RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 FKBP8Q14318 412 aa9.09□□□□□ -0.95
NUP54-204ENST00000506098 ITPRIPQ8IWB1 547 aa9.09□□□□□ -0.95
NUP54-204ENST00000506098 EXOC6Q8TAG9 804 aa9.09□□□□□ -0.95
NUP54-204ENST00000506098 UBE2Q2Q8WVN8 375 aa9.09□□□□□ -0.95
NUP54-204ENST00000506098 USP44Q9H0E7 712 aa9.09□□□□□ -0.95
NUP54-204ENST00000506098 BCL2L12Q9HB09 334 aa9.09□□□□□ -0.95
NUP54-204ENST00000506098 ANO8Q9HCE9 1232 aaPredicted RBP9.09□□□□□ -0.95
NUP54-204ENST00000506098 ZBTB40Q9NUA8 1239 aa9.09□□□□□ -0.95
NUP54-204ENST00000506098 ZNF652Q9Y2D9 606 aa9.09□□□□□ -0.95
NUP54-204ENST00000506098 DLEC1Q9Y238 1755 aa9.09□□□□□ -0.95
NUP54-204ENST00000506098 PNPLA7Q6ZV29 1317 aa9.08□□□□□ -0.96
NUP54-204ENST00000506098 GCKRQ14397 625 aa9.08□□□□□ -0.96
NUP54-204ENST00000506098 CWF19L2Q2TBE0 894 aaKnown RBP9.08□□□□□ -0.96
NUP54-204ENST00000506098 USPL1Q5W0Q7 1092 aa9.08□□□□□ -0.96
NUP54-204ENST00000506098 SMIM5Q71RC9 77 aa9.08□□□□□ -0.96
NUP54-204ENST00000506098 COL23A1Q86Y22 540 aaPredicted RBP9.08□□□□□ -0.96
NUP54-204ENST00000506098 STK32BQ9NY57 414 aa9.08□□□□□ -0.96
NUP54-204ENST00000506098 TFCP2L1Q9NZI6 479 aa9.08□□□□□ -0.96
NUP54-204ENST00000506098 BRCA1P38398 1863 aaKnown RBP9.07□□□□□ -0.96
NUP54-204ENST00000506098 H7C1W4 665 aa9.07□□□□□ -0.96
NUP54-204ENST00000506098 GRM8O00222 908 aa9.07□□□□□ -0.96
NUP54-204ENST00000506098 PHF14O94880 888 aa9.07□□□□□ -0.96
NUP54-204ENST00000506098 GNAI3P08754 354 aa9.07□□□□□ -0.96
NUP54-204ENST00000506098 GYS1P13807 737 aa9.07□□□□□ -0.96
NUP54-204ENST00000506098 CASP7P55210 303 aa9.07□□□□□ -0.96
NUP54-204ENST00000506098 PARP10Q53GL7 1025 aa9.07□□□□□ -0.96
NUP54-204ENST00000506098 NLRP10Q86W26 655 aa9.07□□□□□ -0.96
NUP54-204ENST00000506098 MEIS3Q99687 375 aa9.07□□□□□ -0.96
NUP54-204ENST00000506098 CWC25Q9NXE8 425 aaPredicted RBP9.07□□□□□ -0.96
NUP54-204ENST00000506098 SRP68Q9UHB9 627 aaKnown RBP9.07□□□□□ -0.96
NUP54-204ENST00000506098 UBN2Q6ZU65 1347 aa9.06□□□□□ -0.96
NUP54-204ENST00000506098 ATP5J2-PTCD1G3V325 749 aa9.06□□□□□ -0.96
NUP54-204ENST00000506098 PCCAP05165 728 aaPredicted RBP9.06□□□□□ -0.96
NUP54-204ENST00000506098 TM4SF1P30408 202 aa9.06□□□□□ -0.96
NUP54-204ENST00000506098 HDAC5Q9UQL6 1122 aa9.06□□□□□ -0.96
NUP54-204ENST00000506098 TNRC6CQ9HCJ0 1690 aaKnown RBP9.06□□□□□ -0.96
NUP54-204ENST00000506098 CDHR2Q9BYE9 1310 aa9.05□□□□□ -0.96
NUP54-204ENST00000506098 AK9Q5TCS8 1911 aa9.05□□□□□ -0.96
NUP54-204ENST00000506098 NBPF7P0C2Y1 421 aaPredicted RBP9.05□□□□□ -0.96
NUP54-204ENST00000506098 UBTFL1P0CB47 393 aaPredicted RBP9.05□□□□□ -0.96
NUP54-204ENST00000506098 HOXD11P31277 338 aaPredicted RBP9.05□□□□□ -0.96
NUP54-204ENST00000506098 TBC1D9BQ66K14 1250 aa9.05□□□□□ -0.96
NUP54-204ENST00000506098 PPP1R42Q7Z4L9 355 aa9.05□□□□□ -0.96
NUP54-204ENST00000506098 ZBTB38Q8NAP3 1195 aaPredicted RBP9.05□□□□□ -0.96
NUP54-204ENST00000506098 ANP32EQ9BTT0 268 aa9.05□□□□□ -0.96
NUP54-204ENST00000506098 C9orf78Q9NZ63 289 aaPredicted RBP9.05□□□□□ -0.96
NUP54-204ENST00000506098 NIP7Q9Y221 180 aaKnown RBP eCLIP9.05□□□□□ -0.96
NUP54-204ENST00000506098 KIAA1551Q9HCM1 1747 aa9.05□□□□□ -0.96
NUP54-204ENST00000506098 RIC1Q4ADV7 1423 aa9.05□□□□□ -0.96
NUP54-204ENST00000506098 CARMIL3Q8ND23 1372 aa9.04□□□□□ -0.96
NUP54-204ENST00000506098 MYH13Q9UKX3 1938 aa9.04□□□□□ -0.96
NUP54-204ENST00000506098 NTSR2O95665 410 aa9.04□□□□□ -0.96
NUP54-204ENST00000506098 GNAI2P04899 355 aa9.04□□□□□ -0.96
NUP54-204ENST00000506098 GPTP24298 496 aa9.04□□□□□ -0.96
NUP54-204ENST00000506098 SUSD4Q5VX71 490 aa9.04□□□□□ -0.96
NUP54-204ENST00000506098 NLGN1Q8N2Q7 840 aa9.04□□□□□ -0.96
NUP54-204ENST00000506098 SLC16A10Q8TF71 515 aa9.04□□□□□ -0.96
NUP54-204ENST00000506098 KAZALD1Q96I82 304 aa9.04□□□□□ -0.96
NUP54-204ENST00000506098 SETDB2Q96T68 719 aa9.04□□□□□ -0.96
NUP54-204ENST00000506098 PLA2G12BQ9BX93 195 aa9.04□□□□□ -0.96
NUP54-204ENST00000506098 PPP4R2Q9NY27 417 aa9.04□□□□□ -0.96
NUP54-204ENST00000506098 GTF3C3Q9Y5Q9 886 aa9.04□□□□□ -0.96
NUP54-204ENST00000506098 COL11A2P13942 1736 aaPredicted RBP9.04□□□□□ -0.96
NUP54-204ENST00000506098 MTX1Q13505 466 aa9.03□□□□□ -0.96
NUP54-204ENST00000506098 NFIXQ14938 502 aa9.03□□□□□ -0.96
NUP54-204ENST00000506098 UBE3BQ7Z3V4 1068 aa9.03□□□□□ -0.96
NUP54-204ENST00000506098 RPAP2Q8IXW5 612 aaPredicted RBP9.03□□□□□ -0.96
NUP54-204ENST00000506098 UTP14AQ9BVJ6 771 aaKnown RBP9.03□□□□□ -0.96
NUP54-204ENST00000506098 NYXQ9GZU5 481 aa9.03□□□□□ -0.96
NUP54-204ENST00000506098 PCDHB15Q9Y5E8 787 aa9.03□□□□□ -0.96
NUP54-204ENST00000506098 CCDC88AQ3V6T2 1871 aa9.02□□□□□ -0.96
NUP54-204ENST00000506098 CHD4Q14839 1912 aa9.02□□□□□ -0.97
NUP54-204ENST00000506098 FOXO4P98177 505 aa9.02□□□□□ -0.97
NUP54-204ENST00000506098 ATP8B2P98198 1209 aa9.02□□□□□ -0.97
NUP54-204ENST00000506098 RABL6Q3YEC7 729 aaPredicted RBP9.02□□□□□ -0.97
NUP54-204ENST00000506098 SLC10A5Q5PT55 438 aa9.02□□□□□ -0.97
NUP54-204ENST00000506098 ANKRD44Q8N8A2 993 aa9.02□□□□□ -0.97
NUP54-204ENST00000506098 FAM89AQ96GI7 184 aa9.02□□□□□ -0.97
NUP54-204ENST00000506098 SUCLG2Q96I99 432 aa9.02□□□□□ -0.97
NUP54-204ENST00000506098 TRMT112Q9UI30 125 aaKnown RBP9.02□□□□□ -0.97
NUP54-204ENST00000506098 LRRFIP2Q9Y608 721 aaKnown RBP9.02□□□□□ -0.97
NUP54-204ENST00000506098 SH3TC1Q8TE82 1336 aa9.02□□□□□ -0.97
NUP54-204ENST00000506098 ARFGEF1Q9Y6D6 1849 aa9.01□□□□□ -0.97
NUP54-204ENST00000506098 LRRC37AA6NMS7 1700 aa9.01□□□□□ -0.97
NUP54-204ENST00000506098 POLRMTO00411 1230 aaKnown RBP9.01□□□□□ -0.97
NUP54-204ENST00000506098 PDE8AO60658 829 aa9.01□□□□□ -0.97
NUP54-204ENST00000506098 CSF1RP07333 972 aa9.01□□□□□ -0.97
NUP54-204ENST00000506098 HSP90B1P14625 803 aaKnown RBP9.01□□□□□ -0.97
NUP54-204ENST00000506098 HDAC1Q13547 482 aaPredicted RBP9.01□□□□□ -0.97
NUP54-204ENST00000506098 CEP85Q6P2H3 762 aa9.01□□□□□ -0.97
NUP54-204ENST00000506098 TPTE2Q6XPS3 522 aa9.01□□□□□ -0.97
NUP54-204ENST00000506098 SIRT2Q8IXJ6 389 aa9.01□□□□□ -0.97
NUP54-204ENST00000506098 ARAP2Q8WZ64 1704 aa9.01□□□□□ -0.97
NUP54-204ENST00000506098 BICC1Q9H694 974 aaKnown RBP9.01□□□□□ -0.97
NUP54-204ENST00000506098 C1orf115Q9H7X2 142 aa9.01□□□□□ -0.97
NUP54-204ENST00000506098 SLX4Q8IY92 1834 aa9.01□□□□□ -0.97
NUP54-204ENST00000506098 IRS4O14654 1257 aaPredicted RBP9□□□□□ -0.97
NUP54-204ENST00000506098 SERPINB2P05120 415 aa9□□□□□ -0.97
NUP54-204ENST00000506098 DDR1Q08345 913 aa9□□□□□ -0.97
NUP54-204ENST00000506098 POLA2Q14181 598 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms