RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 PSMG3-AS1Q96PY0 264 aa7.19□□□□□ -1.26
NUP54-212ENST00000513248 ABCC9O60706 1549 aa7.18□□□□□ -1.26
NUP54-212ENST00000513248 TMEM88BA6NKF7 163 aa7.18□□□□□ -1.26
NUP54-212ENST00000513248 RSPO4Q2I0M5 234 aaPredicted RBP7.18□□□□□ -1.26
NUP54-212ENST00000513248 NKAPLQ5M9Q1 402 aa7.18□□□□□ -1.26
NUP54-212ENST00000513248 TBCELQ5QJ74 424 aa7.18□□□□□ -1.26
NUP54-212ENST00000513248 L3MBTL2Q969R5 705 aa7.18□□□□□ -1.26
NUP54-212ENST00000513248 TSPAN10Q9H1Z9 355 aaPredicted RBP7.18□□□□□ -1.26
NUP54-212ENST00000513248 POTEAQ6S8J7 498 aa7.17□□□□□ -1.26
NUP54-212ENST00000513248 STK32AQ8WU08 396 aa7.17□□□□□ -1.26
NUP54-212ENST00000513248 C7orf43Q8WVR3 580 aa7.17□□□□□ -1.26
NUP54-212ENST00000513248 NACC1Q96RE7 527 aa7.17□□□□□ -1.26
NUP54-212ENST00000513248 SLAIN2Q9P270 581 aa7.17□□□□□ -1.26
NUP54-212ENST00000513248 NOVA2Q9UNW9 492 aaKnown RBP7.17□□□□□ -1.26
NUP54-212ENST00000513248 PARP3Q9Y6F1 533 aa7.17□□□□□ -1.26
NUP54-212ENST00000513248 APBA3O96018 575 aa7.16□□□□□ -1.26
NUP54-212ENST00000513248 NOS2P35228 1153 aa7.16□□□□□ -1.26
NUP54-212ENST00000513248 PSMA6P60900 246 aaKnown RBP7.16□□□□□ -1.26
NUP54-212ENST00000513248 COL9A3Q14050 684 aaPredicted RBP7.16□□□□□ -1.26
NUP54-212ENST00000513248 LRRC69Q6ZNQ3 347 aa7.16□□□□□ -1.26
NUP54-212ENST00000513248 M0R082 166 aa7.15□□□□□ -1.26
NUP54-212ENST00000513248 NEUROD1Q13562 356 aa7.15□□□□□ -1.26
NUP54-212ENST00000513248 TMEM164Q5U3C3 297 aa7.15□□□□□ -1.26
NUP54-212ENST00000513248 ZNF417Q8TAU3 575 aa7.15□□□□□ -1.26
NUP54-212ENST00000513248 ZNF587Q96SQ5 575 aaPredicted RBP7.15□□□□□ -1.26
NUP54-212ENST00000513248 TPSG1Q9NRR2 321 aa7.15□□□□□ -1.26
NUP54-212ENST00000513248 ZNF232Q9UNY5 417 aa7.15□□□□□ -1.26
NUP54-212ENST00000513248 CCDC180Q9P1Z9 1646 aa7.15□□□□□ -1.27
NUP54-212ENST00000513248 SERTM1A2A2V5 107 aa7.14□□□□□ -1.27
NUP54-212ENST00000513248 HIRAP54198 1017 aaPredicted RBP7.14□□□□□ -1.27
NUP54-212ENST00000513248 KCNQ4P56696 695 aa7.14□□□□□ -1.27
NUP54-212ENST00000513248 SWI5Q1ZZU3 235 aa7.14□□□□□ -1.27
NUP54-212ENST00000513248 C1orf53Q5VUE5 145 aa7.14□□□□□ -1.27
NUP54-212ENST00000513248 MICALL1Q8N3F8 863 aa7.14□□□□□ -1.27
NUP54-212ENST00000513248 HINFPQ9BQA5 517 aa7.14□□□□□ -1.27
NUP54-212ENST00000513248 NEUROD4Q9HD90 331 aa7.14□□□□□ -1.27
NUP54-212ENST00000513248 ACIN1Q9UKV3 1341 aaKnown RBP7.14□□□□□ -1.27
NUP54-212ENST00000513248 CHMP3Q9Y3E7 222 aa7.14□□□□□ -1.27
NUP54-212ENST00000513248 STARD13Q9Y3M8 1113 aa7.14□□□□□ -1.27
NUP54-212ENST00000513248 DYRK3O43781 588 aa7.13□□□□□ -1.27
NUP54-212ENST00000513248 C21orf2O43822 256 aa7.13□□□□□ -1.27
NUP54-212ENST00000513248 PPP1R12BO60237 982 aaPredicted RBP7.13□□□□□ -1.27
NUP54-212ENST00000513248 OCLNQ16625 522 aa7.13□□□□□ -1.27
NUP54-212ENST00000513248 SH3PXD2AQ5TCZ1 1133 aa7.13□□□□□ -1.27
NUP54-212ENST00000513248 FAM200AQ8TCP9 573 aa7.13□□□□□ -1.27
NUP54-212ENST00000513248 SCG3Q8WXD2 468 aaKnown RBP7.13□□□□□ -1.27
NUP54-212ENST00000513248 CLP1Q92989 425 aaKnown RBP7.13□□□□□ -1.27
NUP54-212ENST00000513248 SLC30A3Q99726 388 aa7.13□□□□□ -1.27
NUP54-212ENST00000513248 USTQ9Y2C2 406 aa7.13□□□□□ -1.27
NUP54-212ENST00000513248 ATAD2Q6PL18 1390 aa7.12□□□□□ -1.27
NUP54-212ENST00000513248 LGR5O75473 907 aa7.12□□□□□ -1.27
NUP54-212ENST00000513248 ALBP02768 609 aa7.12□□□□□ -1.27
NUP54-212ENST00000513248 NID1P14543 1247 aa7.12□□□□□ -1.27
NUP54-212ENST00000513248 WEE1P30291 646 aa7.12□□□□□ -1.27
NUP54-212ENST00000513248 ADH7P40394 386 aa7.12□□□□□ -1.27
NUP54-212ENST00000513248 SPEM2Q0P670 501 aa7.12□□□□□ -1.27
NUP54-212ENST00000513248 SFSWAPQ12872 951 aaKnown RBP7.12□□□□□ -1.27
NUP54-212ENST00000513248 TRIM28Q13263 835 aaKnown RBP7.12□□□□□ -1.27
NUP54-212ENST00000513248 RETREG2Q8NC44 543 aa7.12□□□□□ -1.27
NUP54-212ENST00000513248 GAS2L2Q8NHY3 880 aa7.12□□□□□ -1.27
NUP54-212ENST00000513248 KRTAP9-2Q9BYQ4 174 aa7.12□□□□□ -1.27
NUP54-212ENST00000513248 ANKIB1Q9P2G1 1089 aa7.12□□□□□ -1.27
NUP54-212ENST00000513248 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.11□□□□□ -1.27
NUP54-212ENST00000513248 C20orf204Q6ZNR8 217 aa7.11□□□□□ -1.27
NUP54-212ENST00000513248 STAG2Q8N3U4 1231 aa7.11□□□□□ -1.27
NUP54-212ENST00000513248 RHPN1Q8TCX5 695 aa7.11□□□□□ -1.27
NUP54-212ENST00000513248 IGFBP4P22692 258 aa7.1□□□□□ -1.27
NUP54-212ENST00000513248 FOXD4L6Q3SYB3 417 aaPredicted RBP7.1□□□□□ -1.27
NUP54-212ENST00000513248 FOXD4L3Q6VB84 417 aaPredicted RBP7.1□□□□□ -1.27
NUP54-212ENST00000513248 CHMP7Q8WUX9 453 aaPredicted RBP7.1□□□□□ -1.27
NUP54-212ENST00000513248 EFCC1Q9HA90 598 aa7.1□□□□□ -1.27
NUP54-212ENST00000513248 BRD7Q9NPI1 651 aa7.1□□□□□ -1.27
NUP54-212ENST00000513248 H2AFB1P0C5Y9 115 aa7.09□□□□□ -1.27
NUP54-212ENST00000513248 H2AFB2P0C5Z0 115 aa7.09□□□□□ -1.27
NUP54-212ENST00000513248 ARTNQ5T4W7 220 aa7.09□□□□□ -1.27
NUP54-212ENST00000513248 PHLDB3Q6NSJ2 640 aa7.09□□□□□ -1.27
NUP54-212ENST00000513248 C2orf49Q9BVC5 232 aaPredicted RBP7.09□□□□□ -1.27
NUP54-212ENST00000513248 PHACTR1Q9C0D0 580 aa7.09□□□□□ -1.27
NUP54-212ENST00000513248 HCN4Q9Y3Q4 1203 aa7.09□□□□□ -1.27
NUP54-212ENST00000513248 SCO2A0A1W2PP80 73 aa7.08□□□□□ -1.28
NUP54-212ENST00000513248 CARNS1A5YM72 827 aa7.08□□□□□ -1.28
NUP54-212ENST00000513248 C9orf172C9J069 976 aa7.08□□□□□ -1.28
NUP54-212ENST00000513248 FAM229AH3BQW9 127 aa7.08□□□□□ -1.28
NUP54-212ENST00000513248 LILRB5O75023 590 aa7.08□□□□□ -1.28
NUP54-212ENST00000513248 ELNP15502 786 aa7.08□□□□□ -1.28
NUP54-212ENST00000513248 TYRO3Q06418 890 aa7.08□□□□□ -1.28
NUP54-212ENST00000513248 KCNH4Q9UQ05 1017 aa7.08□□□□□ -1.28
NUP54-212ENST00000513248 KRTAP9-6A0A140TA67 174 aa7.07□□□□□ -1.28
NUP54-212ENST00000513248 SSFA2P28290 1259 aa7.07□□□□□ -1.28
NUP54-212ENST00000513248 ADGRE1Q14246 886 aa7.07□□□□□ -1.28
NUP54-212ENST00000513248 PRSS36Q5K4E3 855 aa7.07□□□□□ -1.28
NUP54-212ENST00000513248 C8orf86Q6ZUL3 223 aa7.07□□□□□ -1.28
NUP54-212ENST00000513248 CEP63Q96MT8 703 aa7.07□□□□□ -1.28
NUP54-212ENST00000513248 TRAIPQ9BWF2 469 aa7.07□□□□□ -1.28
NUP54-212ENST00000513248 ZFP64Q9NPA5 681 aa7.07□□□□□ -1.28
NUP54-212ENST00000513248 FOXO3O43524 673 aa7.06□□□□□ -1.28
NUP54-212ENST00000513248 NRG1Q02297 640 aaPredicted RBP7.06□□□□□ -1.28
NUP54-212ENST00000513248 GRIK4Q16099 956 aa7.06□□□□□ -1.28
NUP54-212ENST00000513248 HIF1AQ16665 826 aa7.06□□□□□ -1.28
NUP54-212ENST00000513248 ALDH16A1Q8IZ83 802 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms