RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 HYPKQ9NX55 129 aa12.13□□□□□ -0.47
HDAC3-215ENST00000519474 SLX4Q8IY92 1834 aa12.13□□□□□ -0.47
HDAC3-215ENST00000519474 HOXA10P31260 410 aaPredicted RBP12.12□□□□□ -0.47
HDAC3-215ENST00000519474 HSP90AB3PQ58FF7 597 aa12.12□□□□□ -0.47
HDAC3-215ENST00000519474 OLFM4Q6UX06 510 aa12.12□□□□□ -0.47
HDAC3-215ENST00000519474 C3orf67Q6ZVT6 689 aa12.12□□□□□ -0.47
HDAC3-215ENST00000519474 DLEC1Q9Y238 1755 aa12.11□□□□□ -0.47
HDAC3-215ENST00000519474 ABCC12Q96J65 1359 aa12.11□□□□□ -0.47
HDAC3-215ENST00000519474 GLTPD2A6NH11 291 aa12.11□□□□□ -0.47
HDAC3-215ENST00000519474 TSR2Q969E8 191 aaKnown RBP12.11□□□□□ -0.47
HDAC3-215ENST00000519474 NLRP3Q96P20 1036 aa12.11□□□□□ -0.47
HDAC3-215ENST00000519474 ISCA1Q9BUE6 129 aa12.11□□□□□ -0.47
HDAC3-215ENST00000519474 SALL2Q9Y467 1007 aaPredicted RBP12.11□□□□□ -0.47
HDAC3-215ENST00000519474 LTBP3Q9NS15 1303 aa12.11□□□□□ -0.47
HDAC3-215ENST00000519474 TRIM28Q13263 835 aaKnown RBP12.1□□□□□ -0.47
HDAC3-215ENST00000519474 SOGA3Q5TF21 947 aa12.1□□□□□ -0.47
HDAC3-215ENST00000519474 FAM9BQ8IZU0 186 aa12.1□□□□□ -0.47
HDAC3-215ENST00000519474 ZNF428Q96B54 188 aa12.1□□□□□ -0.47
HDAC3-215ENST00000519474 CRAMP1Q96RY5 1269 aa12.1□□□□□ -0.47
HDAC3-215ENST00000519474 IBTKQ9P2D0 1353 aaPredicted RBP12.09□□□□□ -0.47
HDAC3-215ENST00000519474 POTECB2RU33 542 aa12.09□□□□□ -0.47
HDAC3-215ENST00000519474 ATP5J2-PTCD1G3V325 749 aa12.09□□□□□ -0.47
HDAC3-215ENST00000519474 TOMM70O94826 608 aa12.09□□□□□ -0.47
HDAC3-215ENST00000519474 HCLS1P14317 486 aaPredicted RBP12.09□□□□□ -0.47
HDAC3-215ENST00000519474 CCDC30Q5VVM6 783 aa12.09□□□□□ -0.47
HDAC3-215ENST00000519474 WDR63Q8IWG1 891 aa12.09□□□□□ -0.47
HDAC3-215ENST00000519474 RBM17Q96I25 401 aaKnown RBP12.09□□□□□ -0.47
HDAC3-215ENST00000519474 TAOK3Q9H2K8 898 aa12.09□□□□□ -0.47
HDAC3-215ENST00000519474 TRMT112Q9UI30 125 aaKnown RBP12.09□□□□□ -0.47
HDAC3-215ENST00000519474 IL16Q14005 1332 aa12.09□□□□□ -0.47
HDAC3-215ENST00000519474 KDM2BQ8NHM5 1336 aa12.09□□□□□ -0.47
HDAC3-215ENST00000519474 FKBP4Q02790 459 aaKnown RBP eCLIP12.08□□□□□ -0.48
HDAC3-215ENST00000519474 CCDC93Q567U6 631 aa12.08□□□□□ -0.48
HDAC3-215ENST00000519474 DPY19L2Q6NUT2 758 aa12.08□□□□□ -0.48
HDAC3-215ENST00000519474 RIC3Q7Z5B4 369 aa12.08□□□□□ -0.48
HDAC3-215ENST00000519474 RTKN2Q8IZC4 609 aa12.08□□□□□ -0.48
HDAC3-215ENST00000519474 RPGRQ92834 1020 aaKnown RBP12.08□□□□□ -0.48
HDAC3-215ENST00000519474 COL11A2P13942 1736 aaPredicted RBP12.08□□□□□ -0.48
HDAC3-215ENST00000519474 CCDC88AQ3V6T2 1871 aa12.08□□□□□ -0.48
HDAC3-215ENST00000519474 ZC3H4Q9UPT8 1303 aaKnown RBP12.08□□□□□ -0.48
HDAC3-215ENST00000519474 TCERG1O14776 1098 aaKnown RBP12.07□□□□□ -0.48
HDAC3-215ENST00000519474 FER1L6Q2WGJ9 1857 aa12.07□□□□□ -0.48
HDAC3-215ENST00000519474 SLC51AQ86UW1 340 aa12.07□□□□□ -0.48
HDAC3-215ENST00000519474 FAM89AQ96GI7 184 aa12.07□□□□□ -0.48
HDAC3-215ENST00000519474 CHMP4AQ9BY43 222 aa12.07□□□□□ -0.48
HDAC3-215ENST00000519474 BCL11AQ9H165 835 aa12.07□□□□□ -0.48
HDAC3-215ENST00000519474 SPINK5Q9NQ38 1064 aaPredicted RBP12.07□□□□□ -0.48
HDAC3-215ENST00000519474 ZNF277Q9NRM2 450 aaPredicted RBP12.07□□□□□ -0.48
HDAC3-215ENST00000519474 RIC1Q4ADV7 1423 aa12.06□□□□□ -0.48
HDAC3-215ENST00000519474 VAMP4O75379 141 aa12.06□□□□□ -0.48
HDAC3-215ENST00000519474 BBOX1O75936 387 aa12.06□□□□□ -0.48
HDAC3-215ENST00000519474 VEGFAP15692 232 aaPredicted RBP12.06□□□□□ -0.48
HDAC3-215ENST00000519474 CC2D2BQ6DHV5 1058 aa12.06□□□□□ -0.48
HDAC3-215ENST00000519474 RNF123Q5XPI4 1314 aa12.06□□□□□ -0.48
HDAC3-215ENST00000519474 SH3TC1Q8TE82 1336 aa12.06□□□□□ -0.48
HDAC3-215ENST00000519474 DDNO94850 711 aaPredicted RBP12.05□□□□□ -0.48
HDAC3-215ENST00000519474 HSPA6P17066 643 aa12.05□□□□□ -0.48
HDAC3-215ENST00000519474 TWISTNBQ3B726 338 aaPredicted RBP12.05□□□□□ -0.48
HDAC3-215ENST00000519474 G2E3Q7L622 706 aa12.05□□□□□ -0.48
HDAC3-215ENST00000519474 RBM46Q8TBY0 533 aaKnown RBP12.05□□□□□ -0.48
HDAC3-215ENST00000519474 METTL22Q9BUU2 404 aaPredicted RBP12.05□□□□□ -0.48
HDAC3-215ENST00000519474 SLC4A2P04920 1241 aa12.04□□□□□ -0.48
HDAC3-215ENST00000519474 EXOSC9Q06265 439 aaKnown RBP12.04□□□□□ -0.48
HDAC3-215ENST00000519474 SF3B3Q15393 1217 aaKnown RBP12.04□□□□□ -0.48
HDAC3-215ENST00000519474 RTL5Q5HYW3 569 aaPredicted RBP12.04□□□□□ -0.48
HDAC3-215ENST00000519474 KSR2Q6VAB6 950 aa12.04□□□□□ -0.48
HDAC3-215ENST00000519474 SP8Q8IXZ3 490 aa12.04□□□□□ -0.48
HDAC3-215ENST00000519474 JARID2Q92833 1246 aaPredicted RBP12.04□□□□□ -0.48
HDAC3-215ENST00000519474 PSMD1Q99460 953 aa12.04□□□□□ -0.48
HDAC3-215ENST00000519474 MYD88Q99836 296 aa12.04□□□□□ -0.48
HDAC3-215ENST00000519474 ATP6V0A2Q9Y487 856 aa12.04□□□□□ -0.48
HDAC3-215ENST00000519474 SNED1Q8TER0 1413 aa12.03□□□□□ -0.48
HDAC3-215ENST00000519474 PI4KAP2A4QPH2 592 aa12.03□□□□□ -0.48
HDAC3-215ENST00000519474 FZD9O00144 591 aa12.03□□□□□ -0.48
HDAC3-215ENST00000519474 PPEF1O14829 653 aaPredicted RBP12.03□□□□□ -0.48
HDAC3-215ENST00000519474 IARSP41252 1262 aaKnown RBP12.03□□□□□ -0.48
HDAC3-215ENST00000519474 GOLGA2Q08379 1002 aa12.03□□□□□ -0.48
HDAC3-215ENST00000519474 GRIPAP1Q4V328 841 aa12.03□□□□□ -0.48
HDAC3-215ENST00000519474 C16orf71Q8IYS4 520 aaPredicted RBP12.03□□□□□ -0.48
HDAC3-215ENST00000519474 PI4KAP1Q8N8J0 262 aa12.03□□□□□ -0.48
HDAC3-215ENST00000519474 ZBTB38Q8NAP3 1195 aaPredicted RBP12.03□□□□□ -0.48
HDAC3-215ENST00000519474 CCDC191Q8NCU4 936 aa12.03□□□□□ -0.48
HDAC3-215ENST00000519474 MAP3K2Q9Y2U5 619 aa12.03□□□□□ -0.48
HDAC3-215ENST00000519474 ABCC4O15439 1325 aa12.03□□□□□ -0.48
HDAC3-215ENST00000519474 TNRC6CQ9HCJ0 1690 aaKnown RBP12.03□□□□□ -0.48
HDAC3-215ENST00000519474 CACNA1SQ13698 1873 aa12.02□□□□□ -0.48
HDAC3-215ENST00000519474 IRS4O14654 1257 aaPredicted RBP12.02□□□□□ -0.49
HDAC3-215ENST00000519474 DDX58O95786 925 aaKnown RBP12.02□□□□□ -0.49
HDAC3-215ENST00000519474 IGKV5-2P06315 115 aa12.02□□□□□ -0.49
HDAC3-215ENST00000519474 DDX46Q7L014 1031 aaKnown RBP12.02□□□□□ -0.49
HDAC3-215ENST00000519474 FANCIQ9NVI1 1328 aa12.02□□□□□ -0.49
HDAC3-215ENST00000519474 ARFGEF2Q9Y6D5 1785 aa12.01□□□□□ -0.49
HDAC3-215ENST00000519474 PCCAP05165 728 aaPredicted RBP12.01□□□□□ -0.49
HDAC3-215ENST00000519474 FSTL1Q12841 308 aa12.01□□□□□ -0.49
HDAC3-215ENST00000519474 GRAPQ13588 217 aa12.01□□□□□ -0.49
HDAC3-215ENST00000519474 GRAPLQ8TC17 118 aaPredicted RBP12.01□□□□□ -0.49
HDAC3-215ENST00000519474 CELF1Q92879 486 aaKnown RBP12.01□□□□□ -0.49
HDAC3-215ENST00000519474 STK31Q9BXU1 1019 aa12.01□□□□□ -0.49
HDAC3-215ENST00000519474 RTFDC1Q9BY42 306 aaPredicted RBP12.01□□□□□ -0.49
HDAC3-215ENST00000519474 DICER1Q9UPY3 1922 aaKnown RBP12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms