O14654 1257 aaPredicted RBP22.1■■□□□ 1.13
CCNC-213ENST00000523541 RTL5Q5HYW3 569 aaPredicted RBP22.1■■□□□ 1.13
CCNC-213ENST00000523541 PI4KAP1Q8N8J0 262 aa22.1■■□□□ 1.13
CCNC-213ENST00000523541 SUPT20HQ8NEM7 779 aa22.1■■□□□ 1.13
CCNC-213ENST00000523541 MAP3K2Q9Y2U5 619 aa22.1■■□□□ 1.13
CCNC-213ENST00000523541 CEP350Q5VT06 3117 aa22.1■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms