RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 RGL2O15211 777 aa27.15■■□□□ 1.94
SQSTM1-215ENST00000514093 LMOD1P29536 600 aaPredicted RBP27.15■■□□□ 1.94
SQSTM1-215ENST00000514093 CYP4F22Q6NT55 531 aa27.15■■□□□ 1.94
SQSTM1-215ENST00000514093 LTBP1Q14766 1721 aa27.15■■□□□ 1.94
SQSTM1-215ENST00000514093 TCERG1O14776 1098 aaKnown RBP27.14■■□□□ 1.94
SQSTM1-215ENST00000514093 U2AF1L5P0DN76 240 aaPredicted RBP27.14■■□□□ 1.94
SQSTM1-215ENST00000514093 SCNN1DP51172 638 aa27.14■■□□□ 1.94
SQSTM1-215ENST00000514093 U2AF1Q01081 240 aaKnown RBP eCLIP27.14■■□□□ 1.943e-6■□□□□ 8.7
SQSTM1-215ENST00000514093 CRY2Q49AN0 593 aa27.14■■□□□ 1.94
SQSTM1-215ENST00000514093 CAPNS2Q96L46 248 aa27.14■■□□□ 1.94
SQSTM1-215ENST00000514093 CFAP53Q96M91 514 aa27.14■■□□□ 1.94
SQSTM1-215ENST00000514093 TRAF5O00463 557 aa27.13■■□□□ 1.93
SQSTM1-215ENST00000514093 LARGE2Q8N3Y3 721 aa27.13■■□□□ 1.93
SQSTM1-215ENST00000514093 CCDC85CA6NKD9 419 aa27.12■■□□□ 1.93
SQSTM1-215ENST00000514093 NYXQ9GZU5 481 aa27.12■■□□□ 1.93
SQSTM1-215ENST00000514093 NUDCQ9Y266 331 aa27.12■■□□□ 1.93
SQSTM1-215ENST00000514093 CST9Q5W186 159 aa27.11■■□□□ 1.93
SQSTM1-215ENST00000514093 CC2D2BQ6DHV5 1058 aa27.11■■□□□ 1.93
SQSTM1-215ENST00000514093 RPGRQ92834 1020 aaKnown RBP27.11■■□□□ 1.93
SQSTM1-215ENST00000514093 GPR101Q96P66 508 aaPredicted RBP27.11■■□□□ 1.93
SQSTM1-215ENST00000514093 TSKSQ9UJT2 592 aa27.11■■□□□ 1.93
SQSTM1-215ENST00000514093 SLC34A2O95436 690 aa27.1■■□□□ 1.93
SQSTM1-215ENST00000514093 TAF7Q15545 349 aaPredicted RBP27.1■■□□□ 1.93
SQSTM1-215ENST00000514093 BEGAINQ9BUH8 593 aa27.1■■□□□ 1.93
SQSTM1-215ENST00000514093 GPTP24298 496 aa27.09■■□□□ 1.93
SQSTM1-215ENST00000514093 TTLL7Q6ZT98 887 aa27.09■■□□□ 1.93
SQSTM1-215ENST00000514093 AOC2O75106 756 aa27.08■■□□□ 1.93
SQSTM1-215ENST00000514093 HOXA10P31260 410 aaPredicted RBP27.08■■□□□ 1.93
SQSTM1-215ENST00000514093 ECE1P42892 770 aa27.08■■□□□ 1.93
SQSTM1-215ENST00000514093 RRP7AQ9Y3A4 280 aaKnown RBP27.08■■□□□ 1.93
SQSTM1-215ENST00000514093 USP50Q70EL3 339 aaPredicted RBP27.07■■□□□ 1.92
SQSTM1-215ENST00000514093 ERVV-1B6SEH8 477 aa27.06■■□□□ 1.92
SQSTM1-215ENST00000514093 SUSD4Q5VX71 490 aa27.06■■□□□ 1.92
SQSTM1-215ENST00000514093 MAP3K15Q6ZN16 1313 aa27.06■■□□□ 1.92
SQSTM1-215ENST00000514093 UBN2Q6ZU65 1347 aa27.06■■□□□ 1.92
SQSTM1-215ENST00000514093 PPEF1O14829 653 aaPredicted RBP27.05■■□□□ 1.92
SQSTM1-215ENST00000514093 HTATSF1O43719 755 aaKnown RBP27.05■■□□□ 1.92
SQSTM1-215ENST00000514093 MYL6BP14649 208 aa27.05■■□□□ 1.92
SQSTM1-215ENST00000514093 C3orf67Q6ZVT6 689 aa27.05■■□□□ 1.92
SQSTM1-215ENST00000514093 NIM1KQ8IY84 436 aa27.05■■□□□ 1.92
SQSTM1-215ENST00000514093 RBM17Q96I25 401 aaKnown RBP27.05■■□□□ 1.92
SQSTM1-215ENST00000514093 ZBTB3Q9H5J0 574 aa27.05■■□□□ 1.92
SQSTM1-215ENST00000514093 TLL2Q9Y6L7 1015 aa27.05■■□□□ 1.92
SQSTM1-215ENST00000514093 KIF6Q6ZMV9 814 aa27.04■■□□□ 1.92
SQSTM1-215ENST00000514093 NUP98P52948 1817 aa27.04■■□□□ 1.92
SQSTM1-215ENST00000514093 PPIP5K2O43314 1243 aa27.03■■□□□ 1.92
SQSTM1-215ENST00000514093 MLLT1Q03111 559 aaPredicted RBP27.03■■□□□ 1.92
SQSTM1-215ENST00000514093 CRAMP1Q96RY5 1269 aa27.03■■□□□ 1.92
SQSTM1-215ENST00000514093 THSD7BQ9C0I4 1608 aa27.03■■□□□ 1.92
SQSTM1-215ENST00000514093 AOC3Q16853 763 aa27.02■■□□□ 1.92
SQSTM1-215ENST00000514093 GRIPAP1Q4V328 841 aa27.02■■□□□ 1.92
SQSTM1-215ENST00000514093 PPP2R1AP30153 589 aa27.01■■□□□ 1.91
SQSTM1-215ENST00000514093 ADARB2Q9NS39 739 aaKnown RBP27.01■■□□□ 1.91
SQSTM1-215ENST00000514093 LAMB4A4D0S4 1761 aa27.01■■□□□ 1.91
SQSTM1-215ENST00000514093 TRPM7Q96QT4 1865 aa27■■□□□ 1.91
SQSTM1-215ENST00000514093 GPRC5DQ9NZD1 345 aa27■■□□□ 1.91
SQSTM1-215ENST00000514093 RIC1Q4ADV7 1423 aa26.99■■□□□ 1.91
SQSTM1-215ENST00000514093 CELF2O95319 508 aaKnown RBP26.99■■□□□ 1.91
SQSTM1-215ENST00000514093 NTSR2O95665 410 aa26.99■■□□□ 1.91
SQSTM1-215ENST00000514093 MAP2K2P36507 400 aa26.99■■□□□ 1.91
SQSTM1-215ENST00000514093 ZNF34Q8IZ26 560 aa26.99■■□□□ 1.91
SQSTM1-215ENST00000514093 CFAP44Q96MT7 982 aa26.99■■□□□ 1.91
SQSTM1-215ENST00000514093 EIF4A1P60842 406 aaKnown RBP26.98■■□□□ 1.91
SQSTM1-215ENST00000514093 CXCL9Q07325 125 aa26.98■■□□□ 1.91
SQSTM1-215ENST00000514093 SAPCD2Q86UD0 394 aa26.98■■□□□ 1.91
SQSTM1-215ENST00000514093 GLIS2Q9BZE0 524 aaPredicted RBP26.98■■□□□ 1.91
SQSTM1-215ENST00000514093 RGS19P49795 217 aa26.97■■□□□ 1.91
SQSTM1-215ENST00000514093 IBTKQ9P2D0 1353 aaPredicted RBP26.97■■□□□ 1.91
SQSTM1-215ENST00000514093 GMPSP49915 693 aaPredicted RBP26.96■■□□□ 1.91
SQSTM1-215ENST00000514093 THUMPD2Q9BTF0 503 aaKnown RBP26.96■■□□□ 1.91
SQSTM1-215ENST00000514093 ZNF408Q9H9D4 720 aa26.96■■□□□ 1.91
SQSTM1-215ENST00000514093 PNISRQ8TF01 805 aaKnown RBP26.95■■□□□ 1.9
SQSTM1-215ENST00000514093 NLRP3Q96P20 1036 aa26.95■■□□□ 1.9
SQSTM1-215ENST00000514093 MCOLN1Q9GZU1 580 aa26.95■■□□□ 1.9
SQSTM1-215ENST00000514093 TMX4Q9H1E5 349 aaPredicted RBP26.95■■□□□ 1.9
SQSTM1-215ENST00000514093 ZNRF3Q9ULT6 936 aa26.95■■□□□ 1.9
SQSTM1-215ENST00000514093 ATP6V0A2Q9Y487 856 aa26.95■■□□□ 1.9
SQSTM1-215ENST00000514093 GIGYF2Q6Y7W6 1299 aaKnown RBP26.94■■□□□ 1.9
SQSTM1-215ENST00000514093 PPP1R42Q7Z4L9 355 aa26.93■■□□□ 1.9
SQSTM1-215ENST00000514093 ABCC4O15439 1325 aa26.92■■□□□ 1.9
SQSTM1-215ENST00000514093 KDM3BQ7LBC6 1761 aa26.92■■□□□ 1.9
SQSTM1-215ENST00000514093 HIRAP54198 1017 aaPredicted RBP26.92■■□□□ 1.9
SQSTM1-215ENST00000514093 RAD17O75943 681 aa26.91■■□□□ 1.9
SQSTM1-215ENST00000514093 VPS33BQ9H267 617 aa26.91■■□□□ 1.9
SQSTM1-215ENST00000514093 CIAPIN1Q6FI81 312 aa26.9■■□□□ 1.9
SQSTM1-215ENST00000514093 BCL2L13Q9BXK5 485 aa26.9■■□□□ 1.9
SQSTM1-215ENST00000514093 RTFDC1Q9BY42 306 aaPredicted RBP26.9■■□□□ 1.9
SQSTM1-215ENST00000514093 CASP8AP2Q9UKL3 1982 aa26.89■■□□□ 1.9
SQSTM1-215ENST00000514093 SHTN1A0MZ66 631 aa26.89■■□□□ 1.9
SQSTM1-215ENST00000514093 PARP10Q53GL7 1025 aa26.89■■□□□ 1.9
SQSTM1-215ENST00000514093 DPP8Q6V1X1 898 aaPredicted RBP26.89■■□□□ 1.9
SQSTM1-215ENST00000514093 SUPT20HQ8NEM7 779 aa26.89■■□□□ 1.9
SQSTM1-215ENST00000514093 TRPM4Q8TD43 1214 aa26.89■■□□□ 1.9
SQSTM1-215ENST00000514093 UTP14AQ9BVJ6 771 aaKnown RBP26.89■■□□□ 1.9
SQSTM1-215ENST00000514093 PGAP2Q9UHJ9 254 aa26.89■■□□□ 1.9
SQSTM1-215ENST00000514093 CA12O43570 354 aa26.88■■□□□ 1.89
SQSTM1-215ENST00000514093 NEFMP07197 916 aa26.88■■□□□ 1.89
SQSTM1-215ENST00000514093 BRPF1P55201 1214 aaPredicted RBP26.88■■□□□ 1.89
SQSTM1-215ENST00000514093 SLC10A5Q5PT55 438 aa26.88■■□□□ 1.89
SQSTM1-215ENST00000514093 DLK2Q6UY11 383 aa26.88■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 86.1 ms