RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 TRMT112Q9UI30 125 aaKnown RBP19.77■□□□□ 0.76
NUP54-214ENST00000514307 EXOC6BQ9Y2D4 811 aa19.77■□□□□ 0.76
NUP54-214ENST00000514307 APBB1O00213 710 aa19.76■□□□□ 0.75
NUP54-214ENST00000514307 GNPATO15228 680 aa19.76■□□□□ 0.75
NUP54-214ENST00000514307 KCNQ4P56696 695 aa19.76■□□□□ 0.75
NUP54-214ENST00000514307 JARID2Q92833 1246 aaPredicted RBP19.76■□□□□ 0.75
NUP54-214ENST00000514307 PLA2G12BQ9BX93 195 aa19.76■□□□□ 0.75
NUP54-214ENST00000514307 TSHZ2Q9NRE2 1034 aa19.76■□□□□ 0.75
NUP54-214ENST00000514307 NARFQ9UHQ1 456 aa19.76■□□□□ 0.75
NUP54-214ENST00000514307 ZNF831Q5JPB2 1677 aa19.75■□□□□ 0.75
NUP54-214ENST00000514307 NHSQ6T4R5 1651 aa19.75■□□□□ 0.75
NUP54-214ENST00000514307 APBA3O96018 575 aa19.75■□□□□ 0.75
NUP54-214ENST00000514307 ADRA2BP18089 450 aa19.75■□□□□ 0.75
NUP54-214ENST00000514307 GPTP24298 496 aa19.75■□□□□ 0.75
NUP54-214ENST00000514307 FOXO4P98177 505 aa19.75■□□□□ 0.75
NUP54-214ENST00000514307 LMBR1LQ6UX01 489 aa19.75■□□□□ 0.75
NUP54-214ENST00000514307 UTP14AQ9BVJ6 771 aaKnown RBP19.75■□□□□ 0.75
NUP54-214ENST00000514307 CDHR2Q9BYE9 1310 aa19.75■□□□□ 0.75
NUP54-214ENST00000514307 RFC4P35249 363 aa19.74■□□□□ 0.75
NUP54-214ENST00000514307 FAM89AQ96GI7 184 aa19.74■□□□□ 0.75
NUP54-214ENST00000514307 BACH2Q9BYV9 841 aa19.74■□□□□ 0.75
NUP54-214ENST00000514307 COPRSQ9NQ92 184 aa19.74■□□□□ 0.75
NUP54-214ENST00000514307 EIF5BO60841 1220 aaKnown RBP19.73■□□□□ 0.75
NUP54-214ENST00000514307 EPHA10Q5JZY3 1008 aa19.73■□□□□ 0.75
NUP54-214ENST00000514307 RHPN1Q8TCX5 695 aa19.73■□□□□ 0.75
NUP54-214ENST00000514307 NIP7Q9Y221 180 aaKnown RBP eCLIP19.73■□□□□ 0.75
NUP54-214ENST00000514307 N4BP2Q86UW6 1770 aaPredicted RBP19.72■□□□□ 0.75
NUP54-214ENST00000514307 TJP1Q07157 1748 aa19.72■□□□□ 0.75
NUP54-214ENST00000514307 TXNRD1Q16881 649 aa19.72■□□□□ 0.75
NUP54-214ENST00000514307 RTL5Q5HYW3 569 aaPredicted RBP19.72■□□□□ 0.75
NUP54-214ENST00000514307 PLEKHM2Q8IWE5 1019 aa19.72■□□□□ 0.75
NUP54-214ENST00000514307 CLASRPQ8N2M8 674 aaKnown RBP19.72■□□□□ 0.75
NUP54-214ENST00000514307 CHMP3Q9Y3E7 222 aa19.72■□□□□ 0.75
NUP54-214ENST00000514307 IRS4O14654 1257 aaPredicted RBP19.71■□□□□ 0.75
NUP54-214ENST00000514307 SMARCA5O60264 1052 aaPredicted RBP19.71■□□□□ 0.75
NUP54-214ENST00000514307 PDE8AO60658 829 aa19.71■□□□□ 0.75
NUP54-214ENST00000514307 CSF1RP07333 972 aa19.71■□□□□ 0.75
NUP54-214ENST00000514307 CCDC57Q2TAC2 916 aa19.71■□□□□ 0.75
NUP54-214ENST00000514307 C16orf71Q8IYS4 520 aaPredicted RBP19.71■□□□□ 0.75
NUP54-214ENST00000514307 ARHGEF1Q92888 912 aaKnown RBP19.71■□□□□ 0.75
NUP54-214ENST00000514307 LRRC4BQ9NT99 713 aa19.71■□□□□ 0.75
NUP54-214ENST00000514307 CICQ96RK0 1608 aaPredicted RBP19.71■□□□□ 0.75
NUP54-214ENST00000514307 BMP2KLQ5H9B9 411 aa19.7■□□□□ 0.74
NUP54-214ENST00000514307 SUSD4Q5VX71 490 aa19.7■□□□□ 0.74
NUP54-214ENST00000514307 SETDB2Q96T68 719 aa19.7■□□□□ 0.74
NUP54-214ENST00000514307 FBXO3Q9UK99 471 aa19.7■□□□□ 0.74
NUP54-214ENST00000514307 SH3TC1Q8TE82 1336 aa19.7■□□□□ 0.74
NUP54-214ENST00000514307 NYXQ9GZU5 481 aa19.69■□□□□ 0.74
NUP54-214ENST00000514307 BCL11AQ9H165 835 aa19.69■□□□□ 0.74
NUP54-214ENST00000514307 OSBPL3Q9H4L5 887 aa19.69■□□□□ 0.74
NUP54-214ENST00000514307 GTF2E1P29083 439 aaPredicted RBP19.68■□□□□ 0.74
NUP54-214ENST00000514307 RFX5P48382 616 aaPredicted RBP19.68■□□□□ 0.74
NUP54-214ENST00000514307 PTPN12Q05209 780 aaKnown RBP19.68■□□□□ 0.74
NUP54-214ENST00000514307 IFIT5Q13325 482 aaKnown RBP19.68■□□□□ 0.74
NUP54-214ENST00000514307 USPL1Q5W0Q7 1092 aa19.68■□□□□ 0.74
NUP54-214ENST00000514307 FLAD1Q8NFF5 587 aa19.68■□□□□ 0.74
NUP54-214ENST00000514307 BTAF1O14981 1849 aa19.67■□□□□ 0.74
NUP54-214ENST00000514307 SSFA2P28290 1259 aa19.67■□□□□ 0.74
NUP54-214ENST00000514307 TAF7LQ5H9L4 462 aa19.67■□□□□ 0.74
NUP54-214ENST00000514307 TPTE2Q6XPS3 522 aa19.67■□□□□ 0.74
NUP54-214ENST00000514307 GPATCH3Q96I76 525 aa19.67■□□□□ 0.74
NUP54-214ENST00000514307 STAP2Q9UGK3 403 aa19.67■□□□□ 0.74
NUP54-214ENST00000514307 PA2G4Q9UQ80 394 aaKnown RBP19.67■□□□□ 0.74
NUP54-214ENST00000514307 ARFGEF2Q9Y6D5 1785 aa19.67■□□□□ 0.74
NUP54-214ENST00000514307 IFIT2P09913 472 aaKnown RBP19.66■□□□□ 0.74
NUP54-214ENST00000514307 IL15P40933 162 aaPredicted RBP19.66■□□□□ 0.74
NUP54-214ENST00000514307 PDE1AP54750 535 aa19.66■□□□□ 0.74
NUP54-214ENST00000514307 IL1RAPL2Q9NP60 686 aa19.66■□□□□ 0.74
NUP54-214ENST00000514307 ANKRD18BA2A2Z9 1011 aa19.65■□□□□ 0.74
NUP54-214ENST00000514307 CIAO1O76071 339 aa19.65■□□□□ 0.74
NUP54-214ENST00000514307 MX1P20591 662 aa19.65■□□□□ 0.74
NUP54-214ENST00000514307 CTSWP56202 376 aa19.65■□□□□ 0.74
NUP54-214ENST00000514307 SF3B2Q13435 895 aaKnown RBP19.65■□□□□ 0.74
NUP54-214ENST00000514307 PROM2Q8N271 834 aa19.65■□□□□ 0.74
NUP54-214ENST00000514307 TTLL11Q8NHH1 800 aa19.65■□□□□ 0.74
NUP54-214ENST00000514307 RBM19Q9Y4C8 960 aaKnown RBP19.65■□□□□ 0.74
NUP54-214ENST00000514307 UBN2Q6ZU65 1347 aa19.65■□□□□ 0.74
NUP54-214ENST00000514307 TNS1Q9HBL0 1735 aaKnown RBP19.65■□□□□ 0.74
NUP54-214ENST00000514307 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.64■□□□□ 0.73
NUP54-214ENST00000514307 EYA2O00167 538 aa19.64■□□□□ 0.73
NUP54-214ENST00000514307 SLC10A5Q5PT55 438 aa19.64■□□□□ 0.73
NUP54-214ENST00000514307 TTC22Q5TAA0 569 aa19.64■□□□□ 0.73
NUP54-214ENST00000514307 SIL1Q9H173 461 aa19.64■□□□□ 0.73
NUP54-214ENST00000514307 AOX1Q06278 1338 aa19.64■□□□□ 0.73
NUP54-214ENST00000514307 RREB1Q92766 1687 aa19.64■□□□□ 0.73
NUP54-214ENST00000514307 FAM177BA6PVY3 158 aa19.63■□□□□ 0.73
NUP54-214ENST00000514307 ERC2O15083 957 aa19.63■□□□□ 0.73
NUP54-214ENST00000514307 PHF14O94880 888 aa19.63■□□□□ 0.73
NUP54-214ENST00000514307 SASH1O94885 1247 aa19.63■□□□□ 0.73
NUP54-214ENST00000514307 BCL2L12Q9HB09 334 aa19.63■□□□□ 0.73
NUP54-214ENST00000514307 USP42Q9H9J4 1324 aaKnown RBP19.62■□□□□ 0.73
NUP54-214ENST00000514307 NTSR2O95665 410 aa19.62■□□□□ 0.73
NUP54-214ENST00000514307 C8orf34Q49A92 452 aa19.62■□□□□ 0.73
NUP54-214ENST00000514307 CCDC152Q4G0S7 254 aa19.62■□□□□ 0.73
NUP54-214ENST00000514307 TBC1D9BQ66K14 1250 aa19.62■□□□□ 0.73
NUP54-214ENST00000514307 CASC1Q6TDU7 716 aa19.62■□□□□ 0.73
NUP54-214ENST00000514307 BICDL1Q6ZP65 573 aa19.62■□□□□ 0.73
NUP54-214ENST00000514307 NBPF5PQ86XG9 351 aaPredicted RBP19.62■□□□□ 0.73
NUP54-214ENST00000514307 SYNE4Q8N205 404 aa19.62■□□□□ 0.73
NUP54-214ENST00000514307 UPF2Q9HAU5 1272 aaKnown RBP19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 78.8 ms