RNA–Protein interactions for RNA: ENST00000514469.1

HMGXB3-205, Transcript of HMG-box containing 3, humanhuman

TSL 5

Gene HMGXB3, Length 975 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB3-205ENST00000514469 ALDH1B1P30837 517 aa13.62□□□□□ -0.23
HMGXB3-205ENST00000514469 CALD1Q05682 793 aaKnown RBP13.62□□□□□ -0.23
HMGXB3-205ENST00000514469 PPP1R42Q7Z4L9 355 aa13.62□□□□□ -0.23
HMGXB3-205ENST00000514469 RRAGCQ9HB90 399 aa13.62□□□□□ -0.23
HMGXB3-205ENST00000514469 HOXA10P31260 410 aaPredicted RBP13.61□□□□□ -0.23
HMGXB3-205ENST00000514469 FKBP4Q02790 459 aaKnown RBP eCLIP13.61□□□□□ -0.23
HMGXB3-205ENST00000514469 AIMP1Q12904 312 aaKnown RBP13.61□□□□□ -0.23
HMGXB3-205ENST00000514469 HSP90AB3PQ58FF7 597 aa13.61□□□□□ -0.23
HMGXB3-205ENST00000514469 DUSP27Q5VZP5 1158 aa13.61□□□□□ -0.23
HMGXB3-205ENST00000514469 C16orf71Q8IYS4 520 aaPredicted RBP13.61□□□□□ -0.23
HMGXB3-205ENST00000514469 GNAI1P63096 354 aa13.6□□□□□ -0.23
HMGXB3-205ENST00000514469 OLFM4Q6UX06 510 aa13.6□□□□□ -0.23
HMGXB3-205ENST00000514469 C3orf67Q6ZVT6 689 aa13.6□□□□□ -0.23
HMGXB3-205ENST00000514469 RPGRQ92834 1020 aaKnown RBP13.6□□□□□ -0.23
HMGXB3-205ENST00000514469 UTP14AQ9BVJ6 771 aaKnown RBP13.6□□□□□ -0.23
HMGXB3-205ENST00000514469 DBF4Q9UBU7 674 aaPredicted RBP13.6□□□□□ -0.23
HMGXB3-205ENST00000514469 LAMB2P55268 1798 aa13.59□□□□□ -0.23
HMGXB3-205ENST00000514469 FSTL1Q12841 308 aa13.59□□□□□ -0.23
HMGXB3-205ENST00000514469 TCIRG1Q13488 830 aa13.59□□□□□ -0.23
HMGXB3-205ENST00000514469 SLC10A5Q5PT55 438 aa13.59□□□□□ -0.23
HMGXB3-205ENST00000514469 NLRP10Q86W26 655 aa13.59□□□□□ -0.23
HMGXB3-205ENST00000514469 RTKN2Q8IZC4 609 aa13.59□□□□□ -0.23
HMGXB3-205ENST00000514469 POTECB2RU33 542 aa13.58□□□□□ -0.24
HMGXB3-205ENST00000514469 VEGFAP15692 232 aaPredicted RBP13.58□□□□□ -0.24
HMGXB3-205ENST00000514469 APLP1P51693 650 aa13.58□□□□□ -0.24
HMGXB3-205ENST00000514469 DPY19L2Q6NUT2 758 aa13.58□□□□□ -0.24
HMGXB3-205ENST00000514469 PLBD2Q8NHP8 589 aa13.58□□□□□ -0.24
HMGXB3-205ENST00000514469 RBM17Q96I25 401 aaKnown RBP13.58□□□□□ -0.24
HMGXB3-205ENST00000514469 CRAMP1Q96RY5 1269 aa13.58□□□□□ -0.24
HMGXB3-205ENST00000514469 PSMD1Q99460 953 aa13.58□□□□□ -0.24
HMGXB3-205ENST00000514469 HYPKQ9NX55 129 aa13.58□□□□□ -0.24
HMGXB3-205ENST00000514469 PPEF1O14829 653 aaPredicted RBP13.57□□□□□ -0.24
HMGXB3-205ENST00000514469 CCDC27Q2M243 656 aa13.57□□□□□ -0.24
HMGXB3-205ENST00000514469 CC2D2BQ6DHV5 1058 aa13.57□□□□□ -0.24
HMGXB3-205ENST00000514469 NLRP3Q96P20 1036 aa13.57□□□□□ -0.24
HMGXB3-205ENST00000514469 ZNF277Q9NRM2 450 aaPredicted RBP13.57□□□□□ -0.24
HMGXB3-205ENST00000514469 COL4A5P29400 1685 aa13.56□□□□□ -0.24
HMGXB3-205ENST00000514469 DDX60Q8IY21 1712 aaKnown RBP13.56□□□□□ -0.24
HMGXB3-205ENST00000514469 ANP32CO43423 234 aa13.56□□□□□ -0.24
HMGXB3-205ENST00000514469 ANKRD13DQ6ZTN6 518 aa13.56□□□□□ -0.24
HMGXB3-205ENST00000514469 SLC51AQ86UW1 340 aa13.56□□□□□ -0.24
HMGXB3-205ENST00000514469 SMC1BQ8NDV3 1235 aa13.56□□□□□ -0.24
HMGXB3-205ENST00000514469 ISCA1Q9BUE6 129 aa13.56□□□□□ -0.24
HMGXB3-205ENST00000514469 SH3TC1Q8TE82 1336 aa13.56□□□□□ -0.24
HMGXB3-205ENST00000514469 IARSP41252 1262 aaKnown RBP13.55□□□□□ -0.24
HMGXB3-205ENST00000514469 GRIPAP1Q4V328 841 aa13.55□□□□□ -0.24
HMGXB3-205ENST00000514469 NCBP3Q53F19 620 aaKnown RBP13.55□□□□□ -0.24
HMGXB3-205ENST00000514469 SYNE4Q8N205 404 aa13.55□□□□□ -0.24
HMGXB3-205ENST00000514469 C8orf58Q8NAV2 365 aa13.55□□□□□ -0.24
HMGXB3-205ENST00000514469 L3MBTL3Q96JM7 780 aaPredicted RBP13.55□□□□□ -0.24
HMGXB3-205ENST00000514469 MRS2Q9HD23 443 aa13.55□□□□□ -0.24
HMGXB3-205ENST00000514469 TRMT112Q9UI30 125 aaKnown RBP13.55□□□□□ -0.24
HMGXB3-205ENST00000514469 ABCC4O15439 1325 aa13.55□□□□□ -0.24
HMGXB3-205ENST00000514469 ZNF541Q9H0D2 1346 aa13.55□□□□□ -0.24
HMGXB3-205ENST00000514469 DDNO94850 711 aaPredicted RBP13.54□□□□□ -0.24
HMGXB3-205ENST00000514469 HCLS1P14317 486 aaPredicted RBP13.54□□□□□ -0.24
HMGXB3-205ENST00000514469 WWC1Q8IX03 1113 aa13.54□□□□□ -0.24
HMGXB3-205ENST00000514469 LRRC37AA6NMS7 1700 aa13.53□□□□□ -0.24
HMGXB3-205ENST00000514469 FZD9O00144 591 aa13.53□□□□□ -0.24
HMGXB3-205ENST00000514469 ELL2O00472 640 aaPredicted RBP13.53□□□□□ -0.24
HMGXB3-205ENST00000514469 TSR2Q969E8 191 aaKnown RBP13.53□□□□□ -0.24
HMGXB3-205ENST00000514469 PHAXQ9H814 394 aaKnown RBP13.53□□□□□ -0.24
HMGXB3-205ENST00000514469 ATP6V0A2Q9Y487 856 aa13.53□□□□□ -0.24
HMGXB3-205ENST00000514469 IL16Q14005 1332 aa13.53□□□□□ -0.24
HMGXB3-205ENST00000514469 ATP5J2-PTCD1G3V325 749 aa13.52□□□□□ -0.25
HMGXB3-205ENST00000514469 GOLGA2Q08379 1002 aa13.52□□□□□ -0.25
HMGXB3-205ENST00000514469 TRIM28Q13263 835 aaKnown RBP13.52□□□□□ -0.25
HMGXB3-205ENST00000514469 TSPYL6Q8N831 410 aa13.52□□□□□ -0.25
HMGXB3-205ENST00000514469 SCN4AP35499 1836 aa13.52□□□□□ -0.25
HMGXB3-205ENST00000514469 ADAMTSL1Q8N6G6 1762 aa13.51□□□□□ -0.25
HMGXB3-205ENST00000514469 DUOX1Q9NRD9 1551 aa13.51□□□□□ -0.25
HMGXB3-205ENST00000514469 IQCA1LA6NCM1 817 aa13.51□□□□□ -0.25
HMGXB3-205ENST00000514469 CCDC30Q5VVM6 783 aa13.51□□□□□ -0.25
HMGXB3-205ENST00000514469 RIC3Q7Z5B4 369 aa13.51□□□□□ -0.25
HMGXB3-205ENST00000514469 DNAJC5GQ8N7S2 189 aa13.51□□□□□ -0.25
HMGXB3-205ENST00000514469 CHMP4AQ9BY43 222 aa13.51□□□□□ -0.25
HMGXB3-205ENST00000514469 COL4A1P02462 1669 aa13.5□□□□□ -0.25
HMGXB3-205ENST00000514469 TCERG1O14776 1098 aaKnown RBP13.5□□□□□ -0.25
HMGXB3-205ENST00000514469 BBOX1O75936 387 aa13.5□□□□□ -0.25
HMGXB3-205ENST00000514469 GRAPQ13588 217 aa13.5□□□□□ -0.25
HMGXB3-205ENST00000514469 DDX46Q7L014 1031 aaKnown RBP13.5□□□□□ -0.25
HMGXB3-205ENST00000514469 GRAPLQ8TC17 118 aaPredicted RBP13.5□□□□□ -0.25
HMGXB3-205ENST00000514469 JDP2Q8WYK2 163 aa13.5□□□□□ -0.25
HMGXB3-205ENST00000514469 ZNF428Q96B54 188 aa13.5□□□□□ -0.25
HMGXB3-205ENST00000514469 FAM89AQ96GI7 184 aa13.5□□□□□ -0.25
HMGXB3-205ENST00000514469 POTEIP0CG38 1075 aa13.49□□□□□ -0.25
HMGXB3-205ENST00000514469 POTEJP0CG39 1038 aa13.49□□□□□ -0.25
HMGXB3-205ENST00000514469 SF3B3Q15393 1217 aaKnown RBP13.49□□□□□ -0.25
HMGXB3-205ENST00000514469 SP8Q8IXZ3 490 aa13.49□□□□□ -0.25
HMGXB3-205ENST00000514469 GPC2Q8N158 579 aa13.49□□□□□ -0.25
HMGXB3-205ENST00000514469 RTFDC1Q9BY42 306 aaPredicted RBP13.49□□□□□ -0.25
HMGXB3-205ENST00000514469 VPS33BQ9H267 617 aa13.49□□□□□ -0.25
HMGXB3-205ENST00000514469 TAF1DQ9H5J8 278 aaPredicted RBP13.49□□□□□ -0.25
HMGXB3-205ENST00000514469 LTBP1Q14766 1721 aa13.48□□□□□ -0.25
HMGXB3-205ENST00000514469 FANCIQ9NVI1 1328 aa13.48□□□□□ -0.25
HMGXB3-205ENST00000514469 DDX58O95786 925 aaKnown RBP13.48□□□□□ -0.25
HMGXB3-205ENST00000514469 HTRA3P83110 453 aa13.48□□□□□ -0.25
HMGXB3-205ENST00000514469 TWISTNBQ3B726 338 aaPredicted RBP13.48□□□□□ -0.25
HMGXB3-205ENST00000514469 CHADLQ6NUI6 762 aa13.48□□□□□ -0.25
HMGXB3-205ENST00000514469 TMC4Q7Z404 712 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms