RNA–Protein interactions for RNA: ENST00000522552.5

SKP1-209, Transcript of S-phase kinase associated protein 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SKP1, Length 1,683 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-209ENST00000522552 USP4Q13107 963 aa5.35□□□□□ -1.55
SKP1-209ENST00000522552 NBPF14Q5TI25 921 aa5.35□□□□□ -1.55
SKP1-209ENST00000522552 ANKS3Q6ZW76 656 aa5.35□□□□□ -1.55
SKP1-209ENST00000522552 DZIP3Q86Y13 1208 aaKnown RBP5.35□□□□□ -1.55
SKP1-209ENST00000522552 ARMC2Q8NEN0 867 aa5.35□□□□□ -1.55
SKP1-209ENST00000522552 TRIM55Q9BYV6 548 aa5.35□□□□□ -1.55
SKP1-209ENST00000522552 ZNF358Q9NW07 568 aa5.35□□□□□ -1.55
SKP1-209ENST00000522552 PNMA2Q9UL42 364 aa5.35□□□□□ -1.55
SKP1-209ENST00000522552 USP31Q70CQ4 1352 aa5.35□□□□□ -1.55
SKP1-209ENST00000522552 ETFBP38117 255 aa5.34□□□□□ -1.55
SKP1-209ENST00000522552 NFX1Q12986 1120 aaKnown RBP5.34□□□□□ -1.55
SKP1-209ENST00000522552 RAB33AQ14088 237 aa5.34□□□□□ -1.55
SKP1-209ENST00000522552 MAP9Q49MG5 647 aa5.34□□□□□ -1.55
SKP1-209ENST00000522552 ARSHQ5FYA8 562 aa5.34□□□□□ -1.55
SKP1-209ENST00000522552 KIAA0907Q7Z7F0 614 aaPredicted RBP5.34□□□□□ -1.55
SKP1-209ENST00000522552 C11orf96Q7Z7L8 435 aa5.34□□□□□ -1.55
SKP1-209ENST00000522552 ZBTB33Q86T24 672 aa5.34□□□□□ -1.55
SKP1-209ENST00000522552 ATCAYQ86WG3 371 aa5.34□□□□□ -1.55
SKP1-209ENST00000522552 GJD3Q8N144 294 aa5.34□□□□□ -1.55
SKP1-209ENST00000522552 TMTC2Q8N394 836 aa5.34□□□□□ -1.55
SKP1-209ENST00000522552 APPBP2Q92624 585 aa5.34□□□□□ -1.55
SKP1-209ENST00000522552 SEC16BQ96JE7 1060 aa5.34□□□□□ -1.55
SKP1-209ENST00000522552 SPG7Q9UQ90 795 aa5.34□□□□□ -1.55
SKP1-209ENST00000522552 EID1Q9Y6B2 187 aa5.34□□□□□ -1.55
SKP1-209ENST00000522552 ESYT3A0FGR9 886 aa5.34□□□□□ -1.56
SKP1-209ENST00000522552 KLF4O43474 513 aa5.34□□□□□ -1.56
SKP1-209ENST00000522552 UBE4AQ14139 1066 aa5.34□□□□□ -1.56
SKP1-209ENST00000522552 SUZ12Q15022 739 aaKnown RBP5.34□□□□□ -1.56
SKP1-209ENST00000522552 COX20Q5RI15 118 aa5.34□□□□□ -1.56
SKP1-209ENST00000522552 MEI1Q5TIA1 1274 aa5.34□□□□□ -1.56
SKP1-209ENST00000522552 RAVER1Q8IY67 606 aaKnown RBP5.34□□□□□ -1.56
SKP1-209ENST00000522552 TSR2Q969E8 191 aaKnown RBP5.34□□□□□ -1.56
SKP1-209ENST00000522552 CSRNP1Q96S65 589 aa5.34□□□□□ -1.56
SKP1-209ENST00000522552 PLCD4Q9BRC7 762 aa5.34□□□□□ -1.56
SKP1-209ENST00000522552 COPRSQ9NQ92 184 aa5.34□□□□□ -1.56
SKP1-209ENST00000522552 PRDM10Q9NQV6 1147 aa5.34□□□□□ -1.56
SKP1-209ENST00000522552 POLIQ9UNA4 740 aa5.34□□□□□ -1.56
SKP1-209ENST00000522552 FCF1Q9Y324 198 aaKnown RBP5.34□□□□□ -1.56
SKP1-209ENST00000522552 SALL2Q9Y467 1007 aaPredicted RBP5.34□□□□□ -1.56
SKP1-209ENST00000522552 MRVI1Q9Y6F6 885 aa5.34□□□□□ -1.56
SKP1-209ENST00000522552 ATAD2Q6PL18 1390 aa5.33□□□□□ -1.56
SKP1-209ENST00000522552 ZBTB39O15060 712 aa5.33□□□□□ -1.56
SKP1-209ENST00000522552 HCLS1P14317 486 aaPredicted RBP5.33□□□□□ -1.56
SKP1-209ENST00000522552 JUNDP17535 347 aa5.33□□□□□ -1.56
SKP1-209ENST00000522552 MASP1P48740 699 aa5.33□□□□□ -1.56
SKP1-209ENST00000522552 EVA1CP58658 441 aa5.33□□□□□ -1.56
SKP1-209ENST00000522552 ORC1Q13415 861 aa5.33□□□□□ -1.56
SKP1-209ENST00000522552 PLA2G2CQ5R387 149 aa5.33□□□□□ -1.56
SKP1-209ENST00000522552 CEP89Q96ST8 783 aa5.33□□□□□ -1.56
SKP1-209ENST00000522552 HOMER2Q9NSB8 354 aa5.33□□□□□ -1.56
SKP1-209ENST00000522552 GNL3LQ9NVN8 582 aaKnown RBP5.33□□□□□ -1.56
SKP1-209ENST00000522552 CCDC85CA6NKD9 419 aa5.32□□□□□ -1.56
SKP1-209ENST00000522552 NASPP49321 788 aaPredicted RBP5.32□□□□□ -1.56
SKP1-209ENST00000522552 FOXD4Q12950 439 aaPredicted RBP5.32□□□□□ -1.56
SKP1-209ENST00000522552 CCSAPQ6IQ19 270 aaPredicted RBP5.32□□□□□ -1.56
SKP1-209ENST00000522552 ERMP1Q7Z2K6 904 aa5.32□□□□□ -1.56
SKP1-209ENST00000522552 PGBD3Q8N328 593 aa5.32□□□□□ -1.56
SKP1-209ENST00000522552 LILRB2Q8N423 598 aa5.32□□□□□ -1.56
SKP1-209ENST00000522552 CCDC24Q8N4L8 307 aa5.32□□□□□ -1.56
SKP1-209ENST00000522552 CHMP7Q8WUX9 453 aaPredicted RBP5.32□□□□□ -1.56
SKP1-209ENST00000522552 HNRNPLLQ8WVV9 542 aaKnown RBP5.32□□□□□ -1.56
SKP1-209ENST00000522552 TCEAL9Q9UHQ7 104 aa5.32□□□□□ -1.56
SKP1-209ENST00000522552 PCDHB11Q9Y5F2 797 aa5.32□□□□□ -1.56
SKP1-209ENST00000522552 TMEM229AB2RXF0 380 aa5.31□□□□□ -1.56
SKP1-209ENST00000522552 OPLAHO14841 1288 aa5.31□□□□□ -1.56
SKP1-209ENST00000522552 VIL1P09327 827 aaKnown RBP5.31□□□□□ -1.56
SKP1-209ENST00000522552 CCNYL3P0C7X3 344 aa5.31□□□□□ -1.56
SKP1-209ENST00000522552 TAF1CQ15572 869 aaPredicted RBP5.31□□□□□ -1.56
SKP1-209ENST00000522552 NBPF20Q3BBV1 942 aa5.31□□□□□ -1.56
SKP1-209ENST00000522552 MSS51Q4VC12 460 aa5.31□□□□□ -1.56
SKP1-209ENST00000522552 FAM26DQ5JW98 314 aa5.31□□□□□ -1.56
SKP1-209ENST00000522552 CLEC4GQ6UXB4 293 aa5.31□□□□□ -1.56
SKP1-209ENST00000522552 SH3BP5LQ7L8J4 393 aa5.31□□□□□ -1.56
SKP1-209ENST00000522552 LRP10Q7Z4F1 713 aa5.31□□□□□ -1.56
SKP1-209ENST00000522552 HOMER1Q86YM7 354 aa5.31□□□□□ -1.56
SKP1-209ENST00000522552 TNS4Q8IZW8 715 aa5.31□□□□□ -1.56
SKP1-209ENST00000522552 ANKLE1Q8NAG6 615 aa5.31□□□□□ -1.56
SKP1-209ENST00000522552 PNISRQ8TF01 805 aaKnown RBP5.31□□□□□ -1.56
SKP1-209ENST00000522552 RELTQ969Z4 430 aa5.31□□□□□ -1.56
SKP1-209ENST00000522552 ZNF775Q96BV0 537 aaPredicted RBP5.31□□□□□ -1.56
SKP1-209ENST00000522552 TSPAN10Q9H1Z9 355 aaPredicted RBP5.31□□□□□ -1.56
SKP1-209ENST00000522552 EVA1BQ9NVM1 165 aa5.31□□□□□ -1.56
SKP1-209ENST00000522552 CNTN3Q9P232 1028 aa5.31□□□□□ -1.56
SKP1-209ENST00000522552 A0A1W2PRU2 124 aa5.31□□□□□ -1.56
SKP1-209ENST00000522552 EIF1AYO14602 144 aaKnown RBP5.31□□□□□ -1.56
SKP1-209ENST00000522552 GNALP38405 381 aa5.31□□□□□ -1.56
SKP1-209ENST00000522552 WDR75Q8IWA0 830 aaKnown RBP5.31□□□□□ -1.56
SKP1-209ENST00000522552 ABTB2Q8N961 1025 aa5.31□□□□□ -1.56
SKP1-209ENST00000522552 TRPM4Q8TD43 1214 aa5.31□□□□□ -1.56
SKP1-209ENST00000522552 EMID1Q96A84 441 aaPredicted RBP5.31□□□□□ -1.56
SKP1-209ENST00000522552 CARD14Q9BXL6 1004 aa5.31□□□□□ -1.56
SKP1-209ENST00000522552 UTP3Q9NQZ2 479 aaKnown RBP eCLIP5.31□□□□□ -1.564e-6■■■■■ 33.3
SKP1-209ENST00000522552 BSDC1Q9NW68 430 aaPredicted RBP5.31□□□□□ -1.56
SKP1-209ENST00000522552 COMMD10Q9Y6G5 202 aa5.31□□□□□ -1.56
SKP1-209ENST00000522552 CCDC189A1A4V9 331 aa5.3□□□□□ -1.56
SKP1-209ENST00000522552 WDHD1O75717 1129 aaPredicted RBP5.3□□□□□ -1.56
SKP1-209ENST00000522552 USP5P45974 858 aa5.3□□□□□ -1.56
SKP1-209ENST00000522552 ST13P50502 369 aaKnown RBP5.3□□□□□ -1.56
SKP1-209ENST00000522552 EXOSC10Q01780 885 aaKnown RBP5.3□□□□□ -1.56
SKP1-209ENST00000522552 LAPTM4AQ15012 233 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms